Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  330  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106267084--106267166
34
2.4
34
80
8
96
34
4
7
53
1.50
106274259--106274288
14
2.1
14
93
0
51
16
6
6
70
1.31
106274112--106274597
89
5.5
86
86
7
656
27
16
19
36
1.93
106274350--106274384
14
2.5
14
95
0
61
17
17
5
60
1.55
106274112--106274597
180
2.7
174
86
9
680
27
16
19
36
1.93
106274557--106275032
54
8.8
54
95
1
835
29
14
17
38
1.89
106274557--106275028
164
2.9
162
94
1
827
29
14
17
38
1.89
106275001--106275098
50
2.0
50
83
4
126
29
18
26
25
1.98
106276978--106277085
24
4.4
24
73
23
73
30
8
5
55
1.52
106277069--106277151
34
2.4
34
80
8
96
34
4
7
53
1.50
106291495--106291534
19
2.1
19
90
0
62
17
2
7
72
1.19
106299957--106300000
22
2.0
21
86
4
61
50
2
0
47
1.13
106299950--106299998
11
4.5
11
75
10
55
51
2
0
46
1.12
106303743--106303783
21
2.0
21
90
0
64
19
29
21
29
1.98
106308280--106308608
167
2.0
162
83
8
418
34
11
13
41
1.80
106309470--106309506
12
3.0
12
88
4
56
67
2
0
29
1.04
106311937--106311996
20
3.0
20
73
19
54
55
3
0
41
1.16
106315702--106315743
19
2.3
19
87
4
59
45
2
0
52
1.13
106322561--106322630
21
3.3
22
79
13
76
45
17
21
15
1.85
106322590--106322669
21
3.8
21
77
0
79
42
17
21
18
1.89
106324436--106324786
174
2.0
174
84
2
463
37
19
15
27
1.93
106324812--106324879
29
2.3
29
85
12
86
27
13
7
51
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106325676--106325757
41
2.0
41
100
0
164
19
9
19
51
1.74
106327264--106327402
67
2.1
67
95
0
251
54
12
17
15
1.71
106328135--106328192
30
1.9
30
85
0
80
17
31
34
17
1.93
106330024--106330084
6
10.3
6
78
3
70
75
4
1
18
1.06
106333407--106333437
16
1.9
16
93
0
53
67
0
0
32
0.91
106335065--106335258
46
4.3
46
66
12
150
30
23
19
26
1.98
106334987--106335328
134
2.5
134
90
1
533
28
23
20
26
1.99
106335230--106335389
45
3.4
45
66
17
126
28
24
18
28
1.98
106335228--106335423
97
2.0
95
96
1
356
28
22
18
29
1.98
106335442--106336210
132
5.8
132
97
0
1421
29
26
16
27
1.96
106337226--106337259
17
1.9
18
94
5
61
2
14
0
82
0.79
106337224--106337272
6
7.8
6
84
13
64
4
16
0
79
0.88
106337224--106337272
11
3.9
12
82
17
64
4
16
0
79
0.88
106341469--106341499
16
1.9
16
93
0
53
67
0
0
32
0.91
106344156--106344201
23
2.0
23
87
8
67
69
4
0
26
1.07
106345845--106345991
59
2.6
54
69
17
154
34
16
16
32
1.91
106347576--106347621
9
5.0
9
82
15
58
30
0
2
67
1.03
106349284--106349467
72
2.6
72
97
0
350
41
23
6
28
1.79
106349468--106349514
3
15.7
3
100
0
94
68
0
0
31
0.90
106353733--106353916
72
2.6
72
97
0
350
41
23
6
28
1.79
106353917--106353945
3
9.7
3
100
0
58
68
0
0
31
0.89
106359037--106359076
16
2.3
19
83
12
50
27
2
2
67
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106361339--106361441
54
1.9
54
87
0
152
30
22
19
28
1.98
106373223--106373257
4
9.2
4
87
12
56
45
0
0
54
0.99
106373220--106373254
10
3.3
10
92
8
52
42
0
0
57
0.99
106386930--106387119
72
2.6
72
94
0
326
22
12
17
47
1.81
106387035--106387060
11
2.4
11
100
0
52
15
7
26
50
1.71
106387345--106387380
19
1.9
19
94
5
65
27
19
13
38
1.90
106388421--106388456
18
2.0
18
94
0
63
27
19
11
41
1.85
106389633--106389785
32
4.8
32
86
0
225
32
12
9
46
1.73
106389633--106389785
64
2.4
64
92
0
252
32
12
9
46
1.73
106393594--106393738
30
4.8
30
84
1
168
26
46
4
22
1.70
106394226--106394286
24
2.6
23
78
14
61
34
3
3
59
1.30
106394303--106394443
25
5.5
26
73
11
78
34
6
4
55
1.45
106394320--106394410
26
3.3
26
72
13
76
31
5
5
57
1.45
106394600--106394647
16
3.1
15
90
6
69
31
2
2
64
1.16
106394600--106394651
8
6.5
8
82
8
61
30
1
1
65
1.14
106404542--106405035
73
6.5
73
76
12
458
29
17
21
32
1.96
106404817--106404844
14
2.0
14
100
0
56
14
21
7
57
1.61
106404851--106405035
74
2.5
73
92
0
307
29
16
22
30
1.96
106404614--106405268
238
2.8
238
93
0
1098
29
17
21
32
1.96
106404998--106405163
90
1.8
88
82
7
208
29
15
18
36
1.92
106405087--106405268
75
2.5
75
88
1
260
32
14
21
30
1.94
106405346--106405453
54
2.0
55
87
1
155
27
13
19
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106405143--106405454
126
2.4
127
83
6
389
27
15
20
36
1.93
106405475--106405501
14
1.9
14
100
0
54
18
14
7
59
1.58
106405509--106405731
73
3.0
72
84
3
295
28
16
21
33
1.95
106405711--106405761
14
3.6
14
77
12
50
19
11
3
64
1.41
106405725--106405758
16
2.1
16
88
0
50
17
8
2
70
1.25
106405637--106405846
105
2.0
105
85
1
287
22
16
16
44
1.86
106406448--106406608
30
5.4
30
91
2
252
27
46
3
22
1.68
106406448--106406608
61
2.7
60
89
2
252
27
46
3
22
1.68
106406448--106406640
30
6.4
29
86
6
235
26
45
3
23
1.69
106407224--106407266
16
2.7
16
80
20
54
37
2
0
60
1.10
106407131--106407346
25
8.7
25
68
18
94
34
6
4
55
1.44
106407320--106407375
19
2.8
20
75
8
60
32
7
5
55
1.50
106407489--106407537
16
3.0
17
79
8
57
30
2
2
65
1.15
106417328--106417360
15
2.2
15
100
0
66
21
6
0
72
1.05
106418047--106418097
23
2.2
23
92
0
84
50
1
3
43
1.31
106422291--106422326
15
2.4
15
90
0
54
33
8
30
27
1.86
106430419--106430478
20
3.0
20
85
4
68
50
0
3
46
1.18
106438668--106438931
22
12.9
21
63
17
56
27
8
1
62
1.33
106438864--106438946
21
4.2
20
75
10
62
26
10
1
61
1.36
106438667--106438931
3
87.7
3
71
10
146
27
8
1
62
1.34
106440444--106440490
22
2.2
21
84
3
58
36
21
8
34
1.84
106440461--106440539
19
4.2
19
88
9
117
35
15
10
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106440461--106440536
36
2.1
38
95
5
138
35
14
10
39
1.81
106440464--106440549
36
2.4
34
83
12
118
36
13
10
39
1.80
106440902--106440959
26
2.3
26
80
19
77
32
3
6
56
1.42
106443965--106444013
20
2.5
20
75
0
53
24
8
2
65
1.31
106446890--106447049
89
1.8
86
85
6
223
40
15
12
31
1.85
106447109--106447169
28
2.2
28
84
0
77
63
3
3
29
1.26
106447370--106447478
38
3.0
36
84
11
143
35
1
0
62
1.06
106447494--106447805
89
3.5
89
93
2
504
31
9
23
34
1.88
106448360--106448397
18
2.1
18
95
0
67
23
31
13
31
1.93
106451920--106451971
24
2.2
24
89
0
77
55
9
1
32
1.43
106460118--106460204
42
2.1
42
89
8
133
42
16
20
20
1.89
106465843--106465867
13
1.9
13
100
0
50
32
4
16
48
1.64
106467434--106467515
22
3.5
22
74
16
76
41
2
1
54
1.21
106467434--106467526
49
1.9
48
88
2
141
43
2
1
53
1.19
106467434--106467535
48
2.1
48
85
3
134
43
3
0
51
1.26
106471028--106471065
20
1.9
20
100
0
76
50
0
5
44
1.24
106475336--106475585
44
5.6
44
74
4
178
28
22
18
30
1.97
106477528--106477565
13
2.8
13
92
4
58
52
2
0
44
1.14
106477514--106477589
29
2.7
28
75
22
70
56
2
0
40
1.13
106477531--106477589
15
4.1
15
73
20
54
52
3
0
44
1.17
106477523--106477580
18
3.3
19
72
20
54
53
3
0
43
1.17
106478581--106478649
30
2.3
31
87
2
104
34
37
4
23
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106480077--106480110
12
2.8
12
81
0
50
29
0
0
70
0.87
106485409--106485450
17
2.4
19
80
11
54
4
19
14
61
1.49
106486113--106486163
10
5.0
10
85
4
66
25
7
0
66
1.18
106487300--106487428
44
2.9
44
75
4
118
33
22
16
27
1.95
106487385--106487749
94
3.9
92
76
4
295
31
21
15
30
1.95
106487738--106487856
44
2.5
48
71
18
113
28
15
20
35
1.94
106487763--106487895
44
3.0
44
82
4
144
28
20
17
33
1.95
106489628--106489685
28
2.1
28
93
0
98
31
17
3
48
1.64
106490335--106490361
8
3.4
8
100
0
54
37
0
14
48
1.45
106503192--106503235
22
2.0
22
100
0
88
36
4
27
31
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356