genome.fa.s11.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  157  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50682192--50682696	47	10.7	47	97	0	947	29	29	8	31	1.87
50686214--50686554	40	8.5	40	83	3	375	25	27	22	24	2.00
50686860--50686938	29	2.7	29	84	5	97	27	31	15	25	1.95
50686920--50687022	43	2.4	43	98	0	197	26	35	14	23	1.93
50689455--50689529	29	2.6	28	85	10	98	26	13	29	30	1.94
50689482--50689809	174	1.9	174	95	0	593	30	14	24	31	1.94
50697625--50697702	29	2.7	28	84	11	104	25	15	30	28	1.96
50697655--50697982	174	1.9	174	96	0	611	30	14	24	30	1.95
50700429--50700507	37	2.1	37	88	0	113	26	31	17	24	1.97
50700625--50701037	47	8.7	47	96	1	736	29	29	9	31	1.88
50703469--50703528	30	2.0	30	100	0	120	33	23	13	30	1.93
50710150--50710304	43	3.6	43	75	7	154	25	20	23	30	1.98
50712391--50712436	19	2.4	18	86	13	58	30	21	0	47	1.51
50712593--50712679	21	4.0	23	80	10	92	37	25	21	14	1.92
50713051--50713108	15	3.8	15	88	2	89	51	12	0	36	1.39
50713054--50713112	30	2.0	28	93	6	100	55	11	0	32	1.36
50722364--50722454	28	3.2	28	90	4	139	31	23	24	20	1.98
50722560--50722624	28	2.3	28	91	0	103	32	7	27	32	1.85
50732187--50732212	9	2.9	9	100	0	52	11	19	23	46	1.82
50736766--50736825	21	3.0	21	68	26	58	36	13	13	36	1.84
50739200--50739251	21	2.5	21	80	0	59	42	3	34	19	1.69
50739900--50739975	38	2.0	38	100	0	152	31	13	23	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50741163--50741343	40	4.6	40	82	4	197	24	24	26	24	2.00
50748751--50748824	29	2.6	29	86	4	96	25	31	16	27	1.96
50756839--50756912	29	2.6	29	86	4	96	25	31	16	27	1.96
50760821--50760993	39	4.6	38	78	15	139	25	21	24	28	1.99
50768579--50768778	40	5.1	40	89	7	286	22	24	29	25	1.99
50768579--50768791	79	2.8	77	87	6	281	23	23	28	24	1.99
50786595--50786668	29	2.6	29	84	4	87	24	32	16	27	1.96
50791308--50791383	38	2.0	38	100	0	152	31	13	23	31	1.93
50792957--50793035	37	2.1	37	83	4	97	27	29	17	25	1.98
50793154--50793817	47	14.1	47	93	1	1069	29	29	9	31	1.88
50797358--50797525	40	4.2	40	81	4	187	24	23	26	25	2.00
50801383--50801447	33	2.0	33	93	0	112	18	24	15	41	1.89
50804768--50804886	43	2.8	42	84	5	141	23	17	26	32	1.97
50808304--50808401	40	2.5	40	88	5	137	24	23	29	22	1.99
50815415--50815458	21	2.0	22	86	4	63	34	50	2	13	1.55
50815641--50815683	20	2.2	20	100	0	86	34	23	11	30	1.90
50819259--50819329	22	3.3	22	74	4	81	22	35	25	16	1.95
50823069--50823197	54	2.4	54	86	2	179	40	18	10	30	1.85
50823069--50823197	27	4.8	27	83	1	152	40	18	10	30	1.85
50823107--50823209	54	1.9	54	87	0	152	41	16	12	29	1.85
50823627--50823687	27	2.2	28	85	8	90	21	13	18	47	1.82
50823637--50823700	27	2.4	27	83	0	83	17	15	23	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50830676--50830727	15	3.2	15	73	19	50	44	0	1	53	1.11
50830760--50830796	16	2.3	16	86	13	58	40	0	0	59	0.97
50830808--50830863	22	2.6	22	83	5	62	51	0	0	48	1.00
50833842--50834118	48	5.8	48	82	0	284	31	24	17	26	1.97
50833842--50834118	144	1.9	144	84	0	374	31	24	17	26	1.97
50838328--50838506	27	6.6	27	83	3	207	26	15	27	30	1.96
50838330--50838485	82	1.9	81	88	3	233	26	15	28	29	1.96
50838326--50838506	82	2.2	81	82	2	229	27	14	27	30	1.95
50843726--50843809	40	2.1	40	100	0	168	35	17	16	29	1.93
50843775--50844098	48	7.0	48	77	8	303	29	22	19	28	1.98
50849786--50849823	20	1.9	20	88	0	58	52	0	0	47	1.00
50852824--50852851	2	14.0	2	100	0	56	0	0	50	50	1.00
50858379--50858523	40	3.6	40	85	4	193	24	26	24	25	2.00
50859712--50859787	38	2.0	38	94	0	134	31	21	13	34	1.91
50866302--50866412	40	2.8	40	83	1	98	25	28	23	22	1.99
50866325--50866468	40	3.6	40	85	5	184	22	25	25	26	2.00
50867653--50867728	38	2.0	38	100	0	152	31	23	13	31	1.93
50875618--50875758	27	5.2	27	78	11	155	18	24	22	34	1.96
50875615--50875758	54	2.7	54	89	2	209	18	24	22	34	1.96
50875618--50875776	27	5.9	26	80	10	133	19	24	21	34	1.96
50879076--50879104	11	2.5	12	94	5	51	6	13	13	65	1.45
50888962--50888990	14	2.1	14	100	0	58	37	13	13	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50891115--50891170	3	20.3	3	74	17	50	60	0	1	37	1.07
50891103--50891150	21	2.3	21	82	10	64	58	0	2	39	1.10
50892214--50892273	30	2.0	30	93	0	102	25	8	11	55	1.63
50892394--50892426	11	2.9	12	86	13	52	66	0	0	33	0.92
50892819--50892844	6	4.3	6	100	0	52	19	19	15	46	1.85
50895349--50895524	48	3.7	47	82	3	210	26	26	17	29	1.98
50898267--50898328	30	2.1	30	87	6	90	51	3	0	45	1.17
50904920--50905076	27	5.8	27	78	11	162	35	21	23	19	1.96
50904920--50905076	54	2.9	54	87	4	221	35	21	23	19	1.96
50906699--50906806	26	4.2	26	91	2	173	37	23	7	32	1.82
50907991--50908020	14	2.1	15	93	6	53	46	0	0	53	1.00
50909859--50909903	22	2.0	22	83	12	56	26	0	6	66	1.16
50907130--50910599	694	5.0	695	87	2	4870	29	15	12	42	1.84
50913996--50914032	14	2.4	16	82	13	51	27	0	2	70	1.01
50914956--50914996	7	5.2	8	77	16	50	60	0	0	39	0.96
50916526--50916572	17	2.5	19	80	19	55	68	4	2	25	1.19
50917146--50917201	27	2.0	28	82	6	69	28	1	0	69	0.98
50917228--50917271	17	2.5	17	85	3	52	54	0	2	43	1.12
50920391--50920432	22	1.9	22	90	0	66	35	14	26	23	1.93
50920453--50920515	22	2.9	22	87	0	81	41	11	26	20	1.86
50920463--50920550	22	4.0	22	85	2	97	44	14	25	15	1.85
50928669--50928714	21	2.2	21	96	0	83	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50929162--50929215	26	2.1	26	85	0	72	46	12	14	25	1.81
50929300--50929334	15	2.3	15	90	9	54	85	2	11	0	0.69
50929493--50929531	19	2.1	19	85	9	53	23	0	7	69	1.14
50929672--50929710	19	2.1	19	85	4	53	51	0	0	48	1.00
50935990--50936039	25	2.0	25	88	0	73	46	12	0	42	1.41
50937716--50937746	12	2.6	12	94	0	53	25	25	9	38	1.86
50945987--50946162	71	2.5	71	83	1	212	28	15	23	31	1.95
50945987--50946505	191	2.7	187	82	7	549	26	16	23	33	1.96
50946246--50946473	127	1.8	126	85	2	323	26	15	24	34	1.95
50949123--50949172	25	2.0	25	88	0	73	46	12	0	42	1.41
50950510--50950549	17	2.4	17	100	0	80	27	7	17	47	1.74
50950615--50950650	18	2.0	18	100	0	72	38	5	5	50	1.49
50950815--50950848	10	3.3	10	88	8	50	17	0	0	82	0.67
50950815--50950846	15	2.2	14	94	5	55	18	0	0	81	0.70
50950819--50950862	21	2.2	20	84	12	54	15	0	4	79	0.89
50958516--50958559	21	2.1	21	91	0	70	38	9	20	31	1.84
50965739--50965908	46	3.7	46	77	7	182	30	29	18	21	1.97
50965747--50965918	93	1.8	93	89	0	272	29	29	19	22	1.98
50982991--50983235	40	6.2	40	86	2	284	25	27	23	23	2.00
50983014--50983236	79	2.8	79	84	4	281	25	27	23	23	2.00
50986012--50986132	42	2.8	43	82	2	145	32	23	15	28	1.95
50989584--50989737	42	3.6	42	83	3	184	30	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50997180--50997467	23	12.5	23	79	5	269	32	23	20	23	1.98
50997190--50997437	46	5.4	46	88	1	320	31	25	20	22	1.98
50999786--50999813	13	2.2	13	100	0	56	46	14	0	39	1.44
51003601--51003926	23	14.2	23	81	6	367	31	25	19	23	1.98
51003601--51003915	69	4.6	69	90	2	481	31	25	19	23	1.98
51005818--51005883	25	2.7	25	92	2	107	22	24	28	24	1.99
51006106--51006279	27	6.4	27	85	0	231	24	20	20	35	1.96
51006106--51006279	81	2.1	81	92	0	285	24	20	20	35	1.96
51006237--51006405	27	6.3	27	82	2	162	30	10	21	38	1.86
51006239--51006405	54	3.1	54	85	4	196	29	9	21	38	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356