Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  13  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4515429--4515498
18
3.7
17
75
17
50
75
7
14
2
1.12
4515432--4515481
15
3.1
16
76
15
50
72
10
14
4
1.26
4515447--4515499
23
2.5
21
82
11
63
77
5
15
1
1.04
4515445--4515505
19
3.1
19
76
19
61
77
4
16
1
1.03
4515447--4515513
23
3.0
23
75
18
61
77
4
16
1
1.00
4515429--4515513
21
4.1
20
69
23
59
76
5
15
2
1.08
4515484--4515516
12
3.0
11
91
8
50
81
0
18
0
0.68
4516555--4516689
39
3.4
39
74
11
116
28
27
20
23
1.99
4518253--4518287
5
7.0
5
100
0
70
60
0
0
40
0.97
4522254--4522662
47
8.6
47
91
3
647
28
29
8
33
1.86
4526301--4526628
40
8.2
40
93
0
539
25
28
22
22
1.99
4528120--4528722
47
12.6
47
89
4
918
29
29
8
33
1.86
4528120--4528722
96
6.3
96
94
1
962
29
29
8
33
1.86
4534317--4534451
39
3.4
39
74
11
116
28
27
20
23
1.99
4536013--4536047
5
7.0
5
100
0
70
60
0
0
40
0.97
4536651--4536782
40
3.4
39
73
11
110
28
17
21
32
1.96
4537511--4537557
24
2.0
24
83
8
60
21
2
29
46
1.63
4538149--4538192
8
5.5
8
88
0
70
59
0
0
40
0.98
4538198--4538243
17
2.8
16
80
9
56
78
2
13
6
1.04
4540539--4540729
47
3.9
47
82
5
186
24
16
28
30
1.97
4540577--4540747
93
1.8
93
82
6
211
24
15
28
31
1.96
4545378--4545425
14
3.6
14
78
16
66
75
4
0
20
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4545393--4545438
11
3.9
11
78
15
56
78
2
0
19
0.86
4545379--4545436
25
2.3
25
100
0
116
77
3
0
18
0.91
4545388--4545433
9
5.3
9
79
10
60
78
2
0
19
0.86
4548735--4548804
31
2.3
32
80
7
74
54
7
2
35
1.43
4548794--4548857
22
2.8
22
80
4
65
56
0
3
40
1.15
4553385--4553540
84
1.9
84
87
2
233
27
16
12
43
1.84
4573250--4573296
21
2.3
20
76
16
51
46
2
4
46
1.34
4573578--4573609
11
2.9
11
100
0
64
65
0
0
34
0.93
4573923--4573956
16
2.1
17
88
5
52
29
0
0
70
0.87
4581712--4581800
18
4.9
18
81
0
106
37
15
17
29
1.91
4594583--4594625
16
2.7
16
82
10
52
41
0
4
53
1.21
4612069--4612105
3
12.0
3
94
5
65
64
2
0
32
1.07
4612284--4612331
20
2.4
22
80
20
68
81
0
0
18
0.70
4615880--4615948
33
2.1
33
100
0
138
17
14
14
53
1.73
4632709--4632744
16
2.2
16
90
0
54
41
0
11
47
1.39
4635211--4635269
30
2.0
30
93
0
100
47
20
5
27
1.71
4635738--4635817
5
16.0
5
100
0
160
40
0
0
60
0.97
4635852--4635912
30
2.0
30
81
9
70
59
6
34
0
1.24
4639323--4639709
131
2.9
131
82
3
456
33
17
19
29
1.95
4646033--4646117
39
2.1
40
86
4
118
34
1
10
54
1.43
4647605--4647688
41
2.1
40
82
10
100
46
1
3
48
1.27
4647886--4647919
15
2.1
15
89
10
50
64
0
35
0
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4647885--4647923
17
2.3
18
82
13
55
66
0
33
0
0.92
4648611--4648659
26
1.9
26
95
4
91
51
4
20
24
1.65
4648803--4648910
39
2.7
39
88
5
146
39
9
16
34
1.81
4648803--4648910
40
2.7
39
87
5
146
39
9
16
34
1.81
4658321--4658418
41
2.3
43
82
5
110
34
22
16
26
1.95
4666564--4666601
11
3.2
12
92
7
60
0
52
0
47
1.00
4667103--4667148
23
2.0
23
83
8
58
30
2
10
56
1.46
4669291--4669406
33
3.5
33
79
7
121
34
33
8
23
1.85
4669291--4669402
16
6.9
16
68
11
75
34
33
8
22
1.85
4669352--4669416
33
2.0
33
93
0
112
35
33
9
21
1.85
4671520--4671606
43
2.0
44
84
2
113
28
6
18
45
1.75
4671828--4671866
20
2.0
20
94
0
69
48
0
2
48
1.15
4673928--4673960
13
2.4
14
85
15
50
0
12
15
72
1.12
4673988--4674018
16
1.9
16
93
0
53
54
3
0
41
1.16
4674275--4674305
15
2.1
14
94
5
53
54
6
3
35
1.42
4674292--4674360
21
3.4
20
71
16
70
55
7
1
36
1.37
4689259--4689297
20
1.9
21
89
5
62
43
15
7
33
1.75
4689582--4689624
19
2.3
19
88
4
61
44
0
4
51
1.22
4690352--4690389
20
1.9
20
84
10
51
42
0
0
57
0.98
4694698--4694728
14
2.2
14
94
0
53
51
35
0
12
1.40
4706770--4706811
15
2.6
17
77
11
52
47
0
4
47
1.23
4711885--4711948
33
2.0
31
91
8
103
67
0
17
15
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4711871--4711949
6
12.8
6
88
5
97
67
0
17
15
1.24
4723093--4723138
21
2.1
21
84
4
56
43
4
8
43
1.55
4724681--4724730
17
2.7
20
78
18
70
10
0
44
46
1.37
4729318--4729367
17
2.7
20
78
18
70
10
0
44
46
1.37
4745481--4745541
23
2.7
23
76
0
68
60
6
4
27
1.42
4745593--4745633
18
2.3
19
80
20
52
65
0
2
31
1.05
4748474--4748581
44
2.4
44
87
3
144
29
23
13
33
1.93
4757652--4757693
22
1.9
22
85
9
59
30
0
0
69
0.89
4758823--4758885
29
2.1
28
85
11
81
26
3
3
66
1.22
4758972--4759013
20
2.2
20
91
4
68
57
9
0
33
1.31
4762201--4762287
45
2.0
44
84
11
115
52
10
8
28
1.63
4763405--4763437
17
2.0
17
94
5
59
51
0
0
48
1.00
4765592--4765627
2
18.0
2
100
0
72
50
0
50
0
1.00
4768862--4768904
17
2.4
18
85
11
54
51
13
0
34
1.42
4771194--4771279
27
3.2
26
69
12
66
34
39
10
15
1.81
4771235--4771313
33
2.6
29
73
24
74
37
40
3
17
1.68
4771276--4771358
30
2.8
29
72
17
71
42
36
2
19
1.64
4771660--4771691
15
2.1
15
94
0
55
34
43
12
9
1.75
4773069--4773103
16
2.2
16
90
10
54
62
0
0
37
0.95
4773578--4773642
16
4.1
15
71
19
51
64
3
3
29
1.23
4773914--4773953
18
2.2
19
86
13
57
70
0
0
30
0.88
4774786--4774954
59
2.9
59
78
8
161
23
11
10
54
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4774786--4774952
58
2.9
59
77
8
148
23
11
10
53
1.68
4775495--4775603
27
3.9
29
77
9
84
52
10
11
25
1.69
4780890--4780938
23
2.3
20
79
10
53
36
2
4
57
1.30
4790200--4790246
20
2.2
21
81
11
60
36
2
2
59
1.21
4790200--4790245
19
2.3
21
82
17
62
34
2
2
60
1.21
4791613--4791693
24
3.5
24
64
6
67
50
3
2
43
1.33
4791969--4792005
15
2.3
17
86
9
51
37
8
10
43
1.69
4804109--4804162
25
2.1
26
83
10
67
48
1
16
33
1.57
4809420--4809474
19
2.9
18
70
19
58
38
7
0
54
1.28
4810029--4810083
19
2.8
19
73
13
58
34
1
1
61
1.17
4812825--4812858
16
2.1
16
89
10
52
79
0
20
0
0.73
4821177--4821224
23
2.2
23
85
7
64
58
2
4
35
1.29
4821222--4821279
27
2.1
27
84
6
73
46
1
6
44
1.40
4823680--4823733
18
3.2
17
80
12
58
46
9
0
44
1.35
4823678--4823721
18
2.5
17
82
7
61
47
6
0
45
1.29
4828432--4828494
23
2.7
23
79
11
67
55
1
0
42
1.09
4828426--4828493
11
6.0
11
70
16
50
55
1
1
41
1.18
4836492--4836532
21
2.0
21
90
0
64
29
21
29
19
1.98
4843433--4843487
29
1.9
28
89
10
85
54
3
1
40
1.28
4847228--4847274
21
2.2
21
77
7
51
25
6
4
63
1.36
4847782--4847838
23
2.5
22
81
15
64
63
5
3
28
1.33
4847784--4847845
23
2.8
22
79
15
58
64
4
3
27
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4847901--4847945
13
3.0
16
75
18
51
42
0
0
57
0.98
4851894--4851926
5
6.6
5
100
0
66
0
18
0
81
0.68
4852440--4852465
3
8.7
3
100
0
52
65
0
0
34
0.93
4853962--4853994
13
2.4
14
85
5
50
42
3
0
54
1.15
4854864--4854930
29
2.3
30
77
12
68
53
11
0
34
1.38
4859159--4859204
14
3.2
14
78
6
56
60
0
0
39
0.97
4859171--4859226
15
3.7
15
76
13
62
55
0
0
44
0.99
4859159--4859226
28
2.4
29
87
4
95
55
0
0
44
0.99
4859167--4859226
14
4.3
14
76
18
54
53
0
0
46
1.00
4868554--4868579
7
3.7
7
100
0
52
30
26
30
11
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356