genome.fa.s11.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  148  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47591971--47592007	17	2.2	17	100	0	74	72	10	5	10	1.25
47592857--47593083	46	4.8	49	77	12	210	25	18	33	22	1.97
47596867--47596918	26	2.0	26	88	0	77	44	19	17	19	1.87
47602790--47603014	46	4.8	46	76	11	176	28	18	28	24	1.98
47605265--47605523	46	5.5	47	73	13	160	28	18	31	22	1.97
47608860--47609053	98	2.0	100	85	4	268	25	12	21	39	1.89
47610398--47610479	42	1.9	43	85	2	112	32	23	15	28	1.95
47621272--47621401	65	2.0	65	100	0	260	41	6	15	36	1.72
47623928--47624072	40	3.6	40	84	4	175	25	23	26	24	2.00
47630609--47630634	9	2.9	9	100	0	52	65	0	0	34	0.93
47630629--47630677	20	2.5	19	80	9	62	30	2	0	67	1.02
47630630--47630680	19	2.7	20	82	11	63	31	1	0	66	1.03
47630852--47630893	16	2.5	17	76	3	50	66	2	7	23	1.28
47632223--47632247	10	2.5	10	100	0	50	32	0	0	68	0.90
47634150--47634185	11	3.3	11	88	0	54	38	0	2	58	1.13
47636483--47636653	46	3.7	44	73	13	139	24	27	19	28	1.98
47653608--47653786	40	4.5	40	88	6	256	26	29	22	20	1.99
47653608--47653786	80	2.2	80	91	2	288	26	29	22	20	1.99
47660201--47660268	30	2.3	30	84	5	84	47	5	19	27	1.72
47660530--47660554	8	3.1	8	100	0	50	24	0	0	76	0.80
47662665--47662844	46	3.9	46	89	1	236	40	14	24	21	1.90
47679972--47680042	35	2.0	35	97	0	133	16	29	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47691468--47691653	41	4.6	41	87	3	243	25	26	23	24	2.00
47713751--47713799	24	2.0	25	88	4	73	20	22	22	34	1.97
47714236--47714268	16	2.0	17	88	5	50	48	0	15	36	1.45
47714224--47714268	15	2.8	17	77	12	51	46	0	15	37	1.46
47721613--47722255	40	16.1	40	96	0	1126	27	19	27	25	1.99
47724304--47724607	40	7.7	40	90	4	431	25	21	27	26	1.99
47744452--47744526	40	1.9	39	82	12	93	49	13	0	37	1.42
47744497--47744552	24	2.3	25	79	14	64	48	19	0	32	1.49
47745224--47745255	16	2.0	16	93	0	55	6	3	3	87	0.73
47746849--47746887	14	2.8	14	92	0	60	41	7	17	33	1.79
47748303--47748361	30	2.0	30	89	0	91	33	25	13	27	1.93
47749882--47749918	16	2.3	16	86	13	58	40	0	0	59	0.97
47752143--47752321	85	2.1	85	98	0	349	37	8	27	26	1.85
47753566--47754019	49	9.6	48	89	6	610	33	8	28	29	1.86
47753566--47754019	96	4.8	96	90	5	667	33	8	28	29	1.86
47756448--47756522	38	2.0	38	86	5	107	30	18	26	24	1.98
47756583--47757016	40	10.9	40	93	0	679	24	21	28	26	1.99
47758272--47758450	85	2.1	85	98	0	349	37	8	27	26	1.85
47759718--47760267	47	11.6	47	93	3	811	33	9	29	28	1.88
47759718--47760267	96	5.8	96	91	3	832	33	9	29	28	1.88
47765274--47765442	43	4.0	43	81	6	191	24	15	26	33	1.96
47768908--47768948	21	2.0	21	85	0	55	21	19	43	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47776223--47776265	21	2.0	21	86	0	59	25	25	34	13	1.93
47778034--47778214	39	4.6	39	82	7	208	25	28	21	24	1.99
47778036--47778212	77	2.3	78	83	5	207	25	28	21	24	1.99
47785805--47785985	38	4.6	39	77	12	158	25	27	23	24	2.00
47788292--47788468	47	3.8	46	74	12	155	24	29	18	27	1.98
47788332--47788512	94	1.9	93	83	3	229	24	29	18	27	1.98
47794537--47794579	17	2.6	17	85	3	52	60	2	9	27	1.40
47796202--47796239	17	2.2	17	95	0	67	15	10	15	57	1.64
47796949--47797108	43	3.7	43	73	11	112	22	15	28	33	1.95
47799576--47799891	48	6.7	48	93	2	489	33	7	28	30	1.85
47800059--47800161	37	2.8	37	95	0	179	24	20	31	24	1.98
47801425--47801558	40	3.4	40	97	1	252	26	21	26	25	2.00
47801425--47801578	40	3.9	40	94	4	251	26	22	25	25	2.00
47801590--47801658	28	2.5	28	95	0	120	20	21	26	31	1.98
47805178--47805538	48	7.5	48	93	0	587	36	6	26	30	1.83
47805713--47805812	37	2.7	37	95	0	173	25	19	32	24	1.98
47812954--47813057	52	2.0	52	94	0	181	22	18	15	44	1.87
47813202--47813230	6	4.8	6	100	0	58	34	0	13	51	1.42
47813292--47813333	23	1.9	21	85	9	57	42	4	2	50	1.36
47813321--47813364	22	1.9	23	86	9	63	34	9	0	56	1.31
47817352--47817571	46	4.7	48	77	11	183	23	28	19	29	1.98
47817398--47817568	94	1.8	91	81	12	213	23	27	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47819203--47819255	25	2.2	24	89	3	79	37	22	20	18	1.94
47824457--47824720	40	6.6	40	91	3	417	26	27	22	23	2.00
47824450--47824721	119	2.3	119	92	3	449	25	27	22	24	2.00
47832521--47832776	39	6.6	40	87	6	355	25	26	22	25	2.00
47832521--47832776	79	3.3	79	87	5	353	25	26	22	25	2.00
47832489--47832776	39	7.4	39	84	8	304	25	26	21	26	2.00
47848893--47848971	31	2.5	31	95	0	140	27	25	18	27	1.98
47849198--47849397	26	7.8	26	88	3	291	27	22	23	27	1.99
47849198--47849397	51	3.9	52	91	3	291	27	22	23	27	1.99
47849198--47849397	77	2.6	77	92	3	314	27	22	23	27	1.99
47849447--47849521	20	3.8	20	87	6	102	36	20	9	34	1.84
47850224--47850302	27	2.9	27	83	10	99	18	25	22	32	1.97
47850364--47850458	26	3.6	25	78	13	66	36	8	15	38	1.78
47850372--47850842	27	17.6	26	75	14	108	35	9	19	36	1.84
47850372--47850458	29	3.3	26	78	13	70	32	8	17	42	1.78
47850448--47850576	27	4.8	27	86	3	181	31	8	19	41	1.81
47850448--47850576	53	2.4	53	92	3	206	31	8	19	41	1.81
47850342--47850580	27	9.0	26	78	9	162	33	8	17	39	1.80
47850567--47850743	27	6.6	27	82	10	159	42	9	20	28	1.82
47850540--47850803	107	2.5	107	73	8	259	38	9	21	30	1.85
47850569--47850749	53	3.4	54	85	3	242	41	8	21	28	1.83
47850569--47850749	80	2.3	80	84	1	238	41	8	21	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47850755--47850844	27	3.3	27	85	3	119	32	10	17	40	1.83
47850729--47850844	54	2.1	54	81	6	128	31	10	18	39	1.85
47853061--47853277	39	5.6	40	86	9	292	26	26	23	23	2.00
47853061--47853277	114	1.9	118	85	11	315	26	26	23	23	2.00
47860658--47860699	21	2.0	21	86	9	59	35	14	16	33	1.89
47860956--47861218	40	6.6	40	90	6	385	26	27	21	23	1.99
47868958--47869214	40	6.6	40	87	5	364	26	26	22	24	2.00
47868958--47869214	79	3.3	79	86	6	353	26	26	22	24	2.00
47873603--47873634	12	2.6	12	95	5	55	46	3	0	50	1.17
47887682--47887902	48	4.6	48	81	5	241	28	20	28	23	1.99
47887682--47887899	96	2.3	97	83	7	268	28	20	27	23	1.99
47890077--47890183	28	3.8	28	92	0	160	29	25	10	34	1.89
47895150--47895304	28	5.5	28	71	3	112	30	34	18	17	1.94
47895120--47895306	57	3.2	57	90	1	284	29	35	16	18	1.93
47895120--47895272	29	5.3	29	68	7	114	30	35	16	17	1.92
47897275--47897381	28	3.8	28	89	0	151	30	25	9	34	1.87
47901418--47901598	23	7.9	23	82	7	233	24	20	25	29	1.99
47901419--47901598	69	2.6	69	85	5	265	24	20	25	30	1.99
47901409--47901629	46	4.8	46	84	2	300	23	21	24	30	1.99
47901409--47901619	23	9.2	23	79	8	207	22	21	25	30	1.99
47905542--47905571	15	2.0	15	93	0	51	26	0	16	56	1.40
47906766--47906811	23	2.0	23	100	0	92	26	17	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47912124--47912504	48	7.9	48	81	6	362	27	17	28	26	1.97
47912138--47912502	144	2.5	142	82	7	434	27	17	28	25	1.98
47918430--47918617	40	4.7	40	95	0	331	21	27	20	30	1.98
47934717--47934814	40	2.5	40	90	4	130	33	5	19	41	1.73
47934729--47934814	40	2.2	40	97	0	163	31	5	20	41	1.76
47943823--47943945	43	2.8	43	83	4	158	33	26	14	26	1.94
47948626--47948772	56	2.6	56	74	8	136	34	18	14	31	1.91
47954420--47954498	37	2.1	37	90	0	122	25	31	18	24	1.98
47954616--47955052	47	9.2	47	89	2	649	29	30	8	31	1.86
47954616--47955054	96	4.6	95	91	2	657	29	30	7	31	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356