Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  322  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104216193--104216228
17
2.1
18
89
5
56
25
5
0
69
1.10
104216285--104216320
14
2.6
14
90
0
54
25
19
5
50
1.69
104216122--104216619
88
5.6
88
82
7
516
29
16
17
36
1.92
104216740--104216794
21
2.6
21
94
0
92
32
14
29
23
1.94
104218334--104218381
24
2.0
24
88
8
71
31
8
12
47
1.71
104218443--104218477
13
2.8
13
86
4
54
28
5
2
62
1.32
104218445--104218481
19
1.9
19
94
0
65
27
5
5
62
1.39
104218826--104218907
26
3.2
26
96
0
155
30
6
26
36
1.81
104220393--104220445
26
2.0
26
85
7
72
37
22
15
24
1.92
104227694--104227734
20
2.0
20
100
0
82
34
26
14
24
1.94
104231228--104231273
22
2.1
21
84
15
58
65
4
8
21
1.38
104233975--104234038
31
2.1
31
100
0
128
23
29
12
34
1.92
104236640--104237016
131
2.9
131
80
5
395
33
17
20
28
1.96
104238543--104238570
4
7.0
4
100
0
56
25
0
25
50
1.50
104260206--104260397
86
2.2
87
90
2
300
13
29
17
40
1.87
104262458--104262531
36
2.0
37
94
2
132
37
4
32
25
1.75
104265064--104265134
36
2.0
36
97
2
135
39
11
21
28
1.87
104265702--104265755
23
2.3
23
78
15
58
33
9
18
38
1.83
104267825--104267864
21
1.9
21
89
0
62
25
12
30
32
1.92
104273746--104273861
55
2.1
55
91
0
187
20
25
28
25
1.99
104276273--104276398
62
2.0
62
98
0
243
38
3
23
34
1.73
104277038--104277342
168
1.8
164
79
5
353
28
13
22
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104279199--104279278
6
13.0
6
74
9
54
25
1
0
73
0.90
104279214--104279280
27
2.5
26
90
9
107
23
1
0
74
0.90
104281093--104281141
21
2.3
21
82
6
55
30
4
4
61
1.33
104290448--104290488
21
2.0
21
90
0
64
29
21
29
19
1.98
104295623--104295662
16
2.6
16
88
4
55
32
0
0
67
0.91
104295688--104295723
3
11.7
3
88
5
54
30
2
2
63
1.22
104295855--104295896
21
2.0
21
85
0
57
28
4
2
64
1.26
104303553--104303593
21
2.0
21
90
0
64
29
21
29
19
1.98
104312826--104312859
16
2.1
16
88
0
50
50
14
17
17
1.79
104317604--104317637
16
2.1
16
88
0
50
50
14
17
17
1.79
104321365--104322032
69
9.7
69
75
2
491
31
25
16
26
1.97
104321365--104321965
207
2.9
205
81
4
620
31
25
16
26
1.97
104321520--104322032
207
2.5
206
78
5
543
32
25
16
25
1.96
104322806--104322879
18
4.1
18
76
0
67
37
14
9
37
1.79
104323069--104323099
6
5.2
6
100
0
62
51
16
16
16
1.77
104324502--104324545
5
8.4
5
92
7
70
59
0
0
40
0.98
104325893--104325964
21
3.2
21
77
16
65
37
2
2
56
1.28
104327038--104327083
20
2.3
20
85
7
58
52
8
0
39
1.33
104330214--104330277
20
3.2
20
69
8
58
50
1
0
48
1.10
104331207--104331344
68
2.0
68
100
0
276
31
10
12
45
1.75
104332241--104332286
13
3.1
14
84
15
58
36
0
2
60
1.09
104332849--104332902
16
3.4
16
86
0
81
29
0
35
35
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104333128--104333268
17
8.6
17
65
21
61
52
0
1
45
1.14
104333166--104333214
24
2.1
22
85
14
64
55
0
2
42
1.11
104333185--104333240
15
4.0
15
73
17
57
55
0
0
44
0.99
104333195--104333257
26
2.5
25
82
10
83
58
1
0
39
1.07
104345049--104345137
18
4.9
18
83
5
99
35
13
10
40
1.78
104345050--104345137
36
2.4
36
82
0
113
36
13
10
39
1.79
104351508--104351532
2
12.5
2
100
0
50
48
0
0
52
1.00
104352105--104352205
45
2.2
45
82
3
132
44
15
15
23
1.85
104352858--104352896
15
2.5
15
83
4
51
2
20
5
71
1.17
104355182--104355233
20
2.5
20
84
9
61
57
7
0
34
1.27
104364086--104364128
22
2.0
22
86
9
61
16
4
6
72
1.24
104364210--104364271
30
2.1
30
93
0
106
24
4
14
56
1.58
104366157--104366272
14
8.1
15
70
24
58
45
0
2
50
1.21
104366191--104366286
14
7.1
14
75
14
60
47
0
2
50
1.12
104367929--104368065
73
1.9
73
90
1
222
15
15
15
54
1.72
104369446--104369502
28
2.0
28
93
0
96
40
21
17
21
1.92
104372159--104372196
18
2.1
18
95
0
67
55
0
0
44
0.99
104376125--104376157
17
2.1
16
88
11
50
30
0
0
69
0.88
104376204--104376262
21
2.8
22
80
7
61
22
0
8
69
1.15
104376233--104376293
26
2.4
25
81
7
70
29
0
3
67
1.07
104385472--104385501
15
2.0
15
93
0
51
30
0
3
66
1.07
104400585--104400630
22
2.1
21
84
11
58
56
4
19
19
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104401788--104401846
31
1.9
31
85
0
82
52
11
6
28
1.63
104402660--104402702
21
2.0
21
86
0
59
69
4
11
13
1.33
104403186--104403264
31
2.5
31
83
4
88
35
17
8
37
1.81
104404857--104404881
7
3.6
7
100
0
50
48
36
0
16
1.46
104414493--104414878
88
4.4
88
92
1
582
24
22
23
29
1.99
104414648--104414874
44
5.2
44
66
8
165
24
22
24
28
1.99
104419663--104419711
19
2.5
20
80
6
57
42
12
18
26
1.85
104431330--104431466
40
3.4
39
78
2
139
32
14
18
34
1.92
104451206--104451294
46
1.9
46
100
0
178
37
4
11
47
1.60
104457937--104457969
17
1.9
17
100
0
66
24
27
6
42
1.78
104472796--104472848
16
3.4
16
76
10
56
32
0
5
62
1.19
104475170--104475194
7
3.6
7
100
0
50
16
0
36
48
1.46
104476787--104476873
31
2.8
31
82
3
95
39
10
16
34
1.82
104477348--104477390
21
2.0
21
86
0
59
13
11
4
69
1.33
104478204--104478262
31
1.9
31
85
0
82
28
6
11
52
1.63
104479047--104479105
27
2.2
27
84
6
75
33
3
3
59
1.31
104479433--104479478
22
2.1
21
84
11
58
19
19
4
56
1.58
104490218--104490247
13
2.3
13
94
0
51
23
0
3
73
0.98
104491355--104491393
20
1.9
21
84
5
53
28
0
20
51
1.48
104502156--104502322
83
2.0
83
97
0
316
29
16
19
35
1.93
104510399--104510482
25
3.3
26
80
11
93
35
21
25
17
1.95
104510525--104510681
80
2.0
79
94
1
278
37
21
26
15
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104515588--104515622
11
3.1
11
88
8
52
48
0
0
51
1.00
104515609--104515647
20
2.0
20
100
0
78
58
0
5
35
1.20
104517111--104517178
29
2.3
29
85
5
93
45
1
1
51
1.19
104518661--104518724
30
2.1
30
97
0
119
46
14
12
26
1.79
104521553--104521588
18
2.1
17
89
5
54
52
0
0
47
1.00
104521555--104521597
18
2.4
18
84
7
52
55
0
2
41
1.12
104525745--104525802
31
1.9
30
86
6
82
34
15
5
44
1.69
104527878--104527978
34
2.9
34
79
7
96
29
11
16
41
1.84
104528055--104528152
46
2.2
45
81
5
108
25
20
17
36
1.94
104530851--104530894
18
2.4
20
82
17
60
25
2
0
72
0.96
104531278--104531308
11
2.8
11
90
0
53
32
0
0
67
0.91
104531429--104531491
30
2.1
30
93
0
108
58
15
1
23
1.46
104531522--104531552
14
2.2
14
94
0
53
61
12
6
19
1.53
104533045--104533082
18
2.1
18
90
0
58
0
50
0
50
1.00
104533049--104533081
11
2.9
12
91
8
52
0
51
0
48
1.00
104533544--104533614
3
23.3
3
74
8
63
30
1
5
61
1.27
104533556--104533617
23
2.8
22
87
4
81
32
1
8
58
1.37
104533551--104533625
23
3.2
23
80
10
64
32
2
9
56
1.45
104535281--104535358
32
2.5
31
78
12
88
44
1
5
48
1.32
104535435--104535489
12
4.5
12
88
4
74
38
0
3
58
1.16
104535435--104535489
3
18.0
3
84
3
65
38
0
3
58
1.16
104535916--104535960
22
2.0
24
91
8
76
57
0
17
24
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104535916--104535971
22
2.5
22
83
16
64
53
1
17
26
1.54
104536332--104536359
10
2.8
10
100
0
56
32
0
17
50
1.47
104541062--104541128
33
2.1
32
85
2
89
53
7
20
17
1.68
104541454--104541501
25
1.9
25
83
8
62
75
0
4
20
0.97
104541450--104541502
24
2.3
23
84
12
65
73
0
3
22
0.99
104541465--104541537
17
4.2
17
73
13
60
64
0
1
34
1.02
104541478--104541530
18
3.0
18
73
13
56
60
0
1
37
1.08
104541481--104541539
18
3.4
18
71
13
52
61
0
1
37
1.07
104541478--104541548
35
2.0
34
84
10
90
57
0
2
39
1.13
104541687--104541720
11
3.2
11
91
4
52
73
0
0
26
0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356