Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  346  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110792583--110792661
38
2.2
36
84
11
99
22
17
21
37
1.94
110792936--110792992
30
1.9
30
100
0
114
43
3
3
49
1.36
110793416--110793441
13
2.0
13
100
0
52
38
0
15
46
1.46
110796404--110796488
42
2.0
42
97
0
161
38
2
14
44
1.58
110797179--110797212
17
1.9
18
88
5
52
50
11
0
38
1.39
110805315--110805436
47
2.6
47
98
0
235
32
9
27
29
1.89
110805315--110805733
94
4.6
94
89
8
693
32
8
28
29
1.87
110805404--110805476
34
2.2
33
88
7
112
32
10
26
30
1.90
110805362--110805517
81
1.9
81
100
0
312
33
10
26
29
1.89
110805443--110805733
47
6.1
47
95
1
528
32
8
28
29
1.86
110805436--110805740
96
3.2
96
96
1
569
33
7
28
30
1.86
110805443--110805733
143
2.0
141
97
1
546
32
8
28
29
1.86
110805655--110805908
39
6.2
39
67
28
136
32
7
30
30
1.84
110805707--110805767
27
2.3
27
100
0
122
36
0
26
37
1.57
110805774--110805950
47
3.7
47
86
1
228
32
7
31
28
1.86
110805571--110805947
209
1.8
207
90
3
605
32
7
29
29
1.85
110822040--110822094
15
3.4
16
80
16
53
50
1
0
47
1.11
110822060--110822094
18
2.0
17
88
5
52
54
0
0
45
0.99
110822043--110822320
119
2.3
120
90
2
436
48
5
1
44
1.35
110824228--110824264
19
1.9
19
94
0
65
29
18
18
32
1.96
110825292--110825321
15
2.0
15
93
0
51
50
20
23
6
1.71
110826467--110826514
20
2.4
19
80
16
53
39
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110828868--110828902
11
3.2
11
88
11
54
0
54
0
45
0.99
110829385--110829429
22
2.0
23
83
12
58
31
2
11
55
1.47
110829661--110829697
19
1.9
19
88
0
56
40
2
5
51
1.39
110831855--110831898
19
2.3
20
84
7
56
27
20
11
40
1.86
110836083--110836303
42
5.2
42
62
21
118
27
25
23
23
2.00
110836029--110836378
86
4.1
86
90
1
504
26
22
25
26
2.00
110836115--110836246
41
3.1
41
63
23
92
28
21
25
25
1.99
110836403--110836655
45
5.4
45
64
19
140
28
20
23
27
1.99
110836369--110836657
95
3.0
95
97
0
542
29
20
22
28
1.98
110836448--110836610
50
3.4
49
66
17
133
30
19
23
26
1.98
110836559--110836896
134
2.5
134
92
0
532
26
21
23
28
1.99
110838071--110838096
11
2.4
11
100
0
52
92
0
0
7
0.39
110838179--110838213
11
3.2
11
88
11
54
0
54
0
45
0.99
110838694--110838739
23
2.0
23
83
8
58
30
2
10
56
1.46
110838971--110839007
19
1.9
19
88
0
56
40
2
5
51
1.39
110844764--110844799
18
2.0
18
100
0
72
55
11
0
33
1.35
110846094--110846152
10
5.9
10
77
13
50
35
0
1
62
1.05
110846099--110846152
19
2.8
19
75
13
56
35
0
1
62
1.06
110846301--110846457
84
1.8
86
82
8
205
27
9
17
45
1.80
110846635--110846672
20
2.0
20
85
10
53
39
7
0
52
1.31
110850710--110850740
14
2.2
14
94
0
53
19
9
12
58
1.62
110853223--110853253
14
2.2
14
94
0
53
19
9
12
58
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110855632--110855660
7
4.1
7
100
0
58
27
31
0
41
1.56
110863267--110863303
3
12.3
3
94
0
65
29
0
2
67
1.04
110864941--110864979
20
2.0
19
85
14
53
5
12
5
76
1.11
110866526--110866555
12
2.4
13
94
5
53
13
0
0
86
0.57
110866791--110866834
24
1.9
22
86
9
61
4
20
9
65
1.38
110868172--110868279
41
2.7
41
80
1
110
31
22
18
27
1.97
110868339--110868488
40
3.8
40
78
7
160
28
20
22
28
1.98
110868795--110868825
14
2.2
14
94
0
53
16
0
32
51
1.44
110868852--110868902
22
2.4
21
80
9
59
25
0
27
47
1.53
110868915--110868948
14
2.4
14
85
0
50
23
0
20
55
1.43
110869331--110869558
43
5.3
43
79
8
234
25
17
26
30
1.97
110869331--110869558
86
2.7
86
80
5
264
25
17
26
30
1.97
110870928--110871155
47
4.9
47
82
5
221
25
14
27
32
1.95
110870937--110871155
93
2.3
94
80
6
230
24
14
27
33
1.94
110872430--110872462
15
2.1
16
88
5
50
75
3
9
12
1.14
110872430--110872471
16
2.7
15
82
13
50
76
2
7
14
1.10
110873733--110873765
17
1.9
17
93
0
57
0
0
18
81
0.68
110879866--110880095
69
3.3
69
82
2
284
38
17
21
22
1.93
110890364--110890404
21
2.0
21
85
0
55
7
51
17
24
1.70
110895788--110895948
9
18.0
9
83
1
189
35
0
16
47
1.52
110895789--110895947
27
5.9
27
87
1
212
35
0
16
47
1.52
110896053--110896108
15
3.8
15
76
21
64
51
0
1
46
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110896313--110897318
290
3.5
290
97
0
1899
37
12
13
37
1.81
110899264--110899443
61
3.0
61
96
1
335
55
17
8
18
1.67
110901799--110901848
25
2.0
25
84
11
66
40
26
4
30
1.74
110904646--110904695
25
2.0
25
84
11
66
40
26
4
30
1.74
110904913--110905255
41
8.4
41
88
0
499
18
19
27
34
1.95
110911877--110911936
26
2.3
25
82
5
66
30
3
8
58
1.44
110922979--110923007
11
2.5
12
94
5
51
62
0
0
37
0.96
110923930--110923963
4
8.5
4
86
0
50
23
2
26
47
1.66
110934141--110934169
12
2.3
13
94
5
51
75
10
6
6
1.17
110934457--110934496
20
2.0
21
90
5
64
72
2
5
20
1.15
110956520--110956553
17
2.0
17
88
0
50
70
2
0
26
1.01
110963863--110963933
31
2.3
31
82
2
81
38
2
7
52
1.44
110964020--110964133
57
2.0
57
84
3
149
51
7
10
30
1.63
110964155--110964197
16
2.6
17
75
17
54
41
0
2
55
1.12
110965131--110965172
19
2.3
19
79
4
50
23
0
7
69
1.13
110966564--110966769
102
2.0
101
83
2
261
25
14
22
37
1.92
110971727--110972069
145
2.4
144
85
3
453
37
17
14
29
1.90
110973657--110973900
79
3.1
79
94
0
425
37
9
16
36
1.82
110975351--110975421
23
3.1
23
91
4
108
25
8
9
56
1.60
110980158--110980264
46
2.3
46
93
1
130
36
14
21
28
1.92
110980106--110980290
52
3.7
51
86
8
272
33
15
22
29
1.94
110980092--110980290
98
2.0
98
94
0
344
33
15
22
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110980266--110980317
27
1.9
27
100
0
104
21
23
19
36
1.95
110980214--110980369
79
2.0
79
98
0
303
30
17
21
30
1.96
110980293--110980439
46
2.9
52
81
12
198
34
14
22
27
1.94
110980171--110980415
125
2.0
120
86
9
339
32
16
20
30
1.95
110980403--110980511
37
3.0
37
90
2
177
35
16
22
24
1.95
110981834--110981897
9
7.6
9
80
18
75
67
0
0
32
0.91
110981834--110981896
17
3.8
17
80
16
78
66
0
0
33
0.92
110983883--110983910
11
2.5
11
100
0
56
25
0
0
75
0.81
110993152--110993195
3
14.7
3
85
0
61
34
59
0
6
1.24
110993149--110993195
18
2.6
18
96
0
85
34
57
0
8
1.29
110993220--110993245
6
4.3
6
100
0
52
15
46
19
19
1.85
111003273--111003316
20
2.0
21
83
12
54
63
6
2
27
1.31
111004464--111004577
59
1.9
59
91
1
185
28
12
7
51
1.65
111007698--111007763
29
2.2
30
83
5
80
16
18
7
57
1.62
111010062--111010098
19
1.9
19
94
0
65
43
16
5
35
1.71
111014874--111015098
122
1.8
122
88
3
346
39
19
13
28
1.89
111018256--111018301
23
2.0
23
82
0
56
56
13
6
23
1.60
111018940--111018980
21
2.0
21
85
9
57
48
19
0
31
1.49
111018950--111018989
14
2.8
15
81
11
57
45
17
0
37
1.49
111019674--111019700
13
2.1
13
100
0
54
22
14
22
40
1.90
111020359--111020492
60
2.2
61
80
6
148
51
19
8
20
1.72
111020390--111020519
60
2.2
59
84
8
165
50
17
10
21
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111028375--111028596
85
2.6
85
78
9
229
42
9
13
33
1.78
111033312--111033338
12
2.2
12
100
0
54
70
0
0
29
0.88
111033398--111033452
3
18.3
3
100
0
110
67
0
0
32
0.91
111034640--111034680
20
2.0
20
85
4
55
63
0
4
31
1.15
111038396--111038425
13
2.3
13
94
0
51
76
0
23
0
0.78
111039327--111039427
38
2.5
41
71
12
102
23
19
28
27
1.99
111039329--111039463
39
3.4
39
76
8
123
24
20
27
27
1.99
111039715--111039752
3
12.7
3
94
0
67
68
2
0
28
1.03
111040116--111040153
20
1.9
20
84
10
51
47
0
10
42
1.38
111042252--111042314
30
2.1
30
82
11
76
47
0
3
49
1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356