Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  140  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45068292--45068361
25
2.8
25
93
0
113
27
22
24
25
2.00
45068409--45068477
11
6.7
11
71
14
58
34
17
11
36
1.86
45068409--45068462
20
2.7
20
94
0
90
35
16
11
37
1.84
45096935--45097090
42
3.7
42
75
3
143
29
18
25
26
1.98
45096935--45097090
84
1.9
84
87
0
231
29
18
25
26
1.98
45099223--45099400
27
6.6
27
83
3
196
29
28
15
26
1.96
45107367--45107544
27
6.6
27
84
3
205
29
28
15
26
1.96
45107388--45107543
82
1.9
81
88
3
233
29
28
15
26
1.96
45124891--45124983
33
2.8
33
86
1
125
23
22
26
26
2.00
45124880--45124953
32
2.5
28
73
23
78
22
22
25
28
1.99
45128975--45129174
46
4.3
45
78
10
170
28
17
30
24
1.97
45129898--45129931
12
2.8
12
86
0
50
35
23
29
11
1.90
45130173--45130230
29
2.0
28
87
9
82
18
22
43
15
1.88
45137635--45137797
46
3.5
47
78
10
140
28
15
28
27
1.97
45144561--45145098
150
3.6
149
85
2
720
30
25
17
26
1.98
45144555--45145196
300
2.1
299
82
5
785
29
25
17
27
1.98
45144555--45145198
50
12.9
50
79
4
627
29
25
18
27
1.98
45149713--45149752
13
3.2
13
92
7
73
7
12
0
80
0.91
45152107--45152162
24
2.4
23
84
3
67
25
5
3
66
1.29
45159218--45159412
50
3.9
50
78
2
178
26
18
26
28
1.98
45165393--45165469
40
1.9
40
89
0
118
14
14
33
37
1.86
45167559--45167588
16
1.9
15
93
6
51
43
0
23
33
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45172487--45172554
28
2.4
28
85
0
100
17
42
22
17
1.89
45199109--45199292
40
4.6
40
84
4
192
25
21
27
25
2.00
45199109--45199292
80
2.3
81
82
3
212
25
21
27
25
2.00
45209583--45209634
22
2.5
21
81
12
54
53
3
7
34
1.48
45218064--45218088
13
1.9
13
100
0
50
16
32
20
32
1.94
45219058--45219417
46
7.6
47
71
12
192
24
28
19
27
1.99
45219058--45219278
47
4.7
46
73
14
119
24
28
20
26
1.99
45232999--45233042
20
2.2
20
95
0
79
20
31
29
18
1.96
45237201--45237518
47
6.7
47
74
10
231
25
30
17
26
1.97
45237204--45237521
94
3.4
94
80
8
344
25
30
17
26
1.97
45240642--45240715
27
2.9
25
72
7
76
28
20
25
25
1.99
45244336--45244386
19
2.7
19
87
6
68
50
5
17
25
1.68
45257659--45257797
29
4.9
29
82
4
151
25
32
14
28
1.94
45262266--45262382
29
4.0
29
84
4
128
27
29
13
29
1.94
45262601--45262643
16
2.7
16
81
0
50
16
18
13
51
1.77
45263895--45263926
16
2.0
16
93
0
55
9
6
34
50
1.60
45264574--45264625
17
2.7
19
77
17
63
40
19
15
25
1.90
45267939--45268170
40
5.8
41
85
3
303
24
21
28
25
1.99
45267939--45268190
120
2.1
119
85
2
344
24
20
28
26
1.99
45267939--45268170
80
2.9
80
90
1
349
24
21
28
25
1.99
45276055--45276286
40
5.8
40
85
3
306
24
21
28
25
1.99
45276056--45276306
120
2.1
120
85
2
344
24
20
28
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45276055--45276286
80
2.9
80
90
1
349
24
21
28
25
1.99
45278877--45278915
8
5.1
8
84
9
55
69
0
0
30
0.89
45278877--45278975
3
31.7
3
71
23
55
62
1
4
32
1.20
45278869--45278996
10
12.3
10
70
20
68
60
2
4
32
1.30
45278937--45278977
7
5.7
7
86
13
57
58
0
0
41
0.98
45278934--45278972
17
2.4
17
95
4
71
58
0
0
41
0.98
45278939--45278989
21
2.5
21
87
9
70
58
1
1
37
1.20
45280612--45281144
44
12.1
44
86
3
671
27
28
15
29
1.96
45291437--45291472
7
5.0
7
86
6
54
69
0
0
30
0.89
45291437--45291534
17
6.3
15
78
15
94
63
1
4
31
1.20
45291498--45291540
21
2.1
20
86
4
59
60
2
0
37
1.10
45291509--45291548
21
1.9
21
89
0
62
60
2
2
35
1.24
45296174--45296223
20
2.4
21
87
9
68
62
2
0
36
1.07
45296187--45296258
10
7.5
10
69
7
51
58
1
2
37
1.21
45297599--45297645
24
1.9
25
86
4
69
46
2
2
48
1.25
45297603--45297669
30
2.2
30
79
12
75
50
2
1
44
1.26
45297839--45297891
13
4.1
12
80
9
52
33
26
7
32
1.84
45302331--45302364
6
5.5
6
86
6
50
0
17
0
82
0.67
45302331--45302364
13
2.7
13
90
4
52
0
17
0
82
0.67
45316931--45317154
49
4.5
49
85
3
270
25
16
28
29
1.97
45316923--45317167
98
2.5
100
83
2
307
25
17
28
28
1.98
45324211--45324420
91
2.3
90
80
6
246
30
25
12
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45325742--45325836
18
4.7
21
79
12
83
41
16
6
35
1.74
45325742--45325799
22
2.6
22
84
7
73
43
17
3
36
1.66
45325778--45325851
19
3.9
19
94
3
132
37
16
9
36
1.81
45325771--45325851
37
2.2
38
89
8
132
37
17
8
37
1.80
45325781--45325860
37
2.2
37
86
6
119
40
13
11
35
1.81
45325970--45326008
21
1.9
20
84
5
51
10
2
15
71
1.23
45326403--45326617
78
2.8
78
92
0
349
24
23
20
32
1.98
45334054--45334083
6
5.0
6
91
0
51
53
16
13
16
1.73
45334438--45334532
18
4.7
21
79
12
74
40
16
7
35
1.77
45334438--45334495
22
2.6
22
81
7
64
41
17
5
36
1.72
45334474--45334583
19
5.9
19
93
6
199
36
15
10
37
1.83
45334467--45334583
36
3.2
38
90
9
199
35
16
10
37
1.82
45334692--45334735
16
2.8
16
82
0
61
9
6
15
68
1.38
45336051--45336080
15
2.0
15
93
0
51
73
0
3
23
0.98
45336066--45336176
10
11.4
10
71
8
68
63
0
0
36
1.01
45336074--45336171
29
3.3
29
69
17
78
60
0
1
38
1.04
45336071--45336158
19
4.5
20
73
18
87
59
0
1
39
1.05
45336217--45336274
19
3.1
18
78
16
64
60
3
8
27
1.42
45336220--45336274
20
2.8
21
76
15
64
63
3
7
25
1.37
45336431--45336499
31
2.2
32
86
2
95
27
1
2
68
1.13
45336454--45336498
21
2.2
21
88
4
65
24
2
2
71
1.09
45337406--45337487
41
2.0
41
97
0
155
50
2
9
37
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45343091--45343206
46
2.5
46
92
0
196
33
2
12
51
1.53
45347265--45347534
133
2.0
134
78
7
282
23
14
20
42
1.88
45354710--45354745
18
2.0
18
88
0
54
22
38
8
30
1.83
45358013--45358053
21
2.0
21
85
0
55
26
39
7
26
1.82
45373563--45373733
93
1.8
93
91
2
281
28
28
21
21
1.98
45373558--45373726
46
3.7
45
76
15
175
28
27
21
21
1.99
45373606--45373749
46
3.1
44
71
15
114
29
27
20
22
1.98
45377472--45377751
48
5.8
48
90
0
425
28
18
25
27
1.98
45377472--45377845
96
4.0
96
80
9
409
29
18
25
27
1.98
45384174--45384249
21
3.6
21
73
3
64
19
10
38
31
1.86
45384770--45384818
11
4.5
11
89
0
62
4
8
6
81
0.97
45384769--45384811
11
3.9
11
90
0
68
2
9
6
81
0.95
45394337--45394588
55
4.7
54
81
5
257
21
24
18
36
1.95
45396160--45396256
28
3.4
28
97
1
176
26
31
14
26
1.95
45399443--45399473
16
1.9
16
93
0
53
35
16
6
41
1.74
45399635--45400714
43
24.8
43
75
11
819
30
26
16
26
1.97
45401319--45401368
25
2.0
25
100
0
100
36
20
0
44
1.52
45404415--45404452
20
1.9
20
94
0
67
28
21
21
28
1.98
45410691--45410777
43
2.0
43
82
12
108
27
29
19
22
1.98
45423118--45423162
23
2.0
22
83
12
56
31
4
17
46
1.68
45429613--45429639
14
1.9
14
100
0
54
14
3
22
59
1.51
45430508--45430542
11
3.0
11
84
15
52
51
28
8
11
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45431751--45431834
26
3.2
26
96
0
150
33
4
25
36
1.77
45433323--45433375
26
2.0
26
82
7
63
37
20
15
26
1.92
45438776--45438833
26
2.2
26
93
0
98
34
5
24
36
1.78
45440332--45440607
145
1.9
145
96
0
516
31
24
14
29
1.95
45440588--45440655
29
2.3
29
85
5
93
27
30
13
27
1.94
45440755--45440833
29
2.7
30
82
13
110
29
30
15
25
1.96
45443804--45443856
26
2.0
26
85
7
72
37
18
15
28
1.91
45445469--45445581
20
5.7
20
79
8
104
38
18
11
31
1.87
45445472--45445578
40
2.7
39
83
9
135
37
18
12
31
1.88
45445726--45445860
23
5.7
23
72
12
80
33
17
22
26
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356