genome.fa.s10.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  102  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34280099--34280496	47	8.6	48	79	13	408	31	9	31	27	1.88
34298241--34298265	13	1.9	13	100	0	50	32	56	0	12	1.36
34299548--34299671	43	3.0	42	70	13	114	25	15	27	31	1.96
34300405--34300455	20	2.7	19	82	14	54	41	0	21	37	1.54
34301149--34301309	49	3.3	49	76	7	157	28	20	28	22	1.98
34302164--34302196	15	2.1	16	88	5	50	24	30	33	12	1.91
34303632--34303718	46	1.9	45	88	4	131	29	28	19	21	1.98
34308327--34308364	8	4.6	8	90	6	58	63	2	0	34	1.09
34308320--34308371	25	2.1	24	86	10	70	63	1	0	34	1.06
34308318--34308364	16	2.9	15	80	20	51	61	2	0	36	1.08
34313190--34313415	48	4.9	47	73	10	178	29	19	24	26	1.98
34313248--34313461	90	2.4	90	84	0	266	28	19	25	27	1.99
34313295--34313453	42	3.7	41	75	12	138	28	20	25	25	1.99
34315794--34315931	64	2.2	64	92	2	224	23	29	17	29	1.97
34316196--34316272	38	2.0	38	97	0	145	46	10	2	40	1.52
34322720--34322862	43	3.3	43	79	6	148	26	16	24	32	1.96
34324717--34324774	24	2.4	23	80	11	62	18	5	12	63	1.46
34333791--34333962	93	1.8	93	94	0	308	27	29	21	21	1.99
34333784--34333959	46	3.8	46	78	12	207	28	28	21	21	1.98
34336305--34336343	20	2.0	20	90	10	62	51	30	5	12	1.62
34337420--34337510	25	3.6	25	82	5	112	30	24	19	25	1.98
34343958--34343992	18	1.9	18	88	11	54	22	11	25	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34345992--34346046	18	2.9	19	70	20	60	30	0	5	63	1.17
34353091--34353116	12	2.2	12	100	0	52	30	19	0	50	1.48
34356327--34356366	21	2.0	21	90	5	64	20	27	40	12	1.88
34363815--34363919	42	2.5	42	92	0	174	16	16	33	34	1.91
34366155--34366209	26	2.1	27	83	10	69	45	0	9	45	1.35
34366920--34366957	15	2.4	17	82	13	53	42	2	13	42	1.57
34377833--34377944	41	2.7	42	79	10	113	23	21	25	29	1.99
34381245--34381464	110	2.0	110	99	0	431	46	8	21	23	1.79
34381827--34381870	22	2.0	22	90	0	70	9	18	36	36	1.82
34381849--34381994	39	3.7	40	84	3	190	18	21	29	30	1.97
34385868--34385931	31	2.1	31	93	0	110	26	23	15	34	1.95
34386146--34386241	23	4.1	23	95	1	165	30	22	20	26	1.99
34386292--34386358	20	3.3	20	89	0	98	31	22	11	34	1.90
34386395--34386442	25	1.9	25	86	0	69	29	16	20	33	1.95
34398685--34398797	40	2.8	40	74	11	106	27	14	28	30	1.95
34403626--34403695	27	2.6	26	95	2	95	31	28	12	27	1.93
34403626--34403723	28	3.5	28	90	2	135	31	28	13	26	1.94
34408256--34408293	17	2.2	18	85	4	51	28	5	10	55	1.56
34408293--34408647	117	3.0	117	95	0	638	29	12	22	35	1.91
34409757--34409781	13	1.9	13	100	0	50	32	20	16	32	1.94
34410333--34410511	27	6.6	27	82	7	184	27	15	27	29	1.96
34410335--34410490	82	1.9	81	86	3	224	27	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34410331--34410511	82	2.2	81	81	2	220	27	14	27	29	1.96
34412049--34412191	48	3.0	48	83	1	189	25	25	21	26	2.00
34415667--34415696	12	2.5	12	100	0	60	6	46	20	26	1.75
34417952--34417988	19	1.9	19	88	0	56	21	8	5	64	1.40
34422484--34422562	37	2.1	37	95	0	140	24	32	18	24	1.97
34422681--34422860	47	3.8	47	92	0	288	27	31	8	31	1.87
34422838--34422886	24	2.0	24	100	0	98	26	32	8	32	1.86
34426309--34426385	39	2.0	39	94	0	136	31	11	14	42	1.81
34428796--34428866	27	2.6	27	86	2	88	73	4	19	2	1.13
34428787--34428848	20	3.2	19	71	15	54	77	1	16	4	1.02
34436353--34436447	44	2.2	42	78	14	104	32	23	15	28	1.95
34438547--34438613	34	2.0	34	96	0	125	28	20	23	26	1.99
34442660--34442698	20	2.0	20	89	0	60	74	10	0	15	1.07
34459582--34459651	27	2.6	27	95	2	113	31	28	12	27	1.93
34459582--34459679	28	3.5	28	90	2	135	31	28	14	25	1.95
34462792--34462913	41	2.9	41	82	9	140	23	18	27	30	1.97
34463077--34463114	18	2.1	19	90	5	60	50	0	15	34	1.45
34480144--34480168	13	1.9	13	100	0	50	32	4	24	40	1.73
34487858--34488036	27	6.6	27	82	5	173	29	27	15	27	1.96
34488582--34488606	13	1.9	13	100	0	50	32	16	20	32	1.94
34518008--34518223	40	5.5	40	91	4	325	25	27	23	23	2.00
34518008--34518227	79	2.8	79	89	4	331	25	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34524078--34524229	27	5.6	27	92	3	232	27	13	28	30	1.94
34524078--34524229	55	2.8	55	92	0	241	27	13	28	30	1.94
34531451--34531601	27	5.5	27	91	3	221	27	13	28	31	1.94
34531451--34531601	55	2.7	55	91	0	230	27	13	28	31	1.94
34536199--34536416	40	5.5	40	88	2	307	25	27	22	23	2.00
34548831--34549047	40	5.4	40	80	3	215	27	27	21	23	1.99
34556762--34556938	40	4.4	40	82	4	216	27	27	21	23	1.99
34560574--34560694	47	2.6	45	80	6	136	31	10	30	27	1.90
34560768--34560852	40	2.2	40	84	2	109	17	20	31	30	1.95
34562515--34562690	45	3.9	44	79	10	201	22	21	27	27	1.99
34565950--34566267	40	7.9	40	95	0	537	20	21	29	28	1.98
34569842--34569962	47	2.6	45	80	6	136	31	10	30	27	1.90
34570036--34570120	40	2.2	39	82	6	100	16	20	31	31	1.94
34572472--34572767	40	7.5	40	92	6	480	19	19	30	30	1.96
34576451--34576573	46	2.6	47	78	6	135	33	9	29	27	1.89
34576649--34576734	40	2.2	40	82	4	102	17	20	31	30	1.96
34577858--34577960	37	2.8	37	95	0	179	25	32	19	23	1.98
34578101--34578660	48	11.5	48	94	4	955	30	28	6	34	1.82
34584241--34584443	40	5.1	39	89	5	275	23	20	27	28	1.99
34595121--34595305	39	4.7	39	87	4	230	25	21	27	25	1.99
34595084--34595305	39	5.6	39	77	14	183	25	20	27	26	1.99
34595169--34595338	79	2.2	79	82	9	197	27	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34603097--34603267	39	4.3	40	89	3	242	25	21	27	25	1.99
34603049--34603267	39	5.6	39	78	14	195	26	21	26	25	1.99
34603097--34603290	79	2.5	78	83	9	200	26	21	27	25	1.99
34626816--34626945	40	3.3	39	84	3	170	23	21	27	26	1.99
34626816--34626980	79	2.1	79	80	2	179	25	21	27	25	1.99
34638621--34638679	29	2.0	28	83	6	73	72	0	20	6	1.06
34650486--34650607	22	5.3	22	62	21	61	25	29	11	33	1.91
34650458--34650801	47	7.3	47	92	2	532	26	30	10	33	1.89
34650479--34650826	141	2.4	141	92	5	601	26	30	10	33	1.89
34652196--34652315	56	2.1	56	98	0	231	22	23	9	45	1.81
34665905--34666137	96	2.4	98	86	3	310	29	19	27	24	1.98
34665909--34666137	48	4.7	49	80	5	225	28	19	27	24	1.99
34668343--34668604	39	6.7	40	88	7	337	24	27	22	25	2.00
34670790--34670827	19	2.0	19	100	0	76	31	21	15	31	1.94
34676218--34676376	43	3.7	43	75	6	135	27	15	24	33	1.95
34681268--34681535	40	6.7	40	95	0	473	21	27	20	30	1.98
34689999--34690050	25	2.1	25	96	0	95	28	21	11	38	1.88
34697755--34697926	93	1.8	93	92	0	290	27	27	22	22	1.99
34697748--34697923	46	3.8	46	75	12	180	28	27	21	22	1.99
34697800--34697942	46	3.1	44	75	15	130	28	27	20	23	1.99
34700313--34700401	30	3.0	30	79	11	94	56	15	17	10	1.67
34700313--34700395	15	5.6	14	73	10	58	55	16	18	9	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34700324--34700401	15	5.2	15	75	9	70	55	15	17	11	1.69
34703316--34703491	46	3.8	46	72	14	155	27	26	22	24	2.00
34703323--34703494	93	1.8	93	87	2	256	26	26	22	24	2.00
34703417--34703502	46	1.9	45	85	4	120	30	27	19	22	1.98
34712590--34712674	42	2.0	42	95	0	152	58	5	7	28	1.48
34712720--34712758	18	2.2	18	86	4	53	71	5	17	5	1.23
34720047--34720102	15	3.7	15	85	7	78	12	16	8	62	1.53
34725296--34725347	27	1.9	27	84	0	68	34	21	23	21	1.97
34728759--34728792	16	2.1	17	94	5	61	32	0	0	67	0.91
34734466--34734551	40	2.2	39	85	2	109	29	27	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344