Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  119  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40387722--40387779
10
5.7
10
76
11
64
29
27
13
29
1.94
40387722--40387782
20
3.0
20
83
9
79
27
26
13
32
1.93
40389144--40389178
11
3.3
11
92
4
54
74
8
2
14
1.17
40390251--40390300
18
2.8
18
87
0
64
76
6
14
4
1.13
40390247--40390300
6
9.2
6
77
2
56
75
5
14
3
1.12
40390339--40390373
18
1.9
18
88
11
54
57
0
20
22
1.41
40392445--40392502
10
5.7
10
76
11
64
29
27
13
29
1.94
40392445--40392505
20
3.0
20
83
9
79
27
26
13
32
1.93
40393781--40394282
47
10.6
47
92
0
752
29
29
8
33
1.86
40396947--40396998
27
1.9
27
84
0
68
65
1
25
7
1.30
40401483--40401540
10
5.7
10
76
11
64
29
27
13
29
1.94
40401483--40401543
20
3.0
20
83
9
79
27
26
13
32
1.93
40402905--40402941
11
3.3
11
92
3
56
75
8
2
13
1.13
40402905--40402941
12
3.2
12
88
11
51
75
8
2
13
1.13
40404510--40404553
22
2.0
22
95
0
79
25
36
4
34
1.76
40409300--40409343
22
2.0
22
95
0
79
25
36
4
34
1.76
40410364--40410413
18
2.8
18
87
0
64
76
6
14
4
1.13
40410360--40410413
6
9.2
6
77
2
56
75
5
14
3
1.12
40410452--40410486
18
1.9
18
88
11
54
57
0
20
22
1.41
40412555--40412612
10
5.7
10
76
11
64
29
27
13
29
1.94
40412555--40412615
20
3.0
20
83
9
79
27
26
13
32
1.93
40415972--40416428
47
9.6
47
92
1
671
29
29
8
32
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40419866--40420043
27
6.6
27
84
3
205
29
28
15
26
1.96
40419887--40420042
82
1.9
81
88
3
233
29
28
15
26
1.96
40420597--40420621
13
1.9
13
100
0
50
32
16
20
32
1.94
40425537--40425584
15
3.3
14
80
8
60
4
18
0
77
0.93
40425537--40425595
21
2.8
21
87
5
75
6
22
0
71
1.09
40426482--40426545
30
2.2
31
86
8
89
10
12
3
73
1.21
40426586--40426630
13
3.6
12
85
8
63
15
2
0
82
0.77
40426581--40426620
14
2.9
14
82
17
57
20
7
0
72
1.08
40429798--40430020
46
4.8
46
81
6
254
23
21
26
28
1.99
40429843--40430012
93
1.8
93
94
0
304
22
22
26
27
1.99
40432687--40432747
31
2.0
31
83
3
79
14
27
1
55
1.49
40432746--40432787
12
3.6
12
87
3
50
14
19
2
64
1.39
40432881--40432934
13
3.9
15
83
13
62
5
20
1
72
1.14
40436589--40436642
18
3.0
18
88
0
72
72
1
18
7
1.17
40436602--40436642
6
6.8
6
82
0
55
75
2
17
4
1.08
40436588--40436639
12
4.5
11
79
11
50
71
1
19
7
1.20
40436617--40436665
18
2.5
20
83
9
57
69
4
22
4
1.23
40441186--40441238
23
2.4
22
76
20
56
9
18
1
69
1.25
40448269--40448325
12
4.7
12
86
2
78
14
5
3
77
1.08
40456513--40456556
22
2.0
22
95
0
79
25
36
4
34
1.76
40458998--40459063
19
3.4
19
77
8
62
77
4
12
6
1.10
40458997--40459053
6
9.0
6
75
17
53
78
3
14
3
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40463130--40463173
22
2.0
22
95
0
79
25
36
4
34
1.76
40464018--40464114
30
3.2
30
77
2
106
28
15
26
28
1.96
40465751--40465807
20
2.8
20
81
2
69
24
12
35
28
1.91
40470811--40470873
33
1.9
33
84
12
85
12
25
6
55
1.60
40470871--40470926
21
2.7
21
72
5
51
8
17
1
71
1.21
40470870--40470926
14
4.1
14
75
16
57
8
17
1
71
1.19
40470888--40470991
18
5.6
18
73
10
84
6
18
3
71
1.24
40470888--40470995
6
17.7
6
70
5
74
6
18
3
71
1.23
40477981--40478022
20
2.0
21
90
4
68
21
23
14
40
1.90
40478166--40478202
19
1.9
19
94
0
65
21
8
13
56
1.63
40488302--40488337
10
3.7
10
92
7
56
88
8
2
0
0.59
40488341--40488375
17
1.9
19
88
11
56
68
11
5
14
1.37
40489404--40489459
30
1.9
28
85
7
76
53
3
30
12
1.55
40491602--40491649
15
3.3
15
73
5
53
31
0
25
43
1.55
40491596--40491655
29
2.1
29
90
0
93
30
0
28
41
1.56
40492994--40493020
10
2.7
10
100
0
54
40
29
11
18
1.85
40492994--40493042
10
4.8
10
85
5
53
36
32
8
22
1.84
40496075--40496246
79
2.2
79
82
3
211
24
21
28
25
1.99
40496022--40496244
40
5.6
39
80
8
200
25
21
27
25
1.99
40496102--40496279
79
2.2
80
81
2
198
24
21
28
24
1.99
40502228--40502269
22
1.9
22
85
0
57
14
7
4
73
1.21
40502241--40502291
12
4.0
13
85
10
70
13
5
3
76
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40512638--40512815
27
6.6
27
83
5
180
29
28
15
26
1.96
40512659--40512814
82
1.9
81
86
3
224
28
28
16
26
1.97
40516685--40516713
13
2.2
13
100
0
58
27
0
10
62
1.28
40518899--40518924
8
3.2
8
100
0
52
23
38
0
38
1.55
40519719--40519763
14
3.3
14
78
6
56
35
0
15
48
1.45
40520740--40520799
29
2.1
29
90
0
93
41
28
0
30
1.56
40520746--40520793
15
3.3
15
73
5
53
43
25
0
31
1.55
40523411--40523493
35
2.5
33
82
11
89
7
19
2
71
1.21
40526973--40527090
55
2.1
55
84
6
159
25
22
13
38
1.90
40530537--40530577
15
2.7
16
74
11
50
7
26
0
65
1.18
40530735--40530773
15
2.4
15
87
12
51
10
20
2
66
1.33
40534851--40534891
16
2.4
18
76
16
50
46
7
9
36
1.65
40538640--40538682
18
2.4
18
77
14
52
46
6
9
37
1.63
40539156--40539304
28
5.4
28
95
0
255
25
11
28
34
1.91
40541647--40541681
17
2.1
17
88
0
52
51
2
0
45
1.16
40542497--40542544
15
3.3
15
73
5
53
31
0
25
43
1.55
40542491--40542550
29
2.1
29
90
0
93
30
0
28
41
1.56
40543133--40543177
14
3.3
14
78
6
56
48
15
0
35
1.45
40544031--40544184
53
2.9
53
85
0
200
21
25
16
36
1.94
40547337--40547424
19
4.8
19
72
13
76
31
9
13
45
1.75
40547311--40547438
54
2.4
54
92
1
204
33
8
15
42
1.78
40547493--40547532
9
4.3
9
87
6
62
30
0
15
55
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40547493--40547532
19
2.2
18
90
4
62
30
0
15
55
1.41
40549126--40549169
22
2.0
22
90
0
70
36
4
34
25
1.76
40561381--40561433
23
2.4
22
76
20
56
9
18
1
69
1.25
40573196--40573261
21
3.1
21
76
8
62
28
4
33
33
1.78
40574545--40574610
29
2.2
30
81
10
73
13
4
9
72
1.24
40579210--40579257
20
2.4
20
67
0
51
33
18
27
20
1.96
40580634--40580667
18
1.9
18
88
5
52
8
35
2
52
1.47
40581683--40581813
13
9.2
13
69
19
66
12
9
6
70
1.31
40581683--40581758
30
2.6
29
78
10
91
9
14
6
69
1.34
40581737--40581802
30
2.3
30
87
10
93
15
6
3
75
1.11
40581737--40581813
14
5.6
13
78
15
75
14
5
3
76
1.10
40584753--40584790
10
3.8
10
83
13
51
21
18
31
28
1.97
40584730--40584790
20
3.0
20
83
9
63
27
14
27
29
1.95
40584754--40584791
20
1.9
20
94
0
67
18
18
34
28
1.95
40587757--40587853
30
3.2
30
75
2
106
28
15
26
28
1.96
40588796--40588841
21
2.1
22
92
8
76
17
4
4
73
1.15
40592119--40592156
10
3.8
10
83
13
51
28
31
18
21
1.97
40592118--40592155
20
1.9
20
94
0
67
28
34
18
18
1.95
40592119--40592179
20
3.0
20
83
9
63
29
27
14
27
1.95
40592129--40592175
10
4.6
10
80
15
51
31
27
14
25
1.95
40592661--40592685
13
1.9
13
100
0
50
16
32
16
36
1.90
40601308--40601343
12
3.0
12
100
0
72
16
8
0
75
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40601323--40601359
17
2.2
17
90
0
56
8
2
2
86
0.76
40613783--40613863
40
2.0
40
100
0
162
35
22
22
19
1.96
40618874--40618923
26
1.9
26
91
0
82
36
14
28
22
1.92
40625344--40625475
29
4.7
29
87
1
180
30
29
14
25
1.95
40625687--40625739
16
3.2
16
76
5
52
11
20
16
50
1.76
40630242--40630331
27
3.2
27
85
7
119
32
23
24
20
1.98
40636930--40637081
27
5.6
27
93
3
241
26
13
28
30
1.94
40636930--40637081
55
2.8
55
94
0
259
26
13
28
30
1.94
40641390--40641504
55
2.1
56
83
4
144
33
20
26
19
1.96
40641415--40641504
28
3.2
28
87
4
128
31
22
26
20
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344