genome.fa.s10.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  152  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50716051--50716129	29	2.7	30	82	13	110	30	30	13	25	1.94
50724021--50724088	29	2.3	29	85	5	93	27	30	13	27	1.94
50723910--50724236	173	1.9	174	95	0	593	30	24	14	29	1.95
50724189--50724267	29	2.7	30	82	13	110	30	30	13	25	1.94
50731817--50732038	40	5.6	40	88	4	272	25	20	27	27	1.99
50736011--50736193	64	2.8	64	77	7	181	22	30	16	30	1.96
50737096--50737137	20	2.1	20	95	0	75	28	9	11	50	1.70
50740289--50740417	46	2.8	46	91	2	206	18	20	29	31	1.96
50742661--50742700	21	1.9	21	89	0	62	27	37	17	17	1.92
50745426--50745681	43	6.0	43	73	3	178	32	27	16	23	1.95
50745409--50745651	85	2.9	85	81	4	258	34	27	14	23	1.94
50746294--50746336	22	2.0	22	95	0	77	58	11	25	4	1.52
50748836--50748883	22	2.1	24	85	14	66	39	6	0	54	1.26
50756634--50756708	22	3.3	22	65	17	62	32	10	30	26	1.90
50756446--50756715	47	5.7	47	96	0	479	29	10	32	27	1.90
50756435--50756736	141	2.1	140	88	6	473	31	9	31	27	1.88
50759164--50759238	38	2.0	38	86	5	107	30	18	26	24	1.98
50759292--50759650	198	1.8	197	90	0	583	24	22	28	25	1.99
50759292--50759637	40	8.7	40	92	1	545	24	22	28	24	1.99
50763000--50763269	47	5.7	47	95	0	470	29	10	32	27	1.89
50762989--50763290	141	2.1	140	87	6	464	31	8	31	28	1.88
50767841--50768006	40	4.2	40	85	2	210	31	19	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50768056--50768159	40	2.6	40	84	1	118	31	18	19	30	1.95
50767902--50768273	154	2.4	155	83	0	485	30	18	21	29	1.97
50768320--50768360	21	2.0	21	85	9	57	43	4	2	48	1.37
50768516--50768565	14	3.6	14	75	2	57	24	0	26	50	1.50
50768595--50768658	14	4.5	14	82	2	56	20	0	37	42	1.52
50768592--50768721	7	18.7	7	70	7	50	21	0	33	45	1.52
50768592--50768658	21	3.2	20	81	10	71	20	0	35	43	1.53
50769776--50769830	20	2.6	21	77	8	58	69	5	0	25	1.10
50769973--50770071	41	2.4	41	83	8	114	39	11	20	29	1.87
50770171--50770195	11	2.3	11	100	0	50	8	36	0	56	1.29
50774245--50774399	43	3.6	43	86	0	202	26	16	27	29	1.97
50781186--50781224	18	2.2	18	86	4	53	30	5	20	43	1.73
50784313--50784501	82	2.3	81	86	3	254	23	16	19	40	1.91
50784333--50784493	40	4.0	40	81	5	180	24	16	19	39	1.91
50784313--50784501	41	4.6	41	82	3	220	23	16	19	40	1.91
50792503--50792622	22	5.4	22	63	28	65	34	13	29	23	1.93
50792461--50792717	137	1.9	138	90	0	417	35	11	27	24	1.90
50792590--50792714	22	5.4	21	67	23	65	36	11	26	25	1.89
50792430--50792717	47	6.2	47	88	3	395	35	10	28	26	1.90
50792731--50792821	46	2.0	46	86	0	128	34	6	31	27	1.83
50801120--50801146	9	3.0	9	100	0	54	44	0	11	44	1.39
50802173--50802225	23	2.3	23	96	0	97	28	9	15	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50802173--50802242	23	3.0	23	89	0	77	30	10	14	45	1.77
50811660--50811705	23	2.0	23	87	8	67	21	23	19	34	1.96
50811662--50811713	23	2.3	23	83	6	61	21	26	19	32	1.97
50826297--50826629	166	2.0	166	97	0	621	28	19	24	27	1.99
50840166--50840280	27	4.3	26	87	5	149	36	23	23	16	1.94
50840166--50840280	54	2.1	54	88	3	169	36	23	23	16	1.94
50841867--50841950	26	3.2	26	94	0	141	35	23	4	35	1.76
50845311--50845488	27	6.6	27	85	3	214	26	14	28	30	1.95
50845312--50845467	82	1.9	81	89	3	242	26	14	28	30	1.95
50845308--50845488	82	2.2	81	84	2	238	27	14	27	30	1.95
50849633--50849708	37	2.1	37	89	0	116	26	32	18	22	1.97
50849829--50850171	47	7.2	47	88	3	497	29	30	8	31	1.86
50849829--50850171	144	2.4	143	91	1	546	29	30	8	31	1.86
50851803--50851880	39	2.0	39	94	0	138	37	29	10	23	1.88
50858438--50858494	16	3.5	17	81	11	66	47	1	0	50	1.11
50858420--50858490	21	3.7	20	71	19	60	45	1	1	52	1.18
50858437--50858494	5	10.7	6	72	20	56	46	1	0	51	1.11
50860453--50860496	20	2.2	20	84	8	54	27	27	11	34	1.91
50875258--50875428	93	1.8	93	91	2	281	30	26	19	23	1.98
50875250--50875421	46	3.7	46	75	14	174	31	26	18	23	1.97
50875253--50875444	46	4.2	46	72	18	134	31	25	18	24	1.98
50875847--50875906	30	2.0	30	86	0	84	33	25	5	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50877743--50877782	20	2.0	21	90	5	64	27	5	10	57	1.52
50884819--50884883	28	2.3	28	89	0	103	32	27	9	30	1.88
50884989--50885079	28	3.2	28	90	4	139	20	24	23	31	1.98
50884989--50885104	56	2.1	55	82	9	137	19	24	21	34	1.96
50895078--50895305	48	4.7	49	76	9	166	23	30	19	26	1.98
50895222--50895486	46	5.7	44	74	12	142	23	29	20	27	1.98
50895365--50895489	47	2.7	45	77	11	128	23	26	20	29	1.99
50896691--50896777	43	2.0	42	86	6	122	25	17	24	33	1.96
50905762--50905787	9	2.9	9	100	0	52	46	7	11	34	1.69
50905917--50906063	23	6.3	23	75	9	111	23	23	19	34	1.97
50905917--50906063	46	3.2	46	83	3	179	23	23	19	34	1.97
50915744--50915800	29	2.0	29	96	0	105	36	5	14	43	1.67
50924351--50924573	40	5.6	40	86	3	245	26	27	20	24	1.99
50924505--50924582	40	1.9	41	82	10	97	26	28	21	23	1.99
50932194--50932362	40	4.2	40	90	0	223	28	28	18	24	1.98
50947532--50947564	15	2.2	15	94	0	57	57	12	12	18	1.64
50950549--50950726	51	3.6	49	81	5	216	28	25	19	26	1.99
50950542--50950726	100	1.9	100	93	1	318	28	25	20	25	1.99
50957843--50958090	41	6.1	40	79	3	210	37	16	25	20	1.93
50957858--50958090	82	2.9	80	82	3	268	38	16	25	20	1.92
50959894--50959931	19	2.0	19	94	0	67	23	2	36	36	1.69
50962233--50962372	44	3.3	42	82	7	131	25	19	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50962219--50962372	43	3.6	42	77	10	141	24	18	24	32	1.97
50962233--50962390	43	3.7	43	75	10	126	24	18	25	30	1.98
50965190--50965255	24	2.8	24	77	9	80	28	21	24	25	1.99
50967420--50967564	40	3.6	40	80	9	154	24	22	27	25	2.00
50967419--50967570	80	1.9	80	82	5	191	25	22	27	25	2.00
50976705--50976835	44	3.0	43	83	8	160	25	16	25	32	1.96
50978834--50978898	24	2.7	24	82	0	76	27	18	24	29	1.98
50980946--50981124	27	6.6	27	92	1	268	30	28	14	26	1.95
50980946--50981123	82	2.2	82	89	2	268	30	28	14	25	1.95
50989102--50989279	27	6.6	27	92	3	268	30	28	14	26	1.95
50989102--50989279	55	3.3	54	90	3	277	30	28	14	26	1.95
50989775--50989817	22	2.0	21	82	8	52	25	18	2	53	1.56
50992043--50992168	46	2.7	46	88	0	180	21	19	26	32	1.97
50992392--50992429	19	2.0	20	85	15	53	36	0	23	39	1.55
50998776--50998813	19	2.0	20	85	15	53	36	0	23	39	1.55
51012638--51012766	64	2.0	64	98	0	249	32	27	14	24	1.95
51013535--51013590	30	1.9	28	86	13	78	10	14	14	60	1.58
51013539--51013590	15	3.7	14	80	14	54	9	13	15	61	1.56
51015950--51016120	45	3.7	46	76	15	192	22	21	27	29	1.99
51015947--51016115	92	1.8	92	93	2	295	21	21	28	28	1.99
51019070--51019114	15	3.0	15	83	0	63	11	11	15	62	1.55
51021520--51021692	46	3.7	46	73	13	165	23	19	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021517--51021687	93	1.8	93	88	0	261	23	19	27	29	1.98
51025038--51025193	68	2.3	67	78	11	154	20	28	16	35	1.94
51031366--51031536	41	4.2	39	85	5	171	37	15	26	20	1.92
51031366--51031534	82	2.1	82	82	2	205	37	15	26	20	1.92
51039521--51039636	23	5.0	23	90	5	164	26	21	22	29	1.99
51039521--51039636	47	2.5	47	88	8	166	26	21	22	29	1.99
51039830--51039893	31	2.1	31	93	0	110	37	15	23	23	1.93
51047447--51047514	20	3.4	20	91	0	100	36	10	20	32	1.86
51047564--51047658	24	4.0	24	84	6	122	27	21	23	28	1.99
51047564--51047658	47	2.0	49	85	8	133	27	21	23	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344