genome.fa.s10.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  121  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40988098--40988355	120	2.2	119	86	7	380	29	27	19	23	1.98
40991219--40991451	27	8.6	27	86	6	287	27	18	17	36	1.93
40991220--40991443	81	2.8	81	89	4	319	27	19	17	35	1.94
40991433--40991533	27	3.7	27	86	2	132	26	7	23	41	1.82
40991230--40991505	54	5.1	54	83	4	272	28	17	17	36	1.92
40991220--40991478	81	3.2	80	83	5	299	27	17	18	36	1.93
40994362--40994566	27	7.6	27	87	2	277	24	17	19	38	1.92
40994525--40994639	27	4.3	27	77	12	76	27	10	20	40	1.85
40994362--40994593	81	2.9	80	81	5	263	25	16	19	38	1.92
40994551--40994702	27	5.6	27	80	8	157	26	6	21	45	1.76
41003093--41003135	5	8.6	5	100	0	86	0	39	0	60	0.97
41005750--41005841	40	2.3	41	81	9	102	27	25	25	22	2.00
41010656--41010753	30	3.3	30	67	13	76	26	15	30	27	1.96
41012950--41013017	30	2.3	30	82	5	84	10	22	1	66	1.30
41013086--41013142	5	11.0	5	75	20	55	3	17	1	77	1.00
41013086--41013142	16	3.7	14	82	15	60	3	17	1	77	1.00
41013086--41013153	21	3.2	21	76	15	61	2	17	2	76	1.04
41014093--41014245	82	1.9	80	80	2	180	38	11	7	42	1.70
41015279--41015338	17	3.6	16	74	17	50	26	28	10	35	1.89
41015735--41015831	30	3.2	30	71	8	81	27	15	27	28	1.96
41021496--41021570	36	2.1	36	94	0	132	32	20	12	36	1.89
41024189--41024241	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41028994--41029058	20	3.3	19	73	16	51	38	16	21	23	1.93
41029208--41029295	41	2.1	42	83	4	108	11	28	3	56	1.50
41029276--41029310	12	2.8	12	91	4	52	11	20	0	68	1.20
41029272--41029317	18	2.5	19	82	3	58	8	19	0	71	1.11
41031928--41031965	20	1.9	20	89	10	60	50	21	13	15	1.78
41039762--41039823	10	5.9	10	74	10	52	33	32	3	30	1.74
41039762--41039824	21	3.0	21	88	2	90	33	33	3	30	1.74
41044652--41044713	10	5.9	10	74	10	52	33	32	3	30	1.74
41044652--41044714	21	3.0	21	88	2	90	33	33	3	30	1.74
41045032--41045056	13	1.9	13	100	0	50	76	0	8	16	1.02
41047906--41047971	21	3.0	22	86	4	80	30	4	30	34	1.78
41051159--41051202	22	2.0	22	95	0	79	25	36	4	34	1.76
41053118--41053164	17	2.8	17	83	0	58	6	12	4	76	1.12
41055351--41055415	20	3.3	19	73	16	51	38	16	21	23	1.93
41056593--41056689	30	3.2	30	75	2	106	28	26	15	28	1.96
41059257--41059327	37	1.9	37	86	11	101	76	2	18	2	1.04
41059267--41059316	6	8.2	6	83	14	50	76	2	20	2	0.99
41059420--41059476	30	1.9	30	85	7	80	61	0	21	17	1.35
41059978--41060074	30	3.2	30	75	2	106	28	26	15	28	1.96
41062459--41062515	21	2.7	21	83	2	60	29	5	31	33	1.80
41062484--41062526	22	1.9	23	90	4	70	25	4	32	37	1.77
41065169--41065234	30	2.2	31	78	13	75	42	15	25	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41085118--41085149	12	2.7	12	100	0	64	81	6	6	6	0.99
41086818--41086859	11	3.8	11	83	0	57	78	4	4	11	1.06
41086818--41086858	12	3.6	12	87	6	59	80	4	4	9	1.00
41088524--41088565	11	3.7	11	81	15	50	80	2	4	11	0.95
41090234--41090276	11	3.8	11	96	3	77	76	6	6	9	1.15
41090233--41090275	12	3.7	12	93	6	79	79	6	6	6	1.07
41095940--41095996	20	2.8	20	86	5	80	82	3	8	5	0.93
41095960--41096002	10	4.0	10	80	14	50	88	2	6	2	0.68
41095960--41096001	13	3.3	13	83	3	50	90	2	4	2	0.60
41097932--41097975	20	2.2	20	91	0	70	22	9	36	31	1.86
41099625--41099729	47	2.2	47	85	8	133	14	24	1	59	1.46
41100835--41100900	29	2.3	28	87	12	91	4	13	4	77	1.08
41100855--41100932	33	2.3	33	82	12	88	10	10	3	75	1.16
41112745--41113003	40	6.5	40	92	2	407	23	22	26	27	1.99
41112745--41113003	119	2.2	119	91	2	414	23	22	26	27	1.99
41124645--41124690	22	2.1	22	88	4	67	50	17	6	26	1.70
41131728--41131845	43	2.8	43	75	5	114	26	16	24	32	1.96
41135826--41135994	40	4.2	40	93	0	284	23	20	28	27	1.98
41135826--41136024	80	2.5	80	86	0	218	23	20	27	28	1.99
41140760--41140931	93	1.8	93	85	2	238	22	20	27	29	1.99
41144117--41144190	36	2.1	36	94	0	130	35	2	21	40	1.68
41156096--41156225	71	1.9	70	84	7	176	20	29	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41156094--41156251	68	2.3	70	80	7	171	20	27	15	36	1.93
41160725--41160788	28	2.3	28	91	0	101	18	17	37	26	1.93
41161105--41161335	27	8.6	27	84	6	249	40	19	9	30	1.83
41161105--41161335	81	2.9	80	85	1	318	40	19	9	30	1.83
41161289--41161404	27	4.3	27	82	4	110	38	17	14	29	1.89
41161105--41161364	81	3.2	81	81	6	305	40	19	9	30	1.83
41169464--41169526	26	2.5	26	97	2	119	42	14	3	39	1.61
41169484--41169526	13	3.3	13	73	0	50	41	13	2	41	1.57
41172953--41173109	43	3.7	43	77	4	165	26	18	24	29	1.98
41177446--41177489	22	2.0	22	82	8	54	38	13	18	29	1.89
41177716--41177936	40	5.6	40	90	2	331	28	26	22	22	1.99
41177716--41177936	79	2.8	80	92	2	349	28	26	22	22	1.99
41177716--41177936	119	1.9	119	90	3	356	28	26	22	22	1.99
41186071--41186114	22	2.0	22	82	8	54	38	13	18	29	1.89
41186340--41186559	40	5.6	40	90	3	331	28	26	22	22	1.99
41186340--41186559	79	2.8	79	91	2	345	28	26	22	22	1.99
41191629--41191672	19	2.4	19	85	7	56	50	0	9	40	1.34
41191686--41191710	12	2.1	12	100	0	50	40	0	8	52	1.31
41192789--41192859	25	2.9	25	82	12	69	4	26	1	67	1.17
41192760--41192837	20	4.2	18	70	15	50	3	30	1	64	1.20
41192738--41192856	62	1.9	62	82	5	150	4	27	0	67	1.15
41193811--41193855	15	3.1	14	81	12	56	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41193819--41193855	16	2.4	15	86	4	56	72	0	0	27	0.84
41198216--41198294	31	2.5	31	93	0	131	27	27	15	29	1.96
41198318--41198407	41	2.2	41	89	2	135	35	22	14	27	1.93
41198553--41198650	26	3.8	26	90	1	153	27	22	23	26	1.99
41200406--41200484	31	2.6	31	91	2	124	27	26	15	30	1.96
41200512--41200599	42	2.1	42	91	0	140	36	19	13	30	1.90
41200744--41200893	26	5.8	26	91	0	239	27	22	23	26	2.00
41200744--41200893	52	2.9	52	94	1	266	27	22	23	26	2.00
41206285--41206480	50	3.9	49	81	3	230	28	26	18	26	1.98
41206298--41206481	101	1.8	99	85	2	260	28	26	18	26	1.98
41209256--41209343	43	2.0	43	91	4	142	38	15	12	32	1.85
41211562--41211801	49	4.8	49	78	3	237	30	25	18	25	1.98
41211561--41211799	100	2.4	100	82	3	277	30	25	18	25	1.98
41214542--41214610	28	2.5	28	85	0	84	28	13	27	30	1.94
41220937--41221047	38	2.9	38	80	2	123	21	21	24	32	1.98
41229124--41229228	40	2.6	40	87	3	140	29	19	23	27	1.98
41229142--41229280	40	3.5	40	87	5	174	24	18	27	29	1.98
41236243--41236277	15	2.3	15	95	0	61	42	5	20	31	1.75
41237225--41237371	40	3.7	39	84	7	152	25	18	26	29	1.98
41240657--41240734	39	2.0	39	100	0	156	35	5	30	28	1.79
41244400--41244434	15	2.3	15	95	0	61	42	5	20	31	1.75
41245386--41245527	40	3.6	40	87	5	182	26	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41246948--41247020	1	73.0	1	100	0	146	100	0	0	0	0.00
41249416--41249725	27	11.7	27	85	5	366	38	21	10	30	1.86
41249416--41249724	53	5.8	53	84	6	365	38	21	10	30	1.86
41249442--41249778	27	12.7	26	80	9	125	38	21	9	30	1.86
41249769--41250010	27	9.0	27	86	1	324	38	19	17	24	1.93
41262769--41262949	40	4.6	40	86	4	226	23	23	28	24	2.00
41267270--41267445	46	3.8	45	77	12	187	21	20	29	28	1.98
41267266--41267438	93	1.9	93	91	2	285	21	20	30	27	1.98
41273973--41274193	40	5.6	39	83	7	268	22	23	28	25	1.99
41273977--41274193	80	2.7	80	89	2	314	21	23	29	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344