genome.fa.s10.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  136  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45821105--45821147	20	2.3	18	84	8	50	44	2	0	53	1.13
45822012--45822069	18	3.4	18	86	6	77	27	8	25	37	1.85
45825240--45825282	20	2.2	20	86	0	59	20	9	13	55	1.66
45827676--45827719	21	2.1	21	86	0	61	15	9	22	52	1.71
45831923--45831947	12	2.1	12	100	0	50	40	0	44	16	1.47
45833519--45833574	24	2.3	24	84	6	78	10	23	37	28	1.88
45835157--45835189	7	4.7	7	85	14	50	87	0	9	3	0.63
45846357--45846448	28	3.3	28	93	3	150	34	28	6	30	1.82
45846554--45846643	27	3.2	27	79	7	101	20	24	23	32	1.98
45846564--45846654	27	3.2	28	78	4	76	21	26	19	31	1.98
45847728--45847761	10	3.3	10	84	8	50	29	8	8	52	1.62
45849123--45849150	6	4.7	6	100	0	56	50	14	17	17	1.79
45849175--45849207	6	5.5	6	100	0	66	48	15	18	18	1.81
45849117--45849247	57	2.3	58	86	6	196	41	16	19	22	1.89
45849450--45849536	40	2.2	40	87	4	122	39	19	9	32	1.83
45849926--45849974	20	2.5	20	96	0	89	57	0	2	40	1.10
45850176--45850236	24	2.5	23	80	15	61	49	4	0	45	1.23
45850184--45850263	35	2.3	35	85	8	103	50	5	0	45	1.23
45851218--45851350	48	2.8	48	82	0	167	27	19	27	26	1.99
45856871--45856938	33	2.1	33	97	0	127	42	14	10	32	1.80
45859222--45859260	16	2.4	16	91	0	69	28	15	28	28	1.96
45862959--45863072	29	4.0	29	83	6	135	28	30	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45862950--45863060	58	1.9	58	87	1	161	27	31	15	25	1.95
45863292--45863332	8	5.5	8	77	16	52	9	24	26	39	1.86
45874462--45874514	27	2.0	27	85	7	72	28	24	0	47	1.52
45874462--45874505	20	2.3	19	88	4	61	27	22	0	50	1.50
45875642--45875675	13	2.7	12	90	9	50	0	23	2	73	0.97
45875734--45875802	35	2.0	35	88	5	104	39	4	0	56	1.19
45877176--45877263	43	2.0	43	97	0	167	31	20	19	28	1.97
45885406--45885452	22	2.2	21	84	3	58	36	21	8	34	1.84
45885423--45885501	19	4.2	19	90	9	126	35	16	10	37	1.82
45885423--45885495	36	2.0	38	94	5	132	35	15	10	38	1.82
45885424--45885511	36	2.4	35	85	14	117	35	15	10	38	1.82
45887110--45887294	79	2.3	82	83	7	220	24	27	22	25	2.00
45887091--45887294	40	5.1	40	80	11	190	24	26	22	25	2.00
45904821--45904971	27	5.6	27	94	1	239	30	29	13	27	1.94
45904821--45904996	55	3.2	55	89	1	246	31	29	13	26	1.93
45904821--45904971	82	1.9	81	91	1	248	30	29	13	27	1.94
45915243--45915294	22	2.4	22	83	6	61	25	23	25	26	2.00
45916090--45916246	73	2.2	71	80	8	183	34	4	11	49	1.59
45916507--45916615	54	2.0	54	96	3	202	27	25	13	33	1.94
45916561--45916635	30	2.5	30	75	0	78	29	26	14	29	1.95
45917119--45917143	13	1.9	13	100	0	50	16	32	16	36	1.90
45925606--45925670	30	2.2	30	94	0	112	24	27	29	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45927278--45927470	105	1.8	105	80	4	228	25	23	21	29	1.99
45928191--45928300	39	2.8	40	91	5	172	32	12	24	30	1.92
45934017--45934190	91	1.9	91	85	2	242	23	17	18	40	1.91
45935793--45935818	12	2.2	12	100	0	52	50	7	0	42	1.31
45936303--45936480	27	6.6	27	83	3	196	26	14	28	30	1.95
45936304--45936459	82	1.9	81	88	3	233	26	15	28	29	1.96
45939251--45939275	12	2.1	12	100	0	50	32	20	24	24	1.98
45944139--45944319	34	5.3	33	92	4	263	18	16	35	29	1.93
45945647--45945962	49	6.6	45	70	15	165	28	19	27	23	1.99
45945647--45945962	94	3.3	93	79	6	276	28	19	27	23	1.99
45948805--45948939	41	3.2	42	67	11	114	25	25	17	31	1.97
45948803--45948980	84	2.1	83	85	5	243	28	26	17	27	1.98
45950826--45950855	15	2.1	15	93	6	53	36	26	6	30	1.82
45953967--45954056	41	2.2	41	79	0	108	22	15	37	24	1.93
45955061--45955109	24	2.0	24	96	0	89	12	26	30	30	1.92
45958993--45959168	46	3.8	46	74	12	180	21	21	28	28	1.98
45958990--45959161	93	1.8	93	92	0	290	22	21	28	27	1.99
45962092--45962171	15	5.4	15	77	7	83	10	18	13	57	1.64
45962083--45962170	30	3.0	30	80	11	92	10	18	15	55	1.68
45964361--45964448	27	3.3	26	89	7	131	38	23	23	13	1.91
45964549--45964624	26	2.8	27	88	4	100	31	13	21	34	1.91
45966067--45966150	26	3.2	26	96	0	150	36	25	4	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45966616--45966772	68	2.3	68	82	5	185	25	14	18	42	1.88
45970559--45970781	40	5.6	40	81	4	209	24	20	29	26	1.99
45978474--45978696	40	5.6	40	82	4	218	24	21	29	25	1.99
45978549--45978731	79	2.3	80	80	1	208	25	21	29	24	1.99
45990634--45990686	22	2.4	22	72	12	54	32	24	20	22	1.98
45990829--45990951	41	3.0	41	89	0	183	24	29	23	22	1.99
45991197--45991414	27	8.1	27	78	6	181	31	7	18	42	1.78
45991216--45991398	81	2.3	81	80	7	203	30	7	18	44	1.76
45991328--45991437	27	4.1	27	83	5	116	29	8	21	40	1.82
45991378--45991437	26	2.3	27	88	2	95	31	10	23	35	1.88
45992798--45992940	41	3.5	41	89	3	211	25	25	23	25	2.00
45998052--45998089	19	2.0	19	85	10	51	26	31	5	36	1.79
46005367--46005587	93	2.4	94	78	11	222	30	19	27	23	1.98
46005367--46005587	47	4.7	47	77	11	181	30	19	27	23	1.98
46006427--46006679	126	2.0	126	87	3	366	21	21	31	25	1.98
46011445--46011524	27	2.9	27	83	7	99	17	22	22	37	1.94
46018559--46018671	27	4.2	27	84	7	140	14	23	23	38	1.92
46018559--46018671	54	2.1	54	88	3	165	14	23	23	38	1.92
46022736--46022877	67	2.1	70	88	5	209	19	27	21	30	1.98
46022845--46022904	27	2.3	27	85	2	77	21	23	20	35	1.96
46025210--46025287	39	2.0	39	92	0	129	21	10	30	37	1.87
46027066--46027657	47	12.6	47	89	0	855	32	10	30	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46027093--46027638	188	2.9	188	95	0	966	32	11	30	25	1.92
46027776--46027855	37	2.2	37	86	4	108	23	17	31	27	1.97
46033576--46033616	21	2.0	21	85	9	57	68	2	24	4	1.22
46040889--46040979	42	2.2	42	95	0	164	21	36	24	17	1.95
46044737--46044971	27	8.7	27	73	10	178	42	18	8	30	1.81
46044711--46044833	54	2.3	54	80	8	126	39	20	10	29	1.86
46044745--46044969	81	2.8	80	82	5	256	42	18	8	30	1.80
46044737--46044998	27	9.7	27	76	1	157	40	19	9	30	1.83
46045247--46045356	41	2.7	41	82	2	132	22	23	27	26	2.00
46045500--46045561	22	2.8	22	76	9	63	17	22	25	33	1.96
46049954--46050086	27	5.0	27	83	5	155	29	12	20	38	1.88
46056937--46057067	43	3.1	41	81	7	147	32	27	17	22	1.97
46058189--46058217	14	2.0	15	93	6	51	48	20	0	31	1.50
46058707--46058739	16	1.9	18	88	11	52	33	12	6	48	1.65
46059789--46059831	22	2.0	22	81	9	52	9	23	0	67	1.19
46065577--46065705	39	3.1	39	81	16	177	11	27	24	36	1.90
46065590--46065687	47	2.1	47	94	0	169	10	29	25	34	1.89
46065637--46065724	39	2.3	39	85	0	113	12	26	23	37	1.90
46073387--46073444	6	9.7	6	77	7	55	3	36	3	56	1.33
46073386--46073450	12	5.4	12	72	7	60	6	35	4	53	1.46
46073384--46073450	30	2.2	30	81	5	82	5	35	5	52	1.51
46076442--46076497	22	2.5	22	91	0	85	17	30	21	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46079200--46079249	21	2.4	21	100	0	100	42	4	20	34	1.70
46079859--46079938	40	2.0	40	100	0	160	42	10	12	35	1.76
46083808--46084028	40	5.6	40	91	2	331	26	23	27	22	1.99
46086748--46086801	26	2.1	25	82	3	63	3	24	1	70	1.13
46086973--46087018	3	15.3	3	100	0	92	67	0	0	32	0.91
46094223--46094282	12	4.4	13	80	18	61	1	23	3	71	1.10
46094223--46094282	30	2.0	30	87	3	86	1	23	3	71	1.10
46094466--46094498	3	11.3	3	93	6	59	69	0	0	30	0.88
46094770--46094972	104	2.0	104	98	0	397	29	22	17	30	1.97
46095698--46095804	42	2.6	42	80	4	110	31	14	21	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344