genome.fa.s10.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  103  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34739100--34739140	20	2.0	20	86	9	57	21	9	2	65	1.34
34741657--34741879	39	5.7	40	85	8	266	25	22	27	24	2.00
34741657--34741879	79	2.8	81	84	9	282	25	22	27	24	2.00
34741657--34741912	79	3.3	79	81	10	217	26	21	27	24	1.99
34763606--34763728	22	5.3	22	62	24	56	33	12	30	23	1.91
34763657--34763726	24	3.0	24	67	29	60	31	14	32	21	1.93
34763487--34763872	47	8.2	47	91	0	601	34	11	28	25	1.91
34763886--34764068	46	4.0	46	92	0	285	34	8	32	24	1.85
34765558--34765913	40	8.9	40	89	0	514	23	21	29	25	1.99
34769868--34770248	47	8.1	47	89	1	532	33	10	30	25	1.90
34769962--34770035	23	3.1	24	69	23	75	36	8	27	28	1.85
34769986--34770108	22	5.3	22	64	24	65	34	12	30	23	1.91
34769868--34770205	140	2.4	141	92	0	543	34	10	29	25	1.90
34770037--34770106	24	3.0	24	67	29	60	31	14	32	21	1.93
34770219--34770355	46	3.0	46	92	0	229	34	7	31	27	1.84
34769868--34770291	234	1.8	232	84	5	575	33	10	30	25	1.89
34778116--34778141	11	2.4	11	100	0	52	46	19	7	26	1.77
34783930--34783988	29	2.0	28	83	6	73	72	0	20	6	1.06
34804678--34804768	46	2.0	46	86	0	128	27	31	6	34	1.83
34804785--34804860	22	3.3	22	66	28	59	25	27	11	35	1.91
34804782--34804980	47	4.2	47	94	0	344	25	28	11	35	1.91
34804748--34804980	94	2.5	94	90	1	351	24	29	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34804830--34804954	22	5.4	22	64	26	71	24	29	12	33	1.92
34808071--34808275	27	7.6	27	87	3	259	26	14	27	31	1.95
34808071--34808275	109	1.9	109	85	2	286	26	14	27	31	1.95
34811153--34811217	31	2.1	31	91	0	103	16	33	10	38	1.84
34813698--34813760	32	2.0	32	100	0	126	55	3	12	28	1.52
34815141--34815223	32	2.6	32	77	7	96	21	34	21	21	1.96
34820052--34820190	41	3.3	43	81	11	139	29	16	23	30	1.96
34820054--34820201	42	3.5	40	78	9	127	29	14	24	31	1.95
34824488--34824644	77	2.0	77	98	0	305	26	19	15	38	1.92
34824996--34825067	33	2.1	34	84	2	92	26	25	23	25	2.00
34826828--34826874	20	2.3	21	88	3	69	27	17	36	19	1.93
34828704--34828760	26	2.2	26	81	6	62	24	19	22	33	1.97
34830140--34830218	31	2.5	31	93	0	131	27	25	20	26	1.99
34830246--34830333	42	2.1	42	93	0	149	40	19	12	27	1.87
34830478--34830652	26	6.8	26	90	0	255	27	22	22	27	1.99
34830478--34830652	78	2.3	77	92	2	289	27	22	22	27	1.99
34830702--34830777	20	3.9	20	90	8	113	34	19	9	36	1.84
34830702--34830757	11	5.5	11	71	16	57	32	19	10	37	1.86
34830804--34830851	25	1.9	25	86	0	69	27	14	22	35	1.93
34831438--34831503	27	2.4	28	80	7	73	21	24	19	34	1.96
34831535--34832012	27	17.7	27	77	6	355	30	8	20	41	1.81
34831621--34832012	80	4.9	79	87	4	439	29	8	20	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34831647--34832012	107	3.4	108	81	3	445	29	8	21	41	1.82
34831647--34832012	27	13.7	27	80	6	363	29	8	21	41	1.82
34831621--34832173	27	20.6	27	80	4	336	31	8	20	39	1.83
34831647--34832026	134	2.8	132	83	5	478	29	8	21	40	1.83
34836888--34836919	15	2.1	15	94	0	55	15	25	15	43	1.86
34840308--34840357	26	1.9	26	83	0	64	12	12	4	72	1.26
34841936--34841960	2	12.5	2	100	0	50	0	0	48	52	1.00
34842622--34842729	40	2.7	39	85	5	135	27	23	21	27	1.99
34850503--34850660	40	4.0	40	89	1	237	24	20	25	29	1.99
34850504--34850701	80	2.5	79	84	4	211	24	21	24	29	1.99
34852212--34852268	21	2.8	21	83	2	71	15	35	24	24	1.95
34853188--34853219	13	2.4	14	85	15	50	43	6	6	43	1.54
34855387--34855424	19	2.0	19	85	10	51	28	2	23	44	1.67
34859148--34859287	23	5.9	23	76	9	113	23	25	20	31	1.98
34859148--34859260	46	2.4	48	82	7	133	23	24	17	33	1.96
34859439--34859574	71	1.9	71	96	0	254	29	6	21	42	1.78
34861618--34861877	40	6.6	40	90	1	366	23	27	22	26	2.00
34870982--34871148	39	4.2	41	80	7	132	26	27	20	25	1.99
34871019--34871148	40	3.3	39	83	5	172	26	27	20	24	1.99
34870982--34871148	79	2.1	79	82	6	196	26	27	20	25	1.99
34889153--34889274	43	2.8	43	85	7	142	26	17	24	31	1.97
34892653--34892720	27	2.5	28	76	7	77	33	22	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34893429--34893601	27	6.4	27	88	0	238	24	20	19	35	1.95
34901773--34901878	27	3.9	26	82	7	122	15	23	23	37	1.93
34901773--34901882	54	2.0	54	84	6	143	14	23	22	39	1.91
34902942--34902975	10	3.3	10	84	8	50	29	8	8	52	1.62
34908148--34908218	24	3.0	24	95	0	124	35	1	38	25	1.65
34908148--34908241	48	1.9	48	81	10	111	35	4	37	23	1.75
34909647--34909758	27	4.2	26	83	7	116	13	22	24	40	1.89
34910975--34911034	27	2.3	26	85	2	75	35	20	23	21	1.96
34910996--34911059	33	2.0	32	84	3	83	35	20	23	20	1.96
34911002--34911145	67	2.1	67	83	7	171	31	21	26	20	1.98
34911778--34911896	27	4.4	27	86	0	148	26	20	18	34	1.96
34914549--34914637	46	2.0	45	88	4	135	29	31	19	20	1.97
34917750--34917877	28	4.5	28	88	2	175	28	12	25	32	1.92
34917750--34917877	57	2.2	57	88	2	186	28	12	25	32	1.92
34920238--34920317	15	5.4	15	76	7	74	60	10	16	13	1.59
34920238--34920326	15	6.0	15	74	8	67	58	12	15	13	1.64
34922150--34922217	27	2.5	27	92	2	91	33	27	11	26	1.91
34922152--34922247	28	3.4	28	86	2	122	32	27	13	27	1.94
34922694--34922720	12	2.2	12	100	0	54	40	0	7	51	1.30
34930063--34930131	27	2.5	26	92	2	84	33	26	13	27	1.93
34930062--34930159	28	3.5	28	87	2	126	32	27	13	26	1.93
34941129--34941246	27	4.4	27	79	2	121	23	16	18	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34941571--34941605	18	1.9	18	94	0	61	20	20	14	45	1.85
34949313--34949534	40	5.6	40	91	1	340	24	26	22	26	2.00
34960972--34961170	44	4.6	44	79	8	203	24	16	25	33	1.96
34964060--34964245	56	3.3	56	88	0	255	34	22	14	28	1.93
34971064--34971318	55	4.8	54	75	12	210	36	17	24	21	1.95
34971489--34971528	20	2.0	20	95	0	71	42	0	12	45	1.42
34971528--34971558	16	1.9	16	93	0	53	41	0	22	35	1.54
34974622--34974855	49	4.7	49	79	6	265	29	26	18	25	1.98
34974622--34974860	100	2.4	100	85	4	315	29	26	18	25	1.98
34975010--34975040	10	3.1	10	95	0	53	70	6	0	22	1.09
34977970--34978080	43	2.6	42	78	7	134	25	18	24	31	1.98
34980139--34980201	32	2.0	32	90	0	99	34	14	23	26	1.93
34984445--34984480	19	1.9	18	88	5	54	41	0	13	44	1.44
34989529--34989706	27	6.6	27	84	3	205	29	28	15	26	1.96
34989550--34989705	82	1.9	81	88	3	233	29	28	15	26	1.96
35005580--35005696	27	4.3	27	82	0	144	25	23	10	41	1.86
35005728--35005853	27	4.7	27	86	3	173	39	22	8	29	1.84
35005700--35005850	54	2.8	54	81	4	153	40	20	10	28	1.86
35005728--35005879	54	2.8	55	76	5	159	40	21	8	28	1.83
35005728--35005877	81	1.9	81	84	8	207	41	21	8	28	1.82
35005890--35005941	27	1.9	27	88	7	79	40	13	11	34	1.81
35006866--35006963	25	4.0	23	79	10	88	27	23	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35007084--35007177	42	2.2	42	94	0	161	29	15	21	32	1.95
35007199--35007313	31	3.7	31	91	1	187	29	16	25	28	1.97
35015476--35015592	40	2.9	39	84	6	137	29	24	17	29	1.97
35020149--35020240	23	4.0	23	78	16	86	31	23	20	23	1.98
35032270--35032314	23	2.0	23	82	8	56	48	31	0	20	1.49
35037922--35038144	40	5.6	40	83	6	213	24	20	27	27	1.99
35037922--35038146	80	2.8	79	82	7	242	24	20	28	27	1.99
35037997--35038179	79	2.3	80	81	1	217	25	20	27	26	1.99
35037922--35038179	119	2.2	120	80	4	281	25	20	27	26	1.99
35057977--35058028	26	2.0	26	96	0	95	19	25	30	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344