genome.fa.s10.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  120  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40645964--40646210	40	6.2	40	88	1	309	29	28	19	23	1.98
40653225--40653372	79	1.9	80	90	4	237	25	22	27	25	2.00
40653225--40653372	40	3.7	40	89	5	237	25	22	27	25	2.00
40653232--40653405	79	2.2	79	84	6	219	25	21	27	24	1.99
40653225--40653405	40	4.6	39	83	8	206	26	22	27	24	2.00
40655666--40655708	22	1.9	23	81	13	54	41	9	34	13	1.77
40661242--40661389	79	1.9	80	88	4	228	25	22	27	25	2.00
40661242--40661389	40	3.7	40	88	5	228	25	22	27	25	2.00
40661242--40661412	79	2.2	79	85	6	222	26	22	26	25	2.00
40661242--40661414	40	4.4	40	82	6	147	26	21	26	25	2.00
40669084--40669137	27	1.9	29	85	7	76	42	31	3	22	1.71
40684491--40684743	68	3.8	65	75	11	214	30	16	28	24	1.97
40687248--40687420	46	3.7	46	76	13	192	21	21	26	30	1.99
40687245--40687415	93	1.8	93	92	0	288	21	22	26	29	1.99
40690390--40690445	15	3.7	15	88	7	87	12	16	10	60	1.58
40692849--40693019	46	3.7	45	75	15	170	22	19	28	29	1.98
40692842--40693012	93	1.8	93	89	2	272	22	21	27	28	1.99
40700868--40700932	32	2.0	32	93	0	112	52	10	13	23	1.72
40702471--40702524	28	1.9	28	100	0	108	42	5	22	29	1.76
40702807--40702839	16	2.2	15	89	10	50	48	6	15	30	1.69
40705596--40705651	16	3.4	16	74	16	51	35	0	5	58	1.21
40707655--40707771	56	2.1	56	100	0	234	20	31	3	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40709640--40709807	27	6.3	27	76	8	119	39	19	9	31	1.83
40709634--40709806	54	3.2	55	79	7	194	39	19	9	31	1.83
40709665--40709898	27	8.7	26	78	10	123	37	20	8	32	1.83
40709773--40709898	54	2.3	54	80	2	155	36	21	7	34	1.81
40709883--40710264	27	14.2	27	84	3	450	35	19	18	26	1.95
40710459--40710538	27	3.0	26	88	3	97	20	22	21	36	1.95
40710852--40710925	27	2.8	27	85	6	89	17	24	21	36	1.95
40711071--40711225	19	7.9	19	70	19	97	19	18	14	47	1.82
40711043--40711220	6	28.8	6	68	17	89	19	19	13	47	1.82
40711043--40711122	25	3.2	25	84	5	92	20	18	13	47	1.82
40711065--40711147	37	2.2	37	86	0	121	19	19	15	45	1.85
40711044--40711209	62	2.7	62	89	0	233	19	18	13	48	1.81
40711106--40711166	25	2.4	25	83	0	86	22	19	9	47	1.79
40715544--40715816	40	6.8	40	91	1	420	24	30	21	23	1.99
40715557--40715816	122	2.2	120	90	1	403	24	30	22	23	1.99
40724181--40724532	40	8.8	40	93	1	562	24	29	22	23	1.99
40729734--40729911	27	6.6	27	84	3	205	29	28	15	26	1.96
40729755--40729910	82	1.9	81	88	3	233	29	28	15	26	1.96
40744759--40744881	56	2.2	56	81	4	151	30	12	22	34	1.91
40744848--40744966	56	2.1	57	81	7	145	22	14	29	33	1.93
40745724--40745772	23	2.1	24	84	3	64	14	0	32	53	1.41
40774388--40774560	46	3.7	46	73	13	165	23	18	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40782361--40782399	19	2.1	19	100	0	78	41	15	10	33	1.81
40784631--40784762	54	2.4	54	97	0	255	26	18	25	30	1.98
40798554--40798731	27	6.6	27	82	3	196	26	14	28	30	1.95
40798551--40798731	82	2.2	81	82	2	220	27	14	27	30	1.95
40806819--40806861	8	5.4	8	80	0	50	46	18	20	13	1.83
40806811--40806861	24	2.1	24	85	7	68	49	17	21	11	1.79
40807070--40807144	29	2.6	28	79	4	87	29	16	25	29	1.96
40807070--40807156	28	3.1	28	81	3	102	28	16	25	29	1.96
40811260--40811385	31	4.1	31	92	1	218	30	24	15	29	1.95
40811260--40811512	62	4.4	62	79	16	317	28	24	15	30	1.96
40811369--40811438	25	3.0	24	86	11	94	27	24	11	37	1.89
40811311--40811461	76	1.9	78	90	8	243	29	24	12	33	1.92
40811414--40811521	31	3.5	31	93	1	180	26	24	17	31	1.97
40811536--40811627	42	2.2	42	96	0	166	33	20	14	31	1.92
40811775--40811844	25	2.8	25	84	4	88	25	22	27	24	2.00
40812774--40812825	27	1.9	27	85	14	72	34	13	11	40	1.81
40812837--40812959	27	4.6	26	82	5	147	26	6	22	43	1.77
40812838--40812988	80	1.9	81	83	4	198	27	9	20	43	1.82
40812993--40813082	27	3.3	27	81	9	112	40	10	21	28	1.85
40817328--40817372	22	2.0	22	95	0	81	31	15	22	31	1.95
40818079--40818122	16	2.8	16	82	3	54	47	27	18	6	1.73
40818096--40818133	16	2.4	16	91	8	60	50	21	15	13	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40818360--40818471	29	3.9	29	83	2	129	25	16	30	27	1.96
40818899--40818928	15	2.1	15	93	6	53	30	6	26	36	1.82
40818928--40818983	22	2.5	22	100	0	112	30	26	5	37	1.79
40821171--40821300	43	3.0	42	73	5	118	29	14	23	33	1.94
40830685--40830862	27	6.6	27	84	3	187	29	28	14	27	1.95
40830706--40830861	82	1.9	81	89	3	242	30	28	14	26	1.95
40836970--40837073	33	3.3	33	71	16	85	25	25	23	25	2.00
40837366--40838140	392	2.0	392	96	1	1419	35	13	19	31	1.91
40841283--40841549	40	6.7	40	95	0	480	22	27	20	29	1.98
40849945--40850238	40	7.7	40	91	7	481	21	26	20	30	1.98
40864792--40864823	16	2.0	16	100	0	64	25	6	31	37	1.81
40866704--40866826	46	2.7	46	94	0	210	21	20	28	30	1.98
40867770--40867994	40	5.6	40	83	2	263	25	24	26	23	2.00
40867770--40868030	80	3.3	80	81	3	285	26	24	26	23	2.00
40867770--40867994	120	1.9	121	83	4	294	25	24	26	23	2.00
40876657--40876828	46	3.7	46	77	13	190	28	27	21	22	1.99
40876662--40876832	93	1.8	93	92	0	288	28	28	21	21	1.99
40877252--40877311	30	2.0	30	90	0	93	30	25	8	36	1.85
40889251--40889428	27	6.6	27	81	3	187	27	15	27	29	1.96
40889248--40889428	82	2.2	81	81	2	211	27	16	27	29	1.97
40893249--40893472	40	5.7	40	85	5	260	25	28	22	24	2.00
40893249--40893472	79	2.8	78	81	8	254	25	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40893249--40893472	39	5.7	40	84	6	253	25	28	22	24	2.00
40901224--40901428	38	5.5	37	80	12	181	23	27	22	25	2.00
40901219--40901428	75	2.8	74	82	10	230	24	28	22	24	2.00
40918203--40918357	82	1.9	80	85	7	215	26	15	29	29	1.96
40918202--40918378	27	6.6	27	82	7	189	26	15	28	29	1.96
40918202--40918378	82	2.2	80	81	6	205	26	15	28	29	1.96
40922972--40923007	14	2.7	14	91	8	58	8	8	8	75	1.21
40927927--40927989	33	1.9	33	84	12	85	12	25	6	55	1.60
40927987--40928042	21	2.7	21	72	5	51	8	17	1	71	1.21
40927986--40928042	14	4.1	14	75	16	57	8	17	1	71	1.19
40928004--40928142	18	7.7	18	71	11	88	7	20	2	69	1.27
40928004--40928111	6	17.7	6	70	5	74	6	18	3	71	1.23
40932581--40932616	18	2.0	18	100	0	72	16	22	16	44	1.86
40933321--40933351	13	2.4	13	100	0	62	16	41	29	12	1.85
40937229--40937263	11	3.1	11	87	4	52	20	0	20	60	1.37
40966844--40967021	27	6.6	27	83	3	205	26	15	28	29	1.96
40966845--40967000	82	1.9	81	88	3	233	26	15	28	29	1.96
40966841--40967021	82	2.2	81	83	2	229	27	15	27	29	1.96
40970467--40970572	42	2.5	42	98	1	203	33	12	14	40	1.83
40970555--40970599	14	3.3	14	84	6	65	37	0	13	48	1.42
40971572--40971631	29	2.1	29	90	6	95	43	28	0	28	1.55
40972953--40973005	18	2.9	18	80	0	70	52	0	30	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40972895--40973198	146	2.1	147	98	0	592	58	2	25	13	1.47
40973099--40973151	18	2.9	18	80	0	70	52	0	30	16	1.44
40975972--40976031	22	2.7	23	73	19	63	66	6	0	26	1.16
40975981--40976014	4	8.0	4	90	9	50	73	2	0	23	0.97
40976568--40976673	42	2.5	42	93	1	185	33	11	13	41	1.80
40976656--40976700	14	3.3	14	84	6	65	37	0	13	48	1.42
40979260--40979319	29	2.1	29	93	0	102	41	30	0	28	1.56
40979266--40979313	15	3.3	15	73	5	53	43	27	0	29	1.55
40979992--40980039	14	3.4	14	82	0	51	45	6	29	18	1.74
40988128--40988342	40	5.4	40	92	1	360	29	27	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344