genome.fa.s10.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  134  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45190862--45190940	39	2.0	39	100	0	158	22	17	21	37	1.94
45192125--45192309	40	4.6	41	80	7	204	24	26	22	25	2.00
45192125--45192309	79	2.3	82	81	9	213	24	26	22	25	2.00
45201333--45201516	40	4.6	40	82	6	205	23	27	23	25	2.00
45206918--45206969	21	2.5	21	100	0	104	34	7	23	34	1.83
45207628--45208112	47	10.4	47	91	0	724	31	10	31	25	1.90
45208243--45208322	37	2.2	37	86	4	108	23	17	31	27	1.97
45212106--45212257	29	5.4	28	76	9	123	28	30	14	26	1.95
45219857--45219916	28	2.1	28	85	11	79	28	28	13	30	1.94
45220131--45220169	16	2.4	16	86	0	51	7	17	23	51	1.71
45228046--45228098	27	2.0	27	88	0	79	22	30	11	35	1.89
45243091--45243128	14	2.7	14	88	8	51	86	0	13	0	0.56
45243091--45243128	13	3.0	12	92	7	58	86	0	13	0	0.56
45249934--45249958	6	4.2	6	100	0	50	68	0	32	0	0.90
45254336--45254443	28	3.9	28	78	8	112	26	31	15	25	1.96
45257300--45257578	141	2.0	141	97	0	522	26	11	23	37	1.89
45257645--45257711	30	2.2	30	97	0	125	28	11	16	43	1.83
45257659--45257715	18	3.5	18	64	26	54	31	15	14	38	1.87
45259143--45259242	27	3.7	27	88	5	123	28	11	23	38	1.88
45270659--45270864	27	7.6	27	75	8	161	40	23	8	27	1.83
45270659--45270864	81	2.5	81	76	7	195	40	23	8	27	1.83
45270857--45270963	27	4.0	27	83	0	133	33	19	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45271311--45271369	22	2.7	22	81	5	66	20	27	22	30	1.98
45271526--45271590	27	2.4	27	82	5	78	16	21	24	36	1.94
45271733--45271852	6	19.3	6	71	19	86	20	16	14	49	1.80
45271733--45271843	31	3.5	31	92	1	159	19	17	13	49	1.79
45289493--45289755	40	6.6	40	87	3	307	26	28	20	24	1.99
45289687--45289764	40	1.9	41	82	10	97	26	28	21	23	1.99
45295467--45295520	27	2.0	27	89	3	83	25	38	16	18	1.92
45295724--45295976	43	5.9	42	90	2	335	33	32	21	12	1.91
45295724--45295976	129	2.0	129	89	1	391	33	32	21	12	1.91
45316061--45316089	4	7.2	4	100	0	58	24	0	0	75	0.80
45316770--45316820	8	6.4	8	83	0	57	47	19	19	13	1.83
45316785--45316828	16	2.8	16	82	0	52	47	18	22	11	1.80
45317045--45317126	29	2.9	28	74	5	83	30	15	29	24	1.96
45318449--45318519	37	1.9	37	91	0	115	28	25	16	29	1.97
45323097--45323339	48	5.1	48	81	3	283	34	28	16	20	1.94
45324535--45324793	27	9.6	27	84	3	272	40	18	10	30	1.84
45324535--45324793	81	3.2	78	82	8	313	40	18	10	30	1.84
45324781--45325211	27	16.0	27	79	5	390	38	18	17	25	1.92
45324778--45325214	54	8.1	54	86	1	500	39	18	16	25	1.92
45324752--45325187	81	5.4	81	81	4	450	39	18	15	25	1.91
45325329--45325375	21	2.3	20	88	3	67	36	8	25	29	1.86
45325425--45325494	25	2.8	25	91	0	113	27	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45325425--45325507	25	3.4	24	83	8	96	28	21	21	27	1.99
45327225--45327249	13	1.9	13	100	0	50	32	20	16	32	1.94
45327797--45327975	27	6.6	27	82	7	184	27	15	27	29	1.96
45327799--45327954	82	1.9	81	86	3	224	27	15	28	28	1.96
45327795--45327975	82	2.2	81	81	2	220	27	14	27	29	1.96
45348410--45348469	27	2.3	26	85	2	75	35	20	23	21	1.96
45348512--45348563	27	2.0	26	84	3	68	32	19	28	19	1.96
45349217--45349389	54	3.2	54	81	3	213	24	19	19	37	1.94
45349217--45349389	27	6.4	26	84	5	175	24	19	19	37	1.94
45349235--45349388	81	1.9	81	83	2	202	23	17	20	38	1.93
45350817--45351035	27	8.3	27	79	8	245	38	20	11	30	1.87
45350817--45351023	53	3.9	53	86	5	267	38	20	11	29	1.88
45350817--45351061	53	4.6	52	83	7	228	38	20	11	30	1.87
45350869--45351061	106	1.8	106	85	6	275	38	19	10	30	1.86
45350817--45351099	27	10.6	27	75	11	217	37	20	10	31	1.87
45351092--45351441	27	12.9	27	85	3	445	35	18	20	26	1.95
45352031--45352136	27	4.0	26	81	6	104	18	23	19	37	1.94
45352031--45352136	54	2.0	53	84	1	140	18	23	19	37	1.94
45352255--45352321	6	10.8	6	78	12	73	17	19	14	47	1.82
45352258--45352321	25	2.6	25	92	0	101	17	20	15	46	1.83
45353066--45353104	21	1.9	20	89	5	60	46	20	0	33	1.51
45356672--45356714	21	2.0	21	86	8	61	16	25	2	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45360947--45361012	27	2.4	27	80	5	80	30	21	24	24	1.99
45369590--45369732	77	1.9	77	83	0	187	35	25	18	20	1.95
45370292--45370382	45	2.0	45	100	0	182	45	17	6	30	1.74
45386575--45386748	87	2.0	87	96	0	321	31	22	13	32	1.92
45386725--45386882	41	3.8	40	85	6	199	36	25	18	20	1.95
45386704--45386883	84	2.2	83	85	6	231	36	24	18	21	1.95
45389299--45389338	19	2.0	20	90	4	64	20	7	0	72	1.08
45396882--45396919	19	2.0	20	89	5	60	21	7	0	71	1.11
45402919--45403094	41	4.2	41	85	5	212	36	25	19	18	1.94
45404750--45404859	26	4.1	27	82	11	129	36	21	24	17	1.94
45404751--45404855	54	2.0	52	85	7	140	37	20	24	18	1.94
45404961--45405041	28	3.0	27	83	5	101	33	13	19	33	1.91
45411623--45411653	16	2.0	15	93	6	53	25	3	12	58	1.50
45412622--45412734	27	4.2	26	78	10	111	38	19	22	20	1.94
45412622--45412734	54	2.1	54	83	3	138	38	19	22	20	1.94
45421564--45421729	6	26.8	6	71	17	108	49	13	18	18	1.80
45421569--45421639	19	3.8	18	78	10	72	49	15	19	15	1.80
45421564--45421729	31	5.4	31	70	16	137	49	13	18	18	1.80
45421564--45421678	37	3.1	37	76	5	99	51	15	17	15	1.77
45421563--45421728	62	2.7	62	92	0	269	49	13	18	18	1.80
45421588--45421666	25	3.2	25	80	5	81	51	15	16	16	1.76
45421847--45421912	27	2.5	26	80	7	69	40	22	19	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45422050--45422101	27	1.9	27	84	7	70	36	13	23	26	1.92
45422085--45422143	22	2.7	22	81	0	64	32	22	25	20	1.98
45422231--45422313	27	3.1	26	84	5	103	37	20	21	20	1.95
45422512--45422707	27	7.3	27	82	1	214	26	19	17	36	1.94
45422512--45422707	54	3.6	54	82	4	243	26	19	17	36	1.94
45422514--45422707	81	2.4	82	84	3	241	26	19	17	37	1.93
45422712--45422959	27	9.2	27	79	6	279	41	10	21	26	1.86
45422712--45422958	81	3.0	80	88	5	347	41	10	21	26	1.85
45422712--45422990	81	3.4	79	83	7	312	39	10	22	27	1.87
45424967--45425138	6	27.8	6	74	16	129	47	14	18	19	1.82
45424967--45425138	31	5.4	31	73	14	152	47	14	18	19	1.82
45424967--45425042	37	2.1	37	87	0	107	48	14	19	17	1.81
45424966--45425110	62	2.3	62	95	0	254	47	14	18	19	1.82
45425003--45425138	25	5.7	25	70	18	103	47	14	18	19	1.83
45425029--45425138	37	3.1	36	75	15	131	47	14	18	20	1.83
45424966--45425138	62	2.8	61	89	5	251	47	14	18	19	1.83
45425256--45425320	27	2.5	26	82	9	78	36	23	23	16	1.94
45425458--45425509	27	1.9	27	84	7	70	36	13	23	26	1.92
45425493--45425551	22	2.7	22	81	0	64	32	22	25	20	1.98
45425922--45426108	81	2.3	82	83	3	236	26	19	17	36	1.94
45425922--45426115	27	7.2	27	82	4	212	27	19	17	36	1.93
45426120--45426367	27	9.2	27	79	8	272	40	9	22	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45426120--45426366	81	3.0	80	86	5	329	40	9	21	27	1.85
45426120--45426398	81	3.4	80	83	8	307	39	9	23	28	1.85
45428379--45428494	6	18.8	6	76	15	112	48	16	18	17	1.82
45428374--45428485	37	3.0	37	82	5	145	47	16	17	17	1.83
45428384--45428494	31	3.6	31	76	13	120	47	17	18	17	1.83
45428427--45428494	25	2.7	25	88	0	100	47	17	17	17	1.84
45428612--45428677	27	2.5	26	82	7	78	39	22	21	16	1.92
45428612--45428685	27	2.8	27	74	13	73	37	21	22	17	1.94
45428636--45428693	27	2.1	27	81	6	64	37	27	18	15	1.92
45428996--45429078	27	3.1	26	87	5	112	37	21	21	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344