genome.fa.s10.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  133  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44904813--44905047	118	2.0	115	82	7	285	27	28	21	21	1.99
44906423--44906476	27	2.0	27	82	3	65	12	16	0	70	1.17
44914526--44914661	40	3.4	40	91	3	213	25	22	28	23	1.99
44918288--44918413	28	4.5	28	96	1	218	33	28	11	26	1.92
44926630--44926780	28	5.4	28	91	1	214	33	27	11	26	1.92
44929551--44929755	27	7.6	27	87	3	259	26	14	27	31	1.95
44929551--44929755	109	1.9	109	85	2	286	26	14	27	31	1.95
44938000--44938177	40	4.5	40	87	2	252	24	22	26	25	2.00
44948224--44948318	43	2.2	43	81	3	111	35	25	11	27	1.90
44960629--44960748	56	2.1	56	98	0	231	45	9	23	22	1.81
44961878--44962102	40	5.7	40	82	5	233	24	20	27	27	1.99
44961931--44962125	80	2.5	78	84	5	223	25	19	27	27	1.99
44967126--44967348	119	1.9	120	84	6	301	25	27	22	24	2.00
44967124--44967348	40	5.7	40	85	6	287	25	28	22	24	2.00
44989596--44989626	16	2.0	15	93	6	53	32	25	0	41	1.56
44989831--44990006	51	3.5	49	78	3	190	30	26	17	26	1.97
44989810--44989961	49	3.0	51	78	3	182	30	25	19	25	1.98
44989822--44990058	50	4.7	51	77	4	212	31	25	16	25	1.97
44993023--44993082	15	4.0	15	80	0	66	56	13	16	13	1.67
44993024--44993082	30	2.0	30	82	0	73	55	13	16	13	1.68
44996970--44997112	56	2.6	56	94	0	250	23	19	28	27	1.98
44997018--44997182	56	3.0	54	84	3	177	20	16	32	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45000434--45000679	50	5.0	50	77	3	246	30	26	17	26	1.97
45000434--45000676	100	2.5	99	84	1	299	29	26	17	26	1.97
45001451--45001542	33	2.8	33	80	1	96	28	16	25	30	1.96
45005676--45005740	33	2.0	33	90	6	105	35	7	15	41	1.76
45007251--45007335	26	3.4	24	75	10	73	24	20	16	38	1.92
45011870--45012101	39	6.0	39	93	0	385	24	28	25	21	1.99
45015718--45015769	27	2.0	26	84	3	68	17	26	21	34	1.95
45028642--45028711	25	2.8	24	86	4	86	25	24	24	25	2.00
45028642--45028724	25	3.4	24	82	11	80	28	21	24	25	1.99
45028859--45028950	42	2.2	42	98	0	175	31	15	20	32	1.94
45028974--45029086	31	3.7	30	89	3	165	28	16	25	29	1.97
45031092--45031264	93	1.9	93	91	0	283	27	30	21	20	1.98
45031093--45031260	46	3.6	46	77	10	180	28	29	22	20	1.98
45031136--45031279	46	3.1	45	73	11	130	29	29	20	20	1.98
45033070--45033144	28	2.7	28	85	0	105	33	12	25	29	1.92
45035402--45035449	25	1.9	25	100	0	96	58	0	8	33	1.28
45035656--45035716	27	2.3	27	85	5	79	32	19	37	9	1.85
45035842--45035983	40	3.5	41	84	4	173	19	23	18	39	1.92
45035891--45036017	41	3.1	41	87	2	132	17	25	16	40	1.90
45040578--45040621	22	2.0	22	86	0	61	43	0	4	52	1.22
45041423--45041458	18	1.9	19	88	5	56	36	0	8	55	1.30
45051554--45051612	27	2.2	26	84	3	73	35	20	23	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45056953--45057130	40	4.5	40	90	3	263	25	27	23	23	2.00
45062228--45062291	33	2.0	32	84	3	83	35	20	23	20	1.96
45065835--45065949	26	4.3	26	75	3	95	40	21	11	26	1.87
45065928--45066097	27	6.3	27	83	1	198	30	22	7	40	1.81
45065942--45066097	53	2.9	52	87	4	213	31	22	5	40	1.77
45065928--45066107	53	3.3	52	82	3	207	30	22	7	39	1.82
45066089--45066198	27	4.1	26	72	15	80	37	23	10	28	1.89
45066102--45066446	27	12.8	27	85	6	405	34	21	19	24	1.96
45067638--45067770	69	1.9	70	87	1	196	31	14	16	37	1.89
45069233--45069794	47	12.0	47	88	0	827	31	11	29	27	1.92
45069354--45069429	23	3.2	25	62	24	63	28	13	34	23	1.92
45069684--45069758	23	3.1	25	63	24	61	29	13	33	24	1.93
45069957--45070108	37	4.1	37	89	0	223	21	21	31	25	1.98
45071380--45071731	40	8.9	40	87	3	480	21	21	29	27	1.98
45071380--45071733	120	3.0	121	92	2	581	22	20	29	27	1.98
45074025--45074157	69	1.9	70	90	1	214	32	14	16	36	1.89
45075619--45076180	47	12.0	47	88	0	818	32	11	29	27	1.92
45076343--45076493	37	4.1	37	91	0	230	21	21	31	25	1.98
45077301--45077397	27	3.6	27	86	4	117	30	18	24	25	1.98
45077824--45077888	22	3.0	22	80	8	78	20	23	23	33	1.97
45078047--45078148	27	3.8	27	85	5	116	18	24	21	35	1.96
45078047--45078148	54	1.9	53	83	2	132	18	24	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45078296--45078352	19	3.4	19	64	31	56	19	17	15	47	1.83
45078285--45078395	6	17.8	6	70	17	75	19	18	13	48	1.80
45078285--45078395	31	3.5	31	91	1	159	19	18	13	48	1.80
45089381--45089556	46	3.8	46	80	4	210	21	19	30	28	1.98
45089377--45089548	93	1.8	93	92	0	290	20	20	30	27	1.98
45092844--45092955	27	4.1	27	80	7	120	15	22	23	39	1.91
45092844--45092955	54	2.1	54	84	3	145	15	22	23	39	1.91
45097999--45098052	27	2.0	27	88	0	81	40	7	14	37	1.74
45098306--45098480	49	3.5	49	80	6	235	24	17	26	31	1.97
45098301--45098486	100	1.9	100	96	0	345	24	17	26	31	1.97
45100258--45100352	42	2.2	43	88	1	138	31	26	17	24	1.97
45100278--45100399	46	2.8	42	83	10	131	31	26	19	22	1.98
45103172--45103349	27	6.6	27	84	3	205	29	28	15	26	1.96
45103193--45103348	82	1.9	81	88	3	233	29	28	15	26	1.96
45103829--45103854	12	2.2	12	100	0	52	42	0	7	50	1.31
45105795--45106012	40	5.5	40	88	2	298	25	27	23	23	2.00
45114004--45114165	40	4.4	38	82	15	207	25	26	23	24	2.00
45121980--45122075	34	2.8	34	76	6	86	25	18	26	30	1.98
45126845--45126980	69	2.0	69	98	0	263	31	22	18	27	1.97
45129738--45129881	40	3.7	40	84	2	175	22	26	25	25	2.00
45132244--45132277	1	34.0	1	100	0	68	100	0	0	0	0.00
45148994--45149102	29	3.8	30	74	6	75	26	32	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45149005--45149113	58	1.9	57	83	5	139	27	31	12	28	1.93
45149186--45149232	19	2.5	19	86	3	60	19	36	17	27	1.93
45152134--45152169	18	2.0	18	88	0	54	22	22	8	47	1.77
45155951--45156157	71	2.9	72	76	4	211	34	5	11	48	1.64
45155951--45156172	72	3.1	72	76	3	232	33	6	11	47	1.66
45157062--45157095	13	2.4	14	85	14	52	50	0	14	35	1.44
45157069--45157095	13	2.1	13	100	0	54	51	0	11	37	1.37
45157146--45157275	9	14.7	9	76	7	97	49	16	0	33	1.51
45157147--45157275	54	2.4	52	89	2	195	48	16	0	34	1.51
45162233--45162432	81	2.5	81	89	0	283	29	25	7	38	1.82
45162233--45162432	27	7.4	27	85	2	240	29	25	7	38	1.82
45162431--45162613	27	6.8	27	80	8	196	40	19	8	31	1.82
45162422--45162586	53	3.1	53	86	3	206	39	20	9	30	1.84
45162579--45162676	27	3.6	27	80	13	110	39	17	9	33	1.81
45164354--45164615	68	4.0	64	77	11	230	30	16	28	24	1.97
45167365--45167499	42	3.2	42	98	0	261	31	14	20	34	1.93
45167521--45167635	31	3.7	31	90	1	178	27	15	26	29	1.96
45170329--45170393	24	2.7	24	76	9	60	35	3	33	27	1.73
45170341--45170410	36	1.9	37	83	13	92	40	2	32	24	1.70
45176514--45176654	60	2.4	59	83	9	171	27	26	19	25	1.99
45179699--45179767	27	2.6	26	86	2	93	42	23	5	28	1.77
45179701--45179767	26	2.5	27	85	2	91	43	23	5	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45179750--45179811	27	2.3	27	85	0	79	40	16	16	27	1.89
45181706--45181778	27	2.8	26	83	4	92	39	24	4	31	1.74
45181760--45181819	27	2.2	27	85	11	79	41	20	11	26	1.86
45182260--45182321	27	2.3	27	82	0	70	22	16	16	45	1.85
45185535--45185607	27	2.7	27	72	16	69	41	21	9	27	1.84
45185585--45185638	27	2.0	27	92	0	90	35	22	14	27	1.93
45185588--45185646	27	2.2	27	87	0	82	38	22	15	23	1.92
45186961--45187184	46	4.8	46	83	5	290	29	25	21	23	1.99
45186969--45187138	93	1.8	93	92	0	286	28	25	21	23	1.99
45190320--45190378	27	2.2	27	93	0	100	38	20	16	23	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344