genome.fa.s10.2.7.7.80.10.50.1000.328.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  328  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106979402--106979506	10	10.8	10	74	19	82	72	1	0	25	0.95
106979395--106979499	28	3.6	30	81	15	130	72	1	0	24	1.01
106979410--106979506	33	2.9	34	83	8	130	73	2	0	24	0.94
106979406--106979526	8	16.0	7	73	19	68	73	1	1	23	1.01
106983076--106983135	29	2.1	29	100	0	120	35	25	6	33	1.82
106983159--106983218	20	3.0	19	79	16	68	66	3	8	21	1.33
106983664--106983710	21	2.1	23	84	11	62	44	2	4	48	1.34
106983786--106983815	13	2.2	14	94	5	53	63	0	0	36	0.95
106987232--106987753	132	4.0	131	78	4	469	28	19	17	34	1.95
106987422--106987741	133	2.4	134	80	2	351	26	20	17	35	1.94
106989293--106989340	19	2.5	19	100	0	96	20	20	14	43	1.87
106989277--106989330	24	2.2	24	83	6	65	20	24	14	40	1.90
106991893--106991937	4	12.2	4	86	13	62	77	0	22	0	0.76
106992928--106994042	88	12.7	88	81	3	1035	29	15	29	25	1.96
106992928--106994047	132	8.5	132	82	3	1074	29	15	29	25	1.96
106992928--106994067	44	25.9	44	80	5	859	29	15	29	25	1.96
106997092--106997601	132	3.9	131	81	3	504	28	19	17	34	1.95
107002706--107002762	29	2.0	29	92	0	96	57	3	12	26	1.50
107004909--107004953	22	2.1	21	87	4	63	40	0	2	57	1.11
107004877--107004953	29	2.7	26	72	20	66	37	0	3	58	1.17
107006052--107006092	21	2.0	21	95	0	73	31	4	4	58	1.40
107007807--107007847	19	2.2	19	100	0	82	21	9	43	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107008815--107008847	14	2.3	15	89	5	50	30	0	0	69	0.88
107016179--107016240	28	2.2	28	97	0	115	27	16	16	40	1.89
107018718--107018767	25	2.0	25	96	0	91	26	4	22	48	1.68
107019801--107019844	19	2.4	18	77	7	52	54	4	0	40	1.21
107020754--107020785	15	2.1	15	100	0	64	59	12	6	21	1.55
107020802--107020864	30	2.1	30	96	0	117	60	15	0	23	1.35
107022857--107022891	4	8.8	4	100	0	70	77	0	0	22	0.78
107029216--107029260	22	2.0	22	95	0	81	35	6	13	44	1.70
107031069--107031099	16	1.9	16	93	0	53	48	9	6	35	1.62
107031192--107031305	10	10.8	10	68	14	59	34	1	3	60	1.24
107033946--107033983	11	3.3	12	82	14	53	36	0	0	63	0.95
107034100--107034157	30	1.9	30	89	0	89	56	12	6	24	1.59
107040424--107040459	11	3.2	11	88	4	54	50	0	50	0	1.00
107040566--107040604	17	2.3	17	86	0	51	12	0	7	79	0.93
107041353--107042159	132	6.1	132	94	0	1301	29	25	16	28	1.97
107042272--107042752	95	5.0	95	95	1	838	28	22	19	29	1.98
107042789--107043006	41	5.1	41	61	20	97	25	24	22	27	2.00
107042743--107043092	86	4.1	86	93	0	547	26	24	22	26	2.00
107042818--107043038	42	5.2	42	61	20	107	24	23	24	26	2.00
107047208--107047251	19	2.3	20	84	7	56	40	11	20	27	1.86
107050206--107050241	11	3.2	11	88	4	54	50	0	50	0	1.00
107050348--107050386	17	2.3	17	86	0	51	12	0	7	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107053059--107053162	33	3.2	33	92	0	163	18	30	11	39	1.86
107054966--107055019	26	2.1	26	92	0	90	33	9	16	40	1.80
107057168--107057238	35	2.0	35	97	0	133	26	35	25	12	1.92
107063392--107063558	37	4.5	37	96	0	298	25	20	16	37	1.93
107063532--107063735	52	3.9	52	96	0	345	27	22	14	35	1.93
107066876--107067079	49	4.0	50	82	10	232	32	29	13	24	1.94
107066960--107067078	58	2.0	59	96	1	222	31	30	13	24	1.93
107068336--107068502	37	4.5	37	96	0	298	25	20	16	37	1.93
107068476--107068679	52	3.9	52	96	0	345	27	22	14	35	1.93
107071415--107071454	19	2.0	20	85	4	55	42	10	2	45	1.51
107079129--107079178	20	2.5	20	87	3	75	58	4	0	38	1.17
107085096--107085298	52	4.0	51	74	10	175	24	17	28	30	1.97
107086455--107086526	26	2.7	27	75	14	71	65	0	6	27	1.18
107087815--107087840	13	2.0	13	100	0	52	7	0	30	61	1.24
107106061--107106125	33	2.0	32	84	3	85	58	27	3	10	1.47
107112068--107112103	18	1.9	18	88	5	54	47	5	25	22	1.73
107121011--107121039	13	2.2	13	100	0	58	34	6	0	58	1.25
107123291--107123330	19	2.1	19	100	0	80	27	15	7	50	1.70
107129451--107129583	48	2.8	48	88	1	178	16	17	31	34	1.92
107130288--107132064	885	2.0	885	100	0	3554	23	16	28	31	1.96
107135227--107135413	50	3.7	50	83	7	223	29	28	16	25	1.97
107140332--107140447	40	2.9	41	89	3	164	36	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107141445--107141477	14	2.4	14	94	0	57	33	3	0	63	1.10
107147850--107147897	21	2.2	22	82	14	64	47	0	16	35	1.47
107148599--107148726	65	2.0	66	84	4	170	32	12	22	32	1.91
107148585--107148775	98	1.9	98	86	2	267	33	11	23	31	1.90
107148588--107148833	33	7.5	32	77	8	158	34	11	23	30	1.91
107148584--107148833	98	2.6	98	80	5	238	34	11	22	30	1.90
107148774--107148855	33	2.5	33	80	7	87	36	12	23	28	1.90
107151326--107151403	6	13.0	6	84	0	66	2	44	1	51	1.23
107151335--107151399	9	7.2	9	72	6	51	3	41	1	53	1.25
107151329--107151399	21	3.4	21	84	0	88	2	43	1	52	1.24
107151326--107151402	15	5.3	15	73	9	61	2	45	1	50	1.23
107151332--107151402	27	2.6	27	86	4	99	2	43	1	52	1.24
107151481--107151572	6	15.3	6	82	0	94	3	43	3	50	1.34
107151573--107151621	3	16.3	3	100	0	98	32	0	0	67	0.91
107152530--107152567	16	2.4	16	86	8	51	47	5	0	47	1.24
107153682--107153754	31	2.4	30	77	4	83	34	13	12	39	1.82
107153896--107153954	29	2.0	30	86	3	84	49	15	6	28	1.70
107153906--107153975	29	2.3	29	83	9	79	44	15	7	32	1.74
107158264--107158357	48	1.9	49	85	8	129	36	24	12	26	1.91
107159938--107159993	28	2.0	28	96	0	103	41	14	16	28	1.87
107164075--107164103	3	9.7	3	100	0	58	68	0	0	31	0.89
107164623--107164651	3	9.7	3	100	0	58	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107165699--107165741	18	2.4	18	84	0	50	46	20	2	30	1.63
107166505--107166556	3	17.0	3	76	11	52	34	3	1	59	1.27
107166505--107166544	16	2.6	15	88	4	53	32	5	2	60	1.32
107166683--107166738	23	2.3	26	85	14	75	35	10	0	53	1.36
107168133--107168199	31	2.2	31	97	2	127	35	17	17	28	1.93
107171238--107171314	25	3.0	25	90	1	127	75	18	2	3	1.07
107171287--107171334	18	2.6	17	90	9	69	66	27	2	4	1.21
107171292--107171334	18	2.4	18	96	3	79	65	30	0	4	1.13
107172115--107172143	3	9.7	3	100	0	58	34	0	0	65	0.93
107173749--107173918	25	7.0	24	84	7	209	27	22	20	29	1.98
107173976--107174032	9	5.9	9	73	15	51	35	21	8	35	1.84
107173964--107174034	20	3.5	20	94	0	124	32	21	11	35	1.89
107173969--107174023	11	5.4	11	70	16	55	30	20	12	36	1.90
107174071--107174118	25	1.9	25	86	0	69	25	16	25	33	1.96
107175278--107175355	27	2.9	27	77	11	79	21	20	20	37	1.95
107175396--107175583	27	6.9	27	73	6	119	33	10	17	39	1.83
107175577--107175786	27	7.8	27	87	2	253	38	7	25	29	1.82
107175795--107175881	27	3.2	27	83	3	95	33	11	14	40	1.83
107175811--107175890	27	2.9	27	81	5	81	35	11	13	40	1.81
107177930--107177965	12	3.0	12	95	0	63	27	25	5	41	1.77
107183447--107183480	14	2.4	15	90	9	54	70	2	0	26	1.01
107183476--107183577	30	3.4	31	83	5	122	29	22	3	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107183951--107183977	14	1.9	14	100	0	54	70	0	29	0	0.88
107183952--107183990	17	2.3	17	86	8	53	76	0	23	0	0.78
107184278--107184334	11	5.3	11	78	4	62	80	0	19	0	0.71
107184280--107184334	19	3.0	18	80	12	67	81	0	18	0	0.68
107184474--107184511	16	2.3	17	86	4	51	23	0	2	73	0.95
107184664--107185182	17	29.8	18	70	14	247	33	11	10	44	1.76
107184652--107184728	34	2.2	35	86	6	104	31	16	9	42	1.80
107184652--107184730	16	4.6	16	76	10	68	30	16	8	44	1.78
107184685--107185034	37	9.8	36	70	16	128	33	12	10	43	1.77
107184794--107185035	35	6.8	34	74	13	159	34	11	11	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344