genome.fa.s10.2.7.7.80.10.50.1000.338.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  338  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109657190--109657293	51	2.0	51	96	0	190	32	11	23	32	1.90
109663600--109663908	103	3.0	102	89	1	444	32	21	11	35	1.88
109678263--109678501	120	2.0	120	95	0	433	23	9	29	37	1.87
109678758--109678814	29	2.0	29	85	0	78	35	14	15	35	1.88
109682512--109682542	16	1.9	16	100	0	62	29	6	6	58	1.48
109686791--109687079	148	1.9	150	89	2	449	42	15	16	25	1.87
109688430--109689022	145	4.1	145	80	4	576	39	21	13	25	1.90
109697276--109697308	11	3.1	11	86	8	50	63	0	0	36	0.95
109697276--109697317	21	2.0	21	86	9	59	61	0	2	35	1.09
109698623--109698701	29	2.7	30	75	15	83	39	2	2	55	1.27
109700520--109700565	4	11.5	4	95	0	65	43	23	6	26	1.78
109702871--109702996	60	2.1	59	81	10	148	38	4	17	38	1.71
109707106--109707164	25	2.3	25	80	16	68	57	5	3	33	1.37
109707151--109707196	17	2.7	18	87	12	62	67	2	4	26	1.21
109707317--109707393	33	2.3	33	80	10	86	63	1	3	31	1.20
109707747--109707793	3	15.7	3	100	0	94	65	0	0	34	0.93
109709775--109709809	11	3.2	11	100	0	70	17	11	42	28	1.83
109717881--109717921	21	2.0	21	85	9	57	46	0	4	48	1.23
109718083--109718116	13	2.6	13	85	0	50	70	14	0	14	1.17
109719067--109719138	38	1.9	37	85	2	99	37	0	11	51	1.38
109721126--109721491	122	3.0	122	80	4	423	27	14	19	38	1.91
109728569--109728617	26	1.9	26	83	4	64	22	12	12	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109731052--109731122	31	2.3	31	77	18	76	36	12	12	38	1.82
109738810--109738849	16	2.5	17	76	15	50	57	0	5	37	1.21
109740238--109740283	23	2.0	23	84	16	60	43	0	4	52	1.21
109744982--109745008	3	9.0	3	100	0	54	66	0	0	33	0.92
109746894--109747959	132	8.1	132	88	3	1607	29	25	16	28	1.97
109746894--109747959	395	2.7	394	91	3	1614	29	25	16	28	1.97
109747800--109747959	44	3.6	44	80	2	178	31	25	16	26	1.97
109748871--109748918	1	48.0	1	100	0	96	0	0	0	100	0.00
109760067--109760096	3	10.0	3	100	0	60	66	0	0	33	0.92
109764879--109764908	13	2.3	13	94	0	51	46	0	10	43	1.37
109770787--109771032	126	2.0	126	90	1	395	28	15	19	36	1.93
109771163--109771218	31	1.9	29	86	13	80	46	21	0	32	1.52
109774345--109774378	17	2.1	17	88	5	52	55	0	0	44	0.99
109778206--109778306	49	2.0	50	86	5	143	46	6	8	37	1.62
109780383--109780413	14	2.2	14	94	0	53	32	0	0	67	0.91
109780782--109780821	21	1.9	21	85	10	55	30	10	7	52	1.62
109785022--109785138	59	2.0	59	91	1	191	30	25	10	33	1.89
109789082--109789254	64	2.8	62	85	7	226	52	14	15	17	1.75
109794359--109794408	21	2.3	21	83	10	57	58	8	6	28	1.51
109801427--109801458	5	6.4	5	92	0	55	78	0	3	18	0.89
109801737--109801836	15	6.9	14	72	18	64	64	4	4	28	1.30
109801766--109801836	3	23.3	3	78	13	74	60	4	2	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109803536--109803638	54	1.9	54	91	0	170	29	15	15	39	1.88
109803597--109803887	44	6.7	44	70	6	178	28	22	18	30	1.97
109803959--109804565	88	6.9	89	91	1	831	23	23	24	28	1.99
109804056--109804458	44	9.2	44	62	13	148	23	22	25	28	1.99
109804276--109804502	44	5.2	43	65	16	142	23	24	25	26	2.00
109805859--109805893	1	35.0	1	88	0	52	0	5	0	94	0.32
109810752--109810783	5	6.4	5	92	0	55	78	0	3	18	0.89
109811063--109811162	15	6.9	14	72	18	64	64	4	4	28	1.30
109811092--109811162	3	23.3	3	78	13	74	60	4	2	32	1.30
109812552--109812628	9	8.6	9	78	5	84	44	16	10	28	1.81
109812552--109812628	27	2.9	27	80	3	93	44	16	10	28	1.81
109812648--109812688	6	6.5	6	83	10	55	17	0	4	78	0.93
109817610--109817658	3	16.3	3	100	0	98	67	0	0	32	0.91
109818632--109818675	18	2.6	18	89	7	65	72	2	6	18	1.17
109818633--109818675	17	2.5	18	88	7	63	74	2	6	16	1.14
109824569--109824745	50	3.5	50	90	2	275	35	16	22	25	1.94
109824721--109824861	31	4.5	31	90	0	219	26	19	29	24	1.98
109824895--109825064	47	3.7	46	87	3	225	28	15	26	30	1.96
109824898--109825128	47	4.8	48	87	4	186	28	13	26	31	1.94
109825035--109825198	42	3.7	43	81	9	172	28	12	28	30	1.93
109827065--109827131	16	4.1	16	69	3	62	2	16	8	71	1.24
109827107--109827284	89	1.9	89	82	6	212	20	11	6	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109827386--109827458	38	1.9	38	94	0	128	26	19	10	43	1.83
109831595--109831635	21	2.0	21	90	0	64	29	21	29	19	1.98
109838007--109838067	30	2.0	30	96	0	113	13	9	26	50	1.72
109845887--109845968	41	2.0	41	100	0	164	46	2	26	24	1.65
109848774--109848814	21	2.0	21	90	0	64	29	21	29	19	1.98
109857991--109858338	130	2.7	130	80	6	348	36	18	17	27	1.93
109865688--109865787	7	13.9	7	77	14	87	20	0	36	44	1.52
109865688--109865785	22	4.6	21	82	6	99	19	0	36	43	1.51
109865688--109865812	15	8.6	14	75	10	83	20	0	34	45	1.51
109865688--109865807	7	16.7	7	77	8	80	20	0	33	46	1.51
109866449--109866556	7	15.4	7	73	12	53	45	34	0	20	1.51
109866721--109867049	115	2.9	115	80	4	360	32	18	15	33	1.92
109867181--109867321	62	2.3	62	84	7	187	19	34	3	43	1.68
109868378--109868495	38	2.9	43	80	12	174	33	9	10	47	1.69
109873429--109873483	26	2.1	26	96	0	101	20	14	14	50	1.77
109876792--109876883	3	30.0	3	71	10	62	35	4	2	57	1.31
109877072--109877115	3	14.3	3	85	4	61	29	0	4	65	1.12
109877398--109877452	15	3.7	14	80	9	65	30	3	3	61	1.30
109877422--109877455	17	2.1	17	88	5	52	26	0	2	70	1.01
109881506--109881576	27	2.7	26	80	14	74	38	1	0	60	1.06
109884332--109884420	25	3.6	25	66	11	67	55	5	8	30	1.54
109892676--109892702	14	1.9	14	100	0	54	44	7	11	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109902298--109902372	18	4.2	18	85	0	87	32	13	24	30	1.93
109905881--109905905	12	2.1	12	100	0	50	20	24	24	32	1.98
109911172--109911260	18	4.9	18	88	0	142	31	13	24	30	1.94
109911172--109911264	36	2.6	36	96	0	168	31	12	24	31	1.93
109915778--109916296	189	2.7	189	91	0	840	30	19	19	31	1.96
109917260--109917298	20	1.9	20	89	5	60	20	17	2	58	1.50
109920482--109920551	33	2.1	33	86	0	95	22	38	2	35	1.69
109923590--109923651	27	2.3	26	76	13	63	38	1	11	48	1.49
109932801--109932871	3	23.7	3	88	5	108	63	0	32	4	1.14
109932800--109932886	18	4.8	18	86	0	120	59	0	31	9	1.28
109932958--109932993	9	4.0	9	92	0	63	41	13	22	22	1.89
109932959--109932997	18	2.2	18	100	0	78	38	17	20	23	1.93
109937335--109937391	28	2.0	28	96	0	105	35	5	21	38	1.76
109941363--109941394	11	2.9	11	100	0	64	46	0	28	25	1.53
109943217--109943251	16	2.1	17	89	5	54	31	2	2	62	1.24
109955119--109955155	18	2.1	18	100	0	74	29	16	27	27	1.97
109970266--109970312	22	2.1	22	84	7	60	51	6	6	36	1.53
109972889--109972931	21	2.0	21	100	0	86	34	18	18	27	1.95
109974446--109974471	3	8.7	3	100	0	52	69	0	0	30	0.89
109975109--109975186	40	2.0	40	86	0	111	15	35	19	29	1.92
109978006--109978395	69	5.7	69	77	3	313	22	22	19	35	1.96
109978006--109978415	138	3.0	137	81	5	450	22	22	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109978111--109978415	69	4.4	69	81	0	315	23	23	18	34	1.96
109977999--109978415	207	2.0	207	79	0	449	22	22	19	35	1.96
109986067--109986131	21	3.2	21	72	12	73	13	26	20	40	1.89
109986049--109986145	39	2.5	39	93	0	158	14	24	23	37	1.92
109989737--109989769	15	2.2	15	89	10	50	6	24	6	63	1.40
109992966--109992992	13	2.1	13	100	0	54	66	0	7	25	1.17
110003343--110003391	23	2.1	23	92	0	80	30	6	44	18	1.74
110004755--110004823	28	2.6	26	84	9	77	42	1	0	56	1.08
110005621--110005777	51	3.1	51	96	1	280	15	31	7	45	1.72
110008974--110009153	72	2.5	74	83	5	215	32	33	13	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344