genome.fa.s10.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  122  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41292207--41292240	15	2.3	15	89	0	50	58	8	0	32	1.29
41299506--41299543	15	2.5	15	91	0	58	52	15	13	18	1.74
41300280--41300447	46	3.6	45	85	8	196	25	29	17	27	1.97
41305667--41305696	15	1.9	16	93	6	53	53	6	20	20	1.67
41310381--41310454	25	3.0	25	91	0	112	31	18	21	28	1.97
41310388--41310462	25	3.0	24	86	3	87	30	17	24	28	1.97
41311892--41311959	30	2.3	30	89	0	100	16	20	35	27	1.94
41317130--41317274	27	5.4	27	75	3	130	35	15	17	31	1.91
41317129--41317274	54	2.7	54	76	6	152	35	15	17	30	1.92
41320830--41321001	27	6.4	27	82	5	188	38	19	13	28	1.90
41320829--41321001	54	3.2	53	84	1	229	38	19	13	28	1.90
41320829--41321001	81	2.1	81	85	5	233	38	19	13	28	1.90
41324218--41324252	18	1.9	18	88	0	52	28	11	11	48	1.74
41327046--41327202	39	4.0	39	91	4	255	20	21	31	27	1.98
41327046--41327202	78	2.0	78	96	0	287	20	21	31	27	1.98
41329922--41329951	12	2.5	12	94	0	51	16	26	33	23	1.96
41338734--41338837	45	2.3	45	89	0	163	36	29	11	22	1.89
41340619--41340729	27	4.2	26	85	5	132	36	21	24	18	1.95
41344732--41344819	6	14.3	6	71	17	65	46	15	18	19	1.84
41344741--41344819	31	2.5	31	89	0	113	46	15	18	18	1.84
41345239--41345442	27	7.6	27	89	0	291	23	21	21	34	1.96
41345437--41345525	27	3.3	27	82	3	99	32	6	17	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41345452--41345530	27	2.9	27	84	0	104	34	5	18	41	1.73
41345519--41345741	27	8.3	27	87	2	277	40	8	21	30	1.82
41345519--41345739	81	2.7	81	89	0	334	40	7	21	29	1.81
41345756--41345840	27	3.2	25	77	12	80	30	8	21	40	1.82
41352285--41352395	27	4.2	26	75	5	105	34	22	24	18	1.96
41352285--41352395	54	2.1	53	80	11	120	34	22	24	18	1.96
41352874--41352915	17	2.4	18	80	4	50	38	28	0	33	1.58
41353790--41353890	24	4.2	24	93	0	166	20	39	3	35	1.72
41363401--41363425	12	2.1	12	100	0	50	16	8	16	60	1.58
41368153--41368371	40	5.5	40	90	2	336	23	23	26	26	2.00
41368153--41368371	79	2.8	80	90	2	336	23	23	26	26	2.00
41368153--41368371	119	1.8	119	90	3	352	23	23	26	26	2.00
41390268--41390490	40	5.6	39	85	3	241	26	27	20	24	1.99
41390268--41390490	120	1.9	119	81	6	272	26	27	20	24	1.99
41392213--41392272	25	2.4	25	82	0	75	20	18	13	48	1.81
41396926--41397105	55	3.2	55	85	9	252	23	28	22	24	1.99
41396926--41397090	61	2.8	59	89	5	239	25	28	22	23	1.99
41398664--41399068	47	8.6	47	89	1	544	25	31	9	33	1.89
41403679--41404535	40	21.6	40	93	2	1428	25	27	21	24	1.99
41406369--41406773	47	8.6	47	89	1	544	25	31	9	33	1.89
41415997--41416025	13	2.3	13	94	5	51	68	0	6	24	1.13
41423311--41423345	17	1.9	19	88	11	56	42	17	0	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41425491--41425547	30	1.9	30	85	0	78	29	22	8	38	1.85
41429861--41429975	27	4.3	26	86	5	149	18	24	22	34	1.96
41430464--41430496	16	2.1	16	94	0	57	39	6	15	39	1.72
41436376--41436465	39	2.3	39	86	3	119	31	20	24	24	1.98
41436458--41436790	39	8.5	39	84	0	423	20	22	27	30	1.98
41436409--41436790	78	4.9	77	80	7	358	21	21	26	29	1.99
41436458--41436790	117	2.8	117	87	0	486	20	22	27	30	1.98
41439227--41439328	42	2.4	42	86	3	143	23	21	24	30	1.99
41447348--41447382	17	2.1	17	100	0	70	34	17	5	42	1.73
41451060--41451239	95	1.9	95	82	2	227	40	20	13	25	1.89
41458763--41458848	40	2.2	40	78	2	93	36	16	23	24	1.94
41460188--41460262	37	2.0	37	97	0	141	30	18	25	25	1.98
41467509--41468082	47	12.4	47	86	10	722	32	8	29	29	1.87
41467570--41467644	37	2.1	36	92	7	125	32	8	32	28	1.86
41468201--41468279	37	2.1	37	86	4	106	25	16	31	26	1.96
41470130--41470232	43	2.4	43	100	0	206	22	15	35	26	1.94
41470214--41470287	29	2.6	29	91	0	112	27	16	31	25	1.96
41470598--41470873	40	6.9	40	82	3	272	24	22	28	25	1.99
41471685--41472220	269	2.0	269	99	0	1054	35	8	18	37	1.82
41474661--41475212	47	11.4	47	90	3	753	32	8	28	29	1.87
41474663--41475197	149	3.6	149	91	2	825	32	8	29	29	1.88
41475330--41475408	37	2.1	37	86	4	106	25	17	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41477373--41477604	49	4.7	49	83	3	293	29	25	18	25	1.98
41477373--41477604	100	2.3	98	85	2	302	29	25	18	25	1.98
41504755--41504779	8	3.1	8	100	0	50	28	0	12	60	1.32
41516673--41516843	46	3.7	47	77	9	172	24	26	19	29	1.98
41516673--41516845	94	1.8	94	85	4	242	24	26	19	30	1.98
41518865--41518932	29	2.3	29	82	5	84	27	29	13	29	1.94
41519039--41519106	29	2.3	29	85	5	93	27	30	13	27	1.94
41519208--41519286	29	2.7	30	82	13	110	29	30	15	25	1.96
41518754--41519255	174	2.9	174	97	0	941	31	24	14	29	1.94
41527165--41527232	29	2.3	29	77	5	75	27	27	13	30	1.94
41527339--41527406	29	2.3	29	85	5	93	27	30	13	27	1.94
41527508--41527586	29	2.7	30	80	13	101	30	30	13	25	1.94
41527054--41527555	174	2.9	174	96	0	923	30	24	14	30	1.95
41536016--41536150	49	2.8	47	81	7	146	22	28	22	26	1.99
41536210--41536336	46	2.8	43	78	10	137	25	27	16	29	1.97
41537590--41537619	8	3.6	8	95	4	51	26	0	13	60	1.34
41538555--41538597	18	2.3	19	80	15	54	23	11	20	44	1.84
41539151--41539200	25	2.0	25	100	0	100	16	24	0	60	1.36
41540429--41540514	27	3.2	26	85	4	109	18	22	20	38	1.94
41542941--41543019	37	2.1	37	90	0	122	25	31	18	24	1.98
41543146--41543184	19	2.1	19	90	0	60	28	25	10	35	1.89
41543165--41543566	47	8.5	47	96	0	723	30	28	8	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41543240--41543318	25	3.3	25	63	10	65	34	26	5	34	1.78
41543475--41543553	25	3.3	25	64	10	74	34	27	5	32	1.79
41552420--41552495	27	2.8	27	92	4	118	21	25	21	32	1.97
41558308--41558398	31	3.0	30	73	13	78	40	13	10	35	1.79
41559684--41560360	295	2.3	297	81	6	759	34	14	10	40	1.80
41563840--41563869	11	2.6	12	89	10	53	20	0	10	70	1.16
41567896--41567935	21	1.9	21	89	0	62	35	25	12	27	1.92
41574362--41574483	38	3.2	38	81	6	138	20	19	27	32	1.97
41578771--41578828	30	1.9	30	93	6	100	39	20	6	32	1.79
41578779--41578828	18	3.1	18	68	31	58	42	22	6	30	1.77
41581471--41581653	79	2.3	81	83	7	223	24	28	22	24	2.00
41581450--41581653	40	5.1	40	81	8	229	24	28	22	24	1.99
41592714--41592908	53	3.6	52	80	6	201	38	16	23	21	1.93
41596425--41596621	55	3.6	53	78	9	184	24	23	16	35	1.95
41597640--41597664	13	1.9	13	100	0	50	36	16	32	16	1.90
41599879--41599913	18	1.9	18	88	11	54	22	20	0	57	1.41
41600925--41600949	12	2.1	12	100	0	50	16	12	0	72	1.13
41600952--41600992	14	2.7	16	85	11	59	7	12	7	73	1.25
41601950--41601974	13	1.9	13	100	0	50	36	16	32	16	1.90
41603972--41604057	28	3.0	28	86	3	118	29	27	13	29	1.95
41610602--41610808	53	3.8	53	75	5	182	38	17	23	20	1.93
41616101--41616163	33	1.9	33	93	0	108	33	17	17	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41616780--41616811	17	1.9	16	93	6	55	12	12	21	53	1.71
41618368--41618415	24	2.0	24	100	0	96	41	0	29	29	1.56
41636068--41636154	44	2.0	44	93	0	147	35	6	21	35	1.81
41647222--41647437	40	5.4	40	90	2	312	23	28	23	25	2.00
41651006--41651072	31	2.2	31	94	0	116	32	16	13	37	1.88
41651564--41651691	47	2.6	48	82	6	152	25	29	17	27	1.97
41651709--41651878	46	3.7	46	82	10	179	25	27	17	30	1.97
41651559--41651878	46	6.8	44	74	14	175	26	28	16	28	1.97
41660183--41660220	19	2.0	19	89	0	58	42	18	26	13	1.87
41664964--41665008	23	2.0	23	95	0	81	26	20	8	44	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344