Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  327  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106737918--106739218
250
5.3
243
76
16
881
27
17
20
34
1.95
106738622--106738652
16
1.9
16
93
0
53
16
12
6
64
1.47
106738552--106738727
89
2.0
90
91
1
291
25
17
19
38
1.93
106738638--106738799
74
2.2
73
92
1
261
24
17
22
35
1.95
106738227--106739130
413
2.2
407
82
10
1051
27
17
20
34
1.95
106738713--106738884
89
1.9
88
92
1
290
27
20
20
31
1.97
106738947--106738974
14
2.0
14
100
0
56
14
14
7
64
1.48
106738388--106739227
161
5.1
161
79
10
854
27
17
19
35
1.95
106738873--106739277
88
4.6
87
80
8
369
27
16
19
35
1.94
106738980--106739194
89
2.4
88
91
2
333
29
16
19
34
1.94
106739151--106739363
88
2.4
89
81
5
218
28
15
19
36
1.93
106742389--106742458
19
3.5
20
76
18
65
57
4
7
31
1.45
106742536--106742583
21
2.4
21
86
6
64
58
4
6
31
1.42
106742545--106742597
21
2.6
21
85
8
65
54
5
7
32
1.52
106742769--106742811
11
3.9
11
81
0
50
60
4
0
34
1.17
106744431--106745237
75
10.8
74
85
5
1040
32
20
16
31
1.94
106744431--106745381
371
2.5
372
93
3
1573
31
20
16
31
1.95
106745152--106745326
91
2.0
88
84
5
226
32
19
19
28
1.96
106745078--106745383
165
1.9
164
88
2
470
29
20
17
32
1.96
106745241--106745383
74
1.9
75
86
2
207
27
22
18
31
1.97
106745828--106745861
17
1.9
18
88
5
52
5
20
29
44
1.75
106752894--106752943
24
2.1
24
85
7
66
42
12
22
24
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106755356--106755438
19
4.2
19
66
23
55
60
6
6
27
1.44
106759038--106759171
26
5.2
26
95
0
232
35
23
7
32
1.83
106759946--106759991
18
2.5
18
80
16
58
28
10
0
60
1.30
106764636--106764706
24
3.0
24
76
0
70
19
25
29
25
1.99
106767896--106767926
11
2.7
12
90
10
55
61
0
22
16
1.34
106770556--106770593
20
1.9
20
100
0
76
28
0
5
65
1.14
106771865--106771907
16
2.6
17
85
7
54
44
0
2
53
1.13
106771865--106771904
17
2.5
16
84
11
55
42
0
2
55
1.13
106774912--106774941
11
2.6
11
94
5
51
80
0
3
16
0.85
106777054--106777340
137
2.1
137
95
0
511
32
24
18
24
1.97
106779125--106779226
26
3.9
26
97
0
177
36
25
5
32
1.80
106784793--106784845
21
2.5
21
90
6
81
30
35
9
24
1.87
106786063--106786104
21
2.0
20
86
9
57
59
16
2
21
1.48
106796363--106796402
19
2.0
20
85
4
55
45
0
5
50
1.23
106800943--106801024
26
3.2
26
92
0
137
36
23
6
34
1.79
106802056--106802090
14
2.6
13
86
8
52
40
0
0
60
0.97
106804717--106804763
21
2.2
22
92
3
78
21
38
19
21
1.94
106812927--106813007
31
2.6
30
79
14
83
27
7
14
50
1.69
106813027--106813061
10
3.5
10
84
0
52
74
0
0
25
0.82
106813484--106813555
29
2.4
29
86
2
99
27
6
0
65
1.18
106813495--106813546
10
5.4
10
78
15
56
30
1
0
67
1.02
106813610--106813677
10
7.2
9
69
21
50
42
2
1
52
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106813608--106813677
28
2.5
28
90
2
104
42
2
1
52
1.24
106817117--106817180
34
1.9
33
87
3
92
59
6
7
26
1.49
106820595--106820656
19
3.4
19
70
17
67
41
11
22
24
1.86
106820588--106820659
36
2.0
36
100
0
144
38
11
25
25
1.88
106824405--106824445
21
2.0
21
90
0
64
19
29
21
29
1.98
106826634--106826665
6
5.3
6
100
0
64
84
0
0
15
0.63
106828013--106828064
23
2.3
22
75
21
54
9
23
1
65
1.32
106830466--106830497
6
5.3
6
100
0
64
84
0
0
15
0.63
106830497--106830530
17
2.0
17
88
11
52
23
26
14
35
1.94
106834311--106834362
9
5.3
9
78
15
50
32
0
1
65
1.04
106836729--106836798
31
2.2
32
82
12
92
50
2
4
42
1.37
106844756--106844857
26
3.9
26
93
0
177
32
6
24
36
1.82
106849667--106849708
18
2.3
19
88
12
61
69
4
0
26
1.08
106849667--106849785
56
2.2
55
90
6
188
63
11
0
23
1.33
106851531--106851580
21
2.4
21
96
0
91
26
30
28
16
1.96
106853398--106853453
24
2.3
25
96
3
105
32
8
7
51
1.60
106856135--106856202
34
2.0
34
100
0
136
41
14
14
29
1.86
106857037--106857108
36
2.0
36
100
0
144
36
11
13
38
1.81
106861783--106861845
31
2.0
32
90
3
101
38
17
9
34
1.82
106861944--106861974
16
1.9
16
100
0
62
32
0
3
64
1.09
106861946--106861981
16
2.2
16
90
0
54
33
2
2
61
1.25
106863066--106863096
15
2.1
15
100
0
62
38
25
12
22
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106863105--106863146
20
2.1
20
90
0
66
30
16
11
40
1.85
106866514--106866548
18
1.9
18
88
0
52
20
20
28
31
1.97
106867790--106867820
15
2.1
15
100
0
62
38
25
12
22
1.90
106867829--106867870
20
2.1
20
86
0
57
30
16
11
40
1.85
106868295--106868413
63
1.9
63
91
1
195
36
8
6
48
1.60
106870609--106870668
31
1.9
32
86
3
86
43
15
5
36
1.68
106870768--106870805
16
2.4
16
90
0
58
31
7
0
60
1.25
106871819--106871868
27
1.9
25
84
15
66
46
12
26
16
1.81
106871887--106871923
19
1.9
19
89
10
58
21
5
10
62
1.48
106875366--106875394
10
2.7
11
94
5
51
82
0
0
17
0.66
106877146--106877190
23
2.0
23
82
8
56
37
8
13
40
1.76
106878701--106879016
125
2.5
125
83
2
404
38
16
14
30
1.89
106879357--106879428
15
5.0
14
75
15
58
63
1
8
26
1.30
106879983--106880009
5
5.4
5
100
0
54
81
0
0
18
0.69
106880811--106880943
42
3.1
42
65
12
108
23
24
17
35
1.95
106880649--106881482
86
9.6
86
87
2
1064
20
23
20
35
1.96
106880983--106881210
42
5.3
42
65
19
121
19
23
21
35
1.95
106881553--106881676
64
1.9
64
95
0
221
38
16
15
29
1.89
106887521--106887745
125
1.8
125
87
0
333
39
15
15
30
1.88
106887566--106887831
125
2.1
124
84
4
349
38
16
14
30
1.88
106888134--106888236
29
3.6
29
71
14
79
66
0
4
29
1.13
106888161--106888206
15
3.3
14
82
17
60
73
0
0
26
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106888161--106888253
15
7.0
14
70
15
56
66
0
5
27
1.13
106900024--106900053
13
2.3
13
94
0
51
60
3
0
36
1.14
106904280--106904336
19
3.1
19
80
14
66
61
0
1
36
1.07
106904284--106904342
27
2.1
28
84
3
75
59
1
1
37
1.18
106905436--106905528
18
5.2
18
86
0
132
26
21
17
34
1.95
106905436--106905528
36
2.6
36
92
0
150
26
21
17
34
1.95
106913919--106913963
21
2.0
23
83
8
58
40
0
4
55
1.20
106913919--106914007
23
4.0
22
72
11
74
40
0
7
51
1.31
106920634--106920735
51
2.0
51
96
0
186
31
11
27
29
1.92
106922960--106923016
10
5.2
11
76
21
57
33
0
3
63
1.12
106923273--106923315
22
2.0
22
95
0
77
34
0
20
44
1.52
106925877--106925966
40
2.3
40
94
1
155
31
30
16
22
1.96
106939326--106939390
32
2.0
32
100
0
130
38
24
6
30
1.80
106940808--106940998
34
5.6
34
73
4
152
42
11
12
33
1.79
106940814--106940988
68
2.6
68
77
5
183
42
10
13
34
1.78
106946488--106946516
3
9.7
3
100
0
58
0
31
0
68
0.89
106949117--106949154
18
2.1
18
95
0
67
21
21
31
26
1.98
106948996--106949513
201
2.6
200
89
1
757
28
17
29
24
1.97
106953459--106953566
44
2.4
44
85
3
135
29
22
13
34
1.93
106960823--106960930
44
2.4
44
87
3
144
29
23
13
33
1.93
106965481--106965510
15
2.0
15
93
0
51
50
13
30
6
1.67
106966266--106966293
3
9.3
3
100
0
56
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106966515--106966678
36
4.4
38
71
16
112
53
1
7
37
1.38
106966909--106966949
9
4.8
9
76
11
50
34
0
9
56
1.32
106966908--106966949
16
2.5
17
80
11
50
35
0
9
54
1.33
106968787--106968830
19
2.4
19
85
7
56
50
0
9
40
1.34
106971381--106971423
21
2.0
21
81
0
50
23
4
55
16
1.59
106977419--106977469
10
5.1
10
80
17
54
68
1
7
21
1.25
106977419--106977469
20
2.5
21
81
15
63
68
1
7
21
1.25
106979403--106979499
12
8.5
11
68
23
58
73
2
0
24
0.94
106979410--106979485
5
14.0
5
81
10
80
73
2
0
23
0.95
106979410--106979480
28
2.5
28
100
0
142
73
2
0
23
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344