genome.fa.s10.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  128  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43309472--43309574	43	2.4	43	95	0	179	24	14	33	27	1.94
43309556--43309629	29	2.5	30	80	6	89	27	17	29	25	1.97
43309944--43310179	40	5.9	40	89	2	330	23	22	28	25	1.99
43313057--43313234	27	6.6	26	82	6	169	26	15	28	29	1.96
43313058--43313213	82	1.9	81	86	3	224	26	16	28	28	1.97
43321167--43321344	27	6.6	26	82	6	178	26	15	28	29	1.96
43321168--43321323	82	1.9	81	86	3	224	26	16	28	28	1.97
43321164--43321344	82	2.2	81	82	2	220	27	16	27	29	1.97
43321249--43321355	27	3.9	27	85	1	70	26	14	28	30	1.95
43325059--43325725	47	14.1	47	95	0	1046	31	10	30	28	1.90
43325888--43325966	37	2.1	37	88	0	113	25	18	30	25	1.98
43340188--43340265	25	3.2	25	64	10	72	32	28	5	34	1.79
43340137--43340601	47	9.6	47	93	2	696	29	29	8	33	1.86
43342192--43342216	13	1.9	13	100	0	50	36	16	16	32	1.90
43344196--43344465	40	6.8	40	89	0	387	27	28	20	24	1.99
43344196--43344465	120	2.2	120	91	0	432	27	28	20	24	1.99
43345910--43346013	47	2.2	47	82	0	127	26	30	9	32	1.89
43347595--43347766	79	2.2	79	82	3	211	25	20	27	26	1.99
43347595--43347764	40	4.3	39	85	5	198	25	21	27	25	1.99
43363182--43363457	50	5.5	50	79	9	301	28	26	17	27	1.97
43363338--43363420	26	3.3	26	64	24	68	32	28	12	26	1.92
43363186--43363426	101	2.4	98	82	7	288	29	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43363185--43363457	151	1.8	150	89	3	431	29	26	17	26	1.97
43363889--43363924	17	2.1	18	89	5	56	19	27	36	16	1.93
43363983--43364063	27	3.0	27	85	0	99	32	18	20	28	1.97
43364048--43364116	26	2.6	27	81	4	77	43	18	7	30	1.77
43364099--43364356	27	9.5	27	79	6	191	40	22	11	25	1.87
43364288--43364367	28	2.9	27	77	15	83	43	20	10	26	1.82
43364369--43364450	27	3.0	26	79	13	76	39	14	10	35	1.82
43364398--43364450	27	2.0	27	88	0	79	39	13	13	33	1.83
43364712--43364829	41	2.9	41	83	5	157	22	21	29	26	1.99
43364989--43365036	22	2.2	22	85	7	62	22	29	20	27	1.99
43367579--43367635	27	2.1	27	86	0	78	31	14	24	29	1.94
43367641--43367690	26	1.9	26	91	0	82	36	18	10	36	1.84
43367732--43367915	27	6.9	26	78	11	124	36	22	11	29	1.89
43367734--43367914	53	3.4	55	82	6	167	37	22	11	28	1.89
43367818--43368025	54	3.9	54	76	6	163	43	21	7	27	1.78
43367870--43367995	27	4.6	27	81	1	126	49	20	3	26	1.66
43368291--43368413	41	3.0	41	85	0	174	24	19	26	29	1.98
43368555--43368619	22	3.0	22	77	8	78	21	24	21	32	1.98
43368988--43369046	27	2.2	27	78	0	64	23	18	23	33	1.97
43370759--43370792	17	1.9	18	88	5	52	32	29	2	35	1.73
43372079--43372141	18	3.4	18	78	8	65	69	4	15	9	1.32
43373504--43373570	20	3.3	20	80	2	80	22	26	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43374130--43374958	414	2.0	414	96	0	1532	31	15	19	33	1.93
43375283--43375319	17	2.1	18	90	5	58	32	32	2	32	1.72
43378961--43379039	37	2.1	37	90	0	122	25	31	18	24	1.98
43379158--43379699	47	11.4	47	92	1	823	29	29	8	32	1.87
43383230--43383386	40	3.9	40	92	0	242	24	26	22	26	2.00
43383243--43383465	40	5.6	40	84	5	238	23	26	23	26	2.00
43383771--43383849	29	2.7	29	86	5	106	27	32	15	24	1.95
43385746--43385824	37	2.1	37	88	4	115	26	31	17	24	1.97
43385943--43386484	47	11.4	47	91	1	787	28	29	9	32	1.88
43388828--43389012	79	2.3	81	83	7	227	24	22	27	24	2.00
43388829--43389012	40	4.6	40	82	9	207	25	22	27	24	2.00
43388881--43389045	79	2.1	79	83	6	201	26	21	27	24	1.99
43404702--43405199	47	10.6	47	89	1	712	32	10	30	25	1.90
43405318--43405397	37	2.2	37	86	4	108	23	17	31	27	1.97
43417392--43417451	27	2.3	26	85	2	75	35	20	23	21	1.96
43417493--43417543	27	1.9	26	84	4	66	35	19	27	17	1.94
43418196--43418314	27	4.4	27	83	0	148	25	19	20	35	1.96
43419273--43419336	31	2.1	31	90	0	101	25	23	15	35	1.94
43419542--43419694	24	6.4	24	91	4	247	28	19	20	32	1.97
43419751--43419827	9	7.9	9	72	16	64	35	22	7	35	1.83
43419747--43419829	20	4.2	20	93	0	148	32	20	10	36	1.87
43419866--43419913	25	1.9	25	91	0	78	25	14	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43442601--43442821	40	5.6	40	80	6	245	25	27	23	24	2.00
43446000--43446143	40	3.6	40	88	1	191	20	23	29	25	1.99
43455316--43455500	40	4.6	40	81	8	214	25	27	23	24	2.00
43458142--43458171	15	1.9	16	93	6	53	63	0	36	0	0.95
43458132--43458209	23	3.6	21	74	19	72	65	0	33	1	1.01
43459101--43459194	42	2.2	42	83	3	109	14	30	27	26	1.95
43464018--43464046	13	2.2	13	100	0	58	37	27	20	13	1.91
43466978--43467029	26	2.0	26	100	0	104	42	0	23	34	1.54
43470606--43470867	131	2.0	131	99	0	515	27	16	26	30	1.96
43471748--43471799	14	3.8	13	76	14	52	1	19	0	78	0.84
43485450--43485506	28	2.0	28	86	0	78	22	15	35	26	1.94
43485823--43486056	27	8.7	28	78	10	215	39	17	10	32	1.84
43485836--43486045	54	3.9	53	84	8	246	38	18	10	32	1.85
43486008--43486099	27	3.4	27	84	3	96	41	17	13	28	1.86
43490741--43491779	348	3.0	349	98	0	1999	33	17	17	31	1.93
43492227--43492252	7	3.7	7	100	0	52	0	11	46	42	1.40
43493484--43493517	16	2.1	16	94	0	59	50	29	14	5	1.67
43495698--43495728	15	2.1	14	94	5	53	12	0	3	83	0.75
43497246--43497453	41	5.1	40	74	9	136	33	15	28	22	1.94
43497423--43497487	34	1.9	34	96	0	121	36	15	26	21	1.93
43497457--43497548	41	2.2	41	86	3	105	33	13	28	25	1.93
43503390--43503561	49	3.5	49	78	5	170	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43503336--43503568	98	2.4	96	82	4	281	23	28	21	26	1.99
43507558--43507599	22	2.0	21	90	4	66	30	0	7	61	1.22
43507563--43507613	22	2.3	23	80	10	61	27	0	9	62	1.26
43515219--43515389	93	1.8	93	94	0	306	28	28	21	22	1.99
43515211--43515386	46	3.8	46	79	10	214	28	27	21	22	1.99
43519514--43519570	9	5.9	9	73	15	51	35	8	21	35	1.84
43519512--43519582	20	3.5	20	94	0	124	35	11	21	32	1.89
43519523--43519577	11	5.4	11	70	16	55	36	12	20	30	1.90
43519628--43519792	24	6.9	24	88	6	239	28	21	21	27	1.99
43519628--43519793	47	3.5	46	87	8	219	28	21	21	27	1.99
43519628--43519792	71	2.3	71	90	7	255	28	21	21	27	1.99
43521448--43521497	22	2.3	22	86	6	66	26	0	8	66	1.19
43523269--43523547	49	5.6	49	73	7	211	31	26	16	25	1.97
43523261--43523547	150	1.9	149	85	5	391	31	26	17	25	1.97
43524278--43524316	16	2.4	17	86	4	53	51	28	5	15	1.64
43525596--43525647	16	3.2	16	80	0	59	51	17	19	11	1.75
43543092--43543130	16	2.4	16	78	0	51	38	15	10	35	1.81
43543354--43543627	49	5.5	49	78	4	262	30	26	18	24	1.98
43543351--43543629	101	2.8	100	78	5	287	30	26	18	24	1.98
43552902--43553117	46	4.6	48	80	8	214	24	31	17	27	1.97
43552902--43553123	47	4.7	47	78	8	186	23	31	17	27	1.97
43559451--43559476	11	2.4	11	100	0	52	53	19	0	26	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43559867--43560009	27	5.3	27	86	1	137	30	13	18	38	1.89
43559907--43560301	27	14.7	27	81	4	422	31	9	19	38	1.85
43560607--43560680	28	2.6	28	89	2	103	27	35	16	21	1.94
43569403--43569565	47	3.5	46	75	17	176	22	17	29	30	1.97
43569347--43569611	92	2.9	93	91	3	435	21	18	30	29	1.97
43582687--43582712	2	13.0	2	100	0	52	0	50	0	50	1.00
43588424--43588490	6	11.2	6	81	0	62	28	10	0	61	1.29
43588424--43588490	9	7.4	9	79	0	62	28	10	0	61	1.29
43593480--43593512	15	2.2	16	89	10	52	54	21	0	24	1.45
43593898--43593966	22	3.1	22	91	0	111	46	18	20	14	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344