Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  317  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104062342--104062425
11
7.3
11
74
22
50
70
3
1
25
1.11
104062671--104062726
29
1.9
29
85
0
76
21
1
17
58
1.47
104072908--104072969
19
3.0
20
83
11
81
48
0
1
50
1.10
104074590--104074633
22
2.0
23
82
13
56
56
0
9
34
1.31
104076648--104076756
21
5.2
21
78
0
101
16
23
16
43
1.87
104076677--104076756
42
1.9
42
89
0
124
17
23
17
41
1.90
104080529--104080599
21
3.4
21
84
0
79
18
25
15
40
1.89
104081336--104081370
17
2.1
17
100
0
70
20
28
11
40
1.87
104089137--104089198
18
3.4
18
76
8
63
27
14
12
45
1.82
104090889--104090939
23
2.2
23
82
6
59
35
5
23
35
1.79
104092078--104092189
29
3.9
29
92
0
170
14
23
39
23
1.91
104092117--104092170
17
3.5
17
71
23
64
12
27
38
20
1.89
104093914--104093981
33
2.1
33
83
5
84
70
4
8
16
1.29
104095396--104095429
2
17.0
2
100
0
68
50
0
50
0
1.00
104098767--104098819
23
2.4
22
76
20
56
9
18
1
69
1.25
104102280--104102310
16
1.9
16
93
0
53
58
3
3
35
1.31
104103442--104103485
22
2.0
22
90
0
70
22
15
25
36
1.94
104104106--104104151
18
2.6
18
80
19
60
73
6
8
10
1.23
104104463--104104521
26
2.2
27
90
3
93
42
10
6
40
1.65
104104465--104104523
27
2.2
26
90
3
91
42
10
6
40
1.65
104108638--104109174
149
3.6
150
87
3
798
29
7
5
56
1.51
104108944--104109001
15
3.8
16
73
11
50
27
5
1
65
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104108637--104109174
148
3.6
151
87
3
795
29
7
5
56
1.51
104109738--104109807
3
24.0
3
74
11
65
0
34
0
65
0.93
104109740--104109808
22
3.4
22
82
9
85
0
33
0
66
0.92
104127689--104127746
7
7.0
9
81
15
56
77
0
1
20
0.86
104127694--104127753
20
3.1
18
77
17
59
80
0
3
16
0.85
104131503--104131564
27
2.3
26
76
13
63
48
11
1
38
1.49
104136805--104136850
22
2.1
22
91
0
74
52
10
36
0
1.37
104141456--104141503
23
2.1
23
100
0
96
39
14
0
45
1.45
104143217--104143244
13
2.2
13
100
0
56
28
0
7
64
1.20
104143320--104143347
13
2.2
13
100
0
56
28
0
7
64
1.20
104144525--104144558
15
2.2
16
89
5
52
67
0
11
20
1.21
104153743--104153772
15
2.0
15
93
0
51
10
13
3
73
1.21
104160021--104160075
29
1.9
29
85
10
78
29
1
30
38
1.68
104160571--104160637
29
2.3
29
84
5
82
28
2
34
34
1.73
104161851--104161919
16
4.2
16
96
3
129
24
0
37
37
1.56
104161851--104161919
33
2.1
32
97
2
129
24
0
37
37
1.56
104161900--104161990
45
2.0
45
85
2
121
27
6
28
37
1.82
104162174--104162200
7
3.9
7
100
0
54
44
0
0
55
0.99
104167192--104167225
18
2.0
16
88
11
50
76
8
0
14
1.01
104167192--104167225
17
1.9
18
88
5
52
76
8
0
14
1.01
104167432--104167491
26
2.3
25
83
11
68
63
5
1
30
1.25
104168818--104168869
20
2.6
20
76
11
52
40
23
28
7
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104170992--104171017
13
2.0
13
100
0
52
38
30
0
30
1.58
104173681--104173753
32
2.3
32
81
6
87
69
4
1
24
1.13
104174725--104174777
27
2.0
26
85
3
70
28
7
1
62
1.33
104174891--104174918
13
2.2
13
100
0
56
42
21
7
28
1.79
104177926--104178020
45
2.1
44
86
1
127
34
5
26
33
1.79
104178182--104178216
18
2.0
17
88
5
52
54
0
0
45
0.99
104178140--104178212
27
2.7
27
76
8
76
52
2
0
45
1.15
104178329--104178363
18
2.0
17
88
5
52
54
0
0
45
0.99
104178101--104178375
147
1.9
149
95
1
500
46
3
2
47
1.35
104178119--104178456
147
2.3
147
79
8
341
47
4
2
44
1.38
104178431--104178483
16
3.4
17
73
21
53
58
0
0
41
0.98
104178309--104178603
119
2.5
119
92
3
484
50
4
2
42
1.35
104185505--104185542
17
2.3
17
95
4
69
23
23
15
36
1.94
104190840--104190893
18
3.3
18
66
28
57
24
50
7
18
1.72
104190830--104190898
30
2.3
30
100
0
138
27
52
5
14
1.64
104195338--104195856
73
7.1
73
90
3
758
28
17
22
31
1.97
104195845--104195877
15
2.2
15
94
0
57
21
9
0
69
1.15
104195791--104196004
88
2.4
88
92
3
351
30
14
16
37
1.90
104195933--104195965
16
2.1
16
94
0
57
21
9
0
69
1.15
104196834--104196932
30
3.3
30
94
0
180
26
50
6
17
1.69
104198433--104198485
13
4.1
13
72
18
56
39
16
5
37
1.73
104199478--104199510
15
2.2
15
89
10
50
30
0
3
66
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104204518--104204831
46
6.8
46
90
0
414
40
14
24
21
1.90
104211394--104211430
18
2.1
18
89
0
56
51
24
2
21
1.61
104214509--104214554
23
2.0
24
83
8
60
43
17
21
17
1.88
104216215--104216311
49
2.0
49
93
0
167
46
9
16
27
1.77
104217014--104217049
16
2.2
17
90
5
56
36
19
8
36
1.82
104225175--104225209
18
1.9
18
94
0
61
57
0
0
42
0.99
104225190--104225231
22
2.0
21
85
4
57
69
0
0
30
0.89
104225851--104225891
11
3.8
11
81
18
50
46
0
0
53
1.00
104225875--104225905
13
2.3
14
94
5
55
45
0
0
54
0.99
104231935--104231975
2
20.5
2
100
0
82
0
48
0
51
1.00
104240286--104240341
27
2.0
27
86
3
76
64
1
1
32
1.14
104246216--104246270
26
2.1
26
86
6
76
43
20
5
30
1.74
104246224--104246279
26
2.1
26
90
6
85
37
21
5
35
1.76
104249579--104249607
14
2.1
14
100
0
58
0
13
41
44
1.44
104256096--104256164
34
2.0
34
94
0
120
26
15
20
37
1.93
104262197--104262246
25
2.0
25
100
0
100
20
20
12
48
1.80
104270365--104270422
3
19.3
3
96
0
107
68
0
31
0
0.89
104270364--104270435
12
6.0
12
91
4
62
66
0
33
0
0.92
104271513--104271563
21
2.4
21
75
18
52
9
9
39
41
1.71
104272301--104272479
89
2.0
89
86
0
250
40
16
14
28
1.88
104272597--104272684
6
14.7
6
86
4
124
63
13
4
18
1.46
104273110--104273149
21
1.9
21
94
0
71
25
30
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104280859--104280890
12
2.7
12
95
0
55
28
31
12
28
1.93
104294303--104294343
12
3.4
12
86
0
64
51
0
2
46
1.14
104294303--104294352
6
8.3
6
75
16
50
48
0
4
48
1.20
104294303--104294352
24
2.1
24
100
0
100
48
0
4
48
1.20
104294310--104294352
12
3.6
12
87
0
68
46
0
4
48
1.22
104295272--104295325
28
1.9
28
84
0
72
61
5
1
31
1.30
104302457--104302511
27
2.1
26
83
10
67
12
16
0
70
1.16
104305394--104305482
31
2.9
31
81
0
97
33
10
8
47
1.69
104306478--104306523
20
2.3
20
100
0
92
39
4
8
47
1.54
104307662--104307688
6
4.5
6
100
0
54
48
14
18
18
1.82
104309941--104309998
24
2.5
24
78
10
59
50
3
0
46
1.18
104309941--104310000
23
2.6
24
81
5
70
51
3
0
45
1.17
104310017--104310042
7
3.7
7
100
0
52
53
15
0
30
1.42
104311881--104312042
31
5.2
31
84
0
162
33
13
10
41
1.79
104318535--104318779
121
2.0
121
95
0
436
30
22
19
27
1.98
104321643--104321682
18
2.3
18
86
4
55
75
0
0
25
0.81
104321662--104321734
29
2.4
30
78
17
80
63
0
2
34
1.09
104321801--104321856
19
2.8
20
76
13
62
62
3
5
28
1.34
104322228--104322302
16
4.4
17
71
25
52
53
0
0
46
1.00
104329323--104329348
9
2.9
9
100
0
52
46
23
19
11
1.82
104331511--104331540
12
2.5
12
88
0
51
6
0
43
50
1.28
104331591--104331620
12
2.5
12
88
0
51
6
0
43
50
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104331493--104331655
80
2.0
80
100
0
326
21
4
33
40
1.75
104333891--104333942
23
2.2
24
86
10
72
67
3
0
28
1.08
104344424--104344546
63
2.0
63
95
0
219
32
21
13
31
1.93
104353397--104353466
29
2.4
29
87
0
113
12
25
37
24
1.91
104362442--104362514
36
2.0
36
100
0
146
50
13
10
24
1.74
104374959--104375007
25
2.0
25
84
8
64
32
6
4
57
1.42
104389244--104389351
26
4.2
26
95
0
180
33
7
23
36
1.83
104391707--104391971
40
6.7
40
84
6
297
26
21
27
25
1.99
104399709--104399908
36
5.4
35
80
12
165
28
19
27
26
1.98
104399709--104399908
76
2.7
75
80
11
202
28
19
27
26
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344