Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  11  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3910160--3910715
143
4.0
142
82
6
588
31
19
22
26
1.98
3910720--3911054
179
1.9
179
80
1
402
31
19
17
32
1.95
3911370--3911424
27
2.0
27
92
0
92
27
38
25
9
1.86
3914072--3914143
29
2.4
30
80
15
78
50
13
12
23
1.76
3914224--3914278
29
1.9
28
85
3
74
25
10
7
56
1.59
3922302--3922335
17
2.0
17
88
11
52
58
0
2
38
1.13
3922921--3922953
16
2.1
15
94
5
57
57
24
6
12
1.57
3926302--3926354
24
2.3
24
75
15
58
45
3
7
43
1.50
3926542--3926583
21
2.0
22
86
13
61
45
0
11
42
1.41
3926564--3926610
19
2.5
19
79
6
51
57
0
6
36
1.24
3930793--3930860
34
2.0
34
94
0
118
57
7
7
27
1.53
3933696--3933729
15
2.3
15
89
0
50
67
2
0
29
1.05
3934883--3934927
12
3.8
12
78
0
54
24
33
8
33
1.86
3935202--3935250
18
2.7
18
72
15
55
36
2
2
59
1.21
3935216--3935274
25
2.3
25
82
2
73
33
5
5
55
1.43
3943159--3943252
46
2.0
46
95
0
170
39
18
20
22
1.92
3943610--3943654
22
2.0
23
83
12
58
82
2
4
11
0.91
3943820--3943924
47
2.2
47
86
3
149
19
15
3
61
1.48
3943843--3943912
23
3.0
24
71
23
58
17
17
4
61
1.50
3943867--3944038
84
2.0
84
89
0
263
23
18
2
55
1.56
3944270--3944302
17
1.9
17
88
11
50
9
12
6
72
1.26
3944441--3944492
26
2.0
26
96
0
95
30
1
15
51
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3948511--3948608
43
2.3
43
85
0
133
19
34
26
19
1.96
3953951--3954073
48
2.6
47
77
5
113
38
26
14
20
1.91
3953985--3954077
48
1.9
48
84
0
123
38
26
16
18
1.91
3960066--3960118
21
2.5
21
75
9
54
33
7
3
54
1.46
3961564--3961638
37
2.0
37
82
5
89
56
5
10
28
1.55
3962001--3962059
3
20.3
3
78
13
61
66
1
1
30
1.12
3963563--3964585
132
7.8
132
91
1
1444
29
26
16
27
1.97
3963641--3964717
176
6.1
175
81
3
1144
29
27
15
27
1.96
3963551--3964717
44
26.5
45
76
3
975
29
26
15
27
1.96
3972935--3972959
13
1.9
13
100
0
50
56
4
0
40
1.18
3973065--3973126
3
21.3
3
79
12
67
66
1
1
30
1.11
3980751--3980944
96
2.0
96
97
2
372
46
12
14
26
1.80
3980910--3980990
36
2.2
36
97
2
153
49
16
4
29
1.66
3985974--3986012
18
2.2
18
86
9
53
48
5
5
41
1.47
3988720--3989231
131
3.9
131
79
4
496
29
19
16
34
1.94
3993741--3993787
25
2.0
25
83
8
62
27
14
4
53
1.60
3994048--3994311
46
6.0
46
83
9
325
21
24
15
38
1.92
3994227--3994300
36
2.1
36
100
0
148
22
25
18
32
1.97
3997147--3997183
17
2.1
19
85
10
51
62
2
8
27
1.37
3997261--3997325
3
21.3
3
73
14
53
60
1
7
30
1.34
3997367--3997574
3
66.7
3
68
10
96
57
3
8
30
1.45
3997662--3997765
3
34.0
3
67
12
52
56
2
8
31
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4001980--4002023
22
2.0
23
81
4
54
38
25
0
36
1.56
4002981--4003023
7
6.0
7
79
15
52
81
2
2
13
0.89
4002996--4003026
16
1.9
16
100
0
62
83
0
3
12
0.75
4002996--4003026
8
3.9
8
91
0
53
83
0
3
12
0.75
4014599--4014654
13
4.4
12
80
10
51
32
10
14
42
1.80
4026275--4026394
48
2.5
48
85
2
154
27
22
15
35
1.94
4031303--4031422
48
2.5
48
85
2
154
27
20
15
36
1.92
4036026--4036057
16
2.1
15
94
5
55
59
3
0
37
1.13
4036817--4036869
26
2.0
27
82
10
65
58
1
9
30
1.40
4037477--4037547
31
2.3
31
80
0
79
26
12
7
53
1.64
4058931--4058982
24
2.2
24
89
0
77
55
9
1
32
1.43
4061391--4061429
18
2.2
18
85
0
51
28
0
0
71
0.86
4065590--4065664
24
3.0
26
75
11
84
33
16
17
33
1.92
4065861--4065897
19
1.9
19
89
10
58
32
8
0
59
1.27
4086311--4086401
31
2.9
31
75
16
89
28
2
3
65
1.20
4093186--4093246
29
2.1
29
87
0
86
50
11
6
31
1.64
4096750--4096850
31
3.3
31
91
2
152
48
8
11
30
1.71
4105139--4105171
8
4.2
8
84
7
50
87
0
12
0
0.53
4105132--4105166
10
3.4
10
92
4
52
88
0
8
2
0.61
4105132--4105168
15
2.5
15
91
8
58
89
0
8
2
0.58
4110419--4110463
2
22.5
2
100
0
90
51
0
48
0
1.00
4113274--4113461
72
2.6
72
98
0
360
42
23
6
27
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4113462--4113499
3
12.7
3
100
0
76
68
0
0
31
0.90
4117714--4117901
72
2.6
72
98
0
360
42
23
6
27
1.79
4117902--4117942
3
13.7
3
100
0
82
68
0
0
31
0.90
4126129--4126162
4
8.5
4
93
0
50
0
0
17
82
0.67
4135786--4135896
37
2.9
39
74
19
110
52
0
12
34
1.46
4138488--4138521
12
2.8
12
90
0
50
67
0
0
32
0.91
4139446--4139513
9
6.4
10
72
21
50
63
2
5
27
1.32
4139467--4139509
22
1.9
23
86
13
63
60
2
6
30
1.35
4139640--4139683
22
2.0
22
87
12
65
29
4
0
65
1.12
4141871--4141911
21
2.0
21
85
0
55
34
4
0
60
1.18
4141884--4141945
23
2.5
26
76
15
67
43
1
0
54
1.09
4141892--4141943
23
2.2
24
86
6
70
46
1
0
51
1.12
4144452--4144503
22
2.4
23
81
9
65
28
3
7
59
1.43
4176768--4176938
85
2.0
85
95
0
306
38
22
7
32
1.81
4181566--4181590
11
2.3
11
100
0
50
44
0
16
40
1.47
4186428--4186556
50
2.5
51
88
5
190
35
17
21
25
1.95
4186534--4186724
31
6.2
31
92
0
301
29
18
25
26
1.98
4186746--4186860
47
2.4
47
85
2
142
30
14
25
29
1.95
4186831--4186912
42
2.0
42
85
0
110
34
14
20
30
1.93
4188159--4188544
133
2.9
132
82
8
446
34
18
17
28
1.94
4191260--4191667
133
3.1
133
92
0
647
29
24
18
27
1.98
4198641--4198696
20
2.6
21
81
10
69
57
5
3
33
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4198648--4198697
23
2.3
22
86
10
68
58
6
2
34
1.34
4198525--4198838
157
2.0
154
79
13
336
55
7
4
33
1.48
4198656--4198738
25
3.4
25
73
14
75
55
4
6
33
1.46
4198802--4198859
21
2.8
21
87
7
75
56
6
1
34
1.36
4198848--4198889
3
14.0
3
94
0
75
64
0
0
35
0.94
4198951--4199019
18
3.9
17
78
17
70
60
2
2
33
1.26
4199090--4199148
23
2.4
25
75
21
61
52
5
6
35
1.50
4199090--4199137
23
2.0
24
84
4
62
54
4
6
35
1.45
4199231--4199323
46
2.0
47
83
10
120
59
5
6
29
1.45
4199306--4199342
14
2.5
15
80
20
51
59
8
2
29
1.40
4199356--4199399
23
1.9
23
90
0
70
59
4
4
31
1.38
4199508--4199591
34
2.4
35
76
11
93
59
0
5
34
1.22
4200167--4200220
20
2.6
20
76
5
63
16
3
1
77
1.00
4201257--4201642
85
4.4
85
86
6
483
36
19
14
29
1.92
4201257--4201642
174
2.2
171
84
7
485
36
19
14
29
1.92
4207326--4207621
46
6.9
39
82
15
290
36
15
24
22
1.94
4207365--4207665
46
6.7
46
88
6
422
37
15
24
21
1.93
4207316--4207621
84
3.5
84
93
3
477
36
15
24
23
1.94
4207952--4207984
17
2.0
17
88
5
50
57
0
9
33
1.30
4213682--4213726
22
2.0
22
91
0
72
44
4
22
28
1.72
4219542--4219585
24
2.0
23
86
13
65
50
0
2
47
1.13
4219637--4219675
16
2.5
15
84
12
51
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4220193--4220235
22
2.0
21
86
8
61
53
6
4
34
1.49
4235074--4235122
15
3.1
15
76
23
55
67
0
0
32
0.91
4235073--4235120
18
2.9
17
77
22
57
68
0
0
31
0.90
4245100--4245140
21
2.0
21
85
9
57
73
2
0
24
0.96
4250167--4250213
16
2.7
17
77
12
51
55
0
2
42
1.12
4252451--4252724
46
6.0
46
95
0
449
39
14
23
22
1.91
4254212--4254389
47
3.8
48
84
3
191
36
26
13
23
1.92
4254219--4254389
94
1.8
94
83
2
227
36
26
13
23
1.92
4257649--4257686
20
2.0
20
89
5
60
57
2
0
39
1.12
4263481--4263551
20
3.4
21
77
13
67
33
0
8
57
1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344