genome.fa.s10.2.7.7.80.10.50.1000.321.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  321  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105075427--105075564	27	5.1	26	80	8	143	16	23	24	35	1.95
105075427--105075564	54	2.5	53	89	4	213	16	23	24	35	1.95
105075434--105075582	27	5.5	26	82	7	138	18	24	22	35	1.95
105079470--105079526	27	2.1	27	83	6	71	61	1	0	36	1.07
105080392--105080421	12	2.4	12	94	5	51	83	0	6	10	0.81
105080848--105080903	24	2.3	24	75	6	60	10	7	39	42	1.67
105083961--105084000	18	2.2	18	86	8	55	67	15	0	17	1.23
105084084--105084145	30	2.1	30	96	0	115	58	11	1	29	1.42
105084988--105085056	35	2.0	35	85	0	93	36	11	15	36	1.84
105086765--105086868	42	2.4	43	79	3	111	33	25	13	27	1.93
105089505--105089606	32	3.1	32	64	18	75	43	4	17	34	1.71
105091190--105091241	25	2.2	24	80	19	65	17	53	9	19	1.70
105091199--105091254	25	2.2	25	96	0	103	16	44	14	25	1.84
105091683--105091760	9	8.6	9	72	17	54	26	3	1	67	1.15
105091690--105091769	12	6.6	12	75	12	74	30	3	1	65	1.18
105102117--105102313	44	4.5	44	74	10	145	37	21	20	19	1.94
105102158--105102313	44	3.6	43	75	11	147	37	21	18	22	1.94
105102420--105102892	87	5.4	87	94	0	804	36	20	21	20	1.95
105102420--105103033	173	3.4	174	87	4	809	36	21	21	20	1.95
105102896--105102988	44	2.1	44	97	0	177	36	20	20	22	1.95
105102896--105103033	44	3.1	43	84	7	145	36	21	21	21	1.96
105103055--105103318	68	3.9	68	92	0	420	26	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105104153--105104235	3	27.3	3	73	20	59	30	3	1	65	1.17
105104157--105104239	18	4.4	18	81	13	87	31	3	1	63	1.19
105106187--105106251	28	2.3	28	79	12	80	63	0	1	35	1.04
105106205--105106259	28	2.0	28	85	7	76	58	1	1	38	1.20
105107400--105107504	21	4.8	21	74	22	99	58	0	4	36	1.26
105107398--105107517	48	2.7	43	79	15	127	57	0	5	35	1.29
105107802--105107871	33	2.1	33	84	10	90	67	0	4	28	1.10
105107816--105107849	12	2.8	12	81	0	50	70	0	0	29	0.87
105120100--105120160	26	2.3	26	78	21	65	39	4	1	54	1.32
105122931--105123093	81	2.0	81	100	0	326	31	9	13	44	1.76
105123340--105123390	27	1.9	26	84	11	68	41	1	15	41	1.58
105126654--105127305	80	8.3	80	80	11	520	30	9	12	47	1.73
105129312--105129339	14	2.0	14	100	0	56	14	7	0	78	0.95
105131927--105131975	22	2.3	20	76	13	53	26	2	10	61	1.39
105144224--105144265	20	2.2	20	86	4	59	52	2	2	42	1.27
105150572--105150677	37	2.8	38	77	16	105	50	0	13	34	1.47
105151043--105151159	19	6.9	17	68	25	54	57	2	4	35	1.32
105151358--105151393	3	12.0	3	87	0	54	66	0	2	30	1.06
105151494--105151561	3	22.3	3	73	8	57	61	7	0	30	1.23
105152021--105152056	11	3.2	12	88	11	58	47	0	52	0	1.00
105152162--105152212	27	1.9	26	84	4	66	23	0	5	70	1.09
105153119--105153667	44	12.6	44	74	11	368	25	22	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105153109--105153539	177	2.5	170	79	5	486	26	22	19	31	1.98
105153108--105153664	87	6.4	88	73	11	306	25	22	20	31	1.98
105165168--105165284	19	6.9	17	68	25	54	57	2	4	35	1.32
105165617--105165684	3	22.3	3	73	8	57	61	7	0	30	1.23
105166147--105166182	11	3.2	12	88	11	58	47	0	52	0	1.00
105166289--105166339	27	1.9	26	84	4	66	23	0	5	70	1.09
105169294--105169372	2	39.5	2	100	0	158	0	0	49	50	1.00
105171591--105171749	52	3.1	51	86	3	219	30	25	16	27	1.97
105173264--105173296	17	1.9	17	88	11	50	33	6	15	45	1.70
105198555--105198579	11	2.3	11	100	0	50	24	0	36	40	1.55
105199086--105199120	18	2.0	17	88	5	52	42	0	0	57	0.99
105202096--105202160	32	2.0	32	96	0	121	23	15	4	56	1.57
105202766--105202821	25	2.2	25	78	12	62	50	1	3	44	1.29
105209370--105209399	3	10.0	3	100	0	60	33	0	0	66	0.92
105209559--105209597	14	2.5	16	88	12	55	53	23	2	20	1.57
105220217--105220262	21	2.2	21	84	0	56	67	19	10	2	1.31
105222223--105222265	16	2.6	16	81	3	50	60	2	2	34	1.22
105236468--105236560	45	2.1	45	95	0	168	34	16	19	30	1.93
105238241--105238270	12	2.6	12	94	5	53	40	0	6	53	1.27
105238234--105238309	33	2.5	30	75	19	77	40	0	5	53	1.23
105238242--105238306	33	2.0	33	84	6	87	41	0	6	52	1.26
105238675--105238705	12	2.6	12	94	0	53	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105241257--105241288	10	3.2	10	100	0	64	81	0	0	18	0.70
105243625--105243832	43	4.8	43	75	8	163	25	19	17	37	1.94
105246007--105246039	13	2.6	13	90	4	50	48	12	0	39	1.40
105247900--105247958	15	3.8	15	78	12	66	6	15	0	77	0.96
105247900--105247954	10	5.2	11	75	14	53	7	16	0	76	1.00
105247904--105247959	16	3.5	16	80	7	69	5	14	0	80	0.88
105247902--105247970	32	2.2	32	81	5	77	11	14	1	72	1.19
105248063--105248106	22	2.0	22	82	8	54	31	13	0	54	1.39
105248812--105249119	130	2.4	130	84	4	383	27	14	20	37	1.92
105248744--105249134	129	3.0	128	78	7	400	28	15	18	37	1.92
105251675--105251728	25	2.2	25	93	0	90	40	3	16	38	1.66
105269343--105269399	22	2.7	21	81	5	69	38	28	14	19	1.90
105272438--105272490	27	2.0	27	100	0	106	33	0	24	41	1.55
105273033--105273199	45	3.7	45	79	4	156	44	15	19	20	1.86
105273033--105273153	47	2.6	45	84	5	136	47	14	17	21	1.82
105273285--105273349	32	2.0	32	100	0	130	41	9	9	40	1.69
105281122--105281154	3	11.0	3	100	0	66	66	0	0	33	0.92
105284104--105284148	17	2.7	16	80	10	54	57	2	4	35	1.31
105291906--105291972	34	2.0	34	93	0	116	37	5	14	41	1.71
105300665--105300773	45	2.4	45	86	3	148	43	18	17	21	1.89
105300751--105300775	12	2.1	12	100	0	50	40	20	24	16	1.91
105300980--105301065	40	2.2	40	82	0	100	38	15	11	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105301764--105301805	13	2.8	16	75	24	54	0	23	0	76	0.79
105302201--105302242	20	2.2	19	87	12	59	57	4	0	38	1.20
105302698--105302834	37	3.7	37	82	3	168	34	15	16	34	1.90
105305683--105305711	15	1.9	15	100	0	58	55	0	3	41	1.17
105307127--105307159	18	1.9	17	88	11	50	30	15	12	42	1.83
105307912--105308017	28	3.7	27	70	27	76	25	26	19	28	1.99
105307905--105308017	27	3.9	28	71	21	90	25	25	20	28	1.99
105307917--105308041	60	2.1	60	85	10	166	27	23	20	28	1.99
105308374--105308434	26	2.3	26	86	5	79	26	14	27	31	1.95
105310249--105310277	15	1.9	15	100	0	58	58	0	0	41	0.98
105312979--105313018	20	2.0	20	95	0	71	45	2	0	52	1.14
105313009--105313050	13	2.9	14	80	13	50	54	0	0	45	0.99
105313013--105313049	16	2.3	16	86	13	58	59	0	0	40	0.97
105313081--105313132	15	3.2	15	73	19	50	53	1	1	42	1.23
105315599--105315644	23	2.0	23	100	0	92	39	4	21	34	1.73
105317787--105317833	22	2.2	21	84	3	58	36	21	6	36	1.79
105317805--105317856	19	3.0	16	76	17	50	34	17	7	40	1.78
105317804--105317846	19	2.1	21	87	8	63	34	18	6	39	1.78
105320569--105320613	23	2.0	23	95	0	81	48	8	13	28	1.72
105330536--105330590	9	6.1	9	82	0	74	43	18	10	27	1.83
105330536--105330590	18	3.1	18	89	0	83	43	18	10	27	1.83
105330610--105330656	6	7.5	6	81	9	58	17	0	6	76	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105330681--105330724	13	3.6	13	82	17	58	9	2	47	40	1.48
105332867--105332902	18	2.1	18	89	5	56	13	47	27	11	1.77
105340199--105340271	29	2.6	29	95	2	130	49	16	6	27	1.71
105340310--105340350	9	4.6	9	88	11	66	43	19	9	26	1.82
105340369--105340409	6	6.5	6	83	10	55	17	0	4	78	0.93
105340438--105340472	18	1.9	18	88	0	52	8	2	45	42	1.49
105342069--105342102	18	1.9	18	88	5	52	55	2	2	38	1.30
105348240--105348291	16	3.3	15	78	7	59	57	0	25	17	1.40
105348247--105348292	15	3.0	15	78	6	56	58	0	26	15	1.37
105351932--105351981	25	2.0	25	96	0	91	20	14	8	58	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344