genome.fa.s10.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  116  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39401752--39401935	101	1.8	99	85	2	260	29	28	17	25	1.97
39407453--39407628	50	3.5	48	83	4	199	30	27	17	25	1.97
39407453--39407636	101	1.8	99	85	2	260	29	28	17	25	1.97
39413055--39413088	11	3.1	11	100	0	68	35	20	0	44	1.52
39428766--39428847	34	2.4	34	78	8	87	24	25	23	26	2.00
39436614--39436743	50	2.6	49	90	1	188	24	16	28	30	1.97
39439542--39439623	28	2.9	28	96	0	146	46	24	10	18	1.81
39446812--39446890	28	2.9	26	80	10	86	46	20	8	24	1.78
39446822--39446900	28	2.8	28	90	0	113	48	20	10	21	1.79
39452930--39452968	18	2.2	18	90	0	60	58	12	5	23	1.54
39452948--39453024	31	2.5	31	89	0	109	50	14	14	20	1.77
39452940--39453001	18	3.4	19	76	12	67	51	14	12	20	1.75
39453456--39453560	27	3.9	27	86	5	149	24	20	18	36	1.95
39453456--39453568	54	2.1	54	89	0	172	24	19	18	37	1.94
39453431--39453598	27	6.2	27	82	4	142	26	19	18	36	1.94
39453472--39453598	54	2.4	54	85	5	159	24	14	21	39	1.91
39453496--39453651	27	5.8	27	76	7	102	25	10	21	42	1.85
39453553--39453946	27	14.6	27	78	4	177	32	8	21	37	1.83
39453642--39453800	81	2.0	81	84	2	212	39	6	20	33	1.79
39453642--39453827	81	2.3	81	81	3	196	38	7	20	33	1.81
39463222--39463297	23	3.3	23	92	3	127	22	28	34	14	1.93
39468714--39468897	78	2.3	81	81	9	218	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39468714--39468897	40	4.7	40	82	8	216	25	22	27	24	2.00
39468767--39468922	78	2.0	78	81	8	183	26	21	26	25	1.99
39476630--39476814	79	2.3	81	81	7	209	24	21	27	25	1.99
39476633--39476814	40	4.6	40	82	6	201	25	20	28	25	1.99
39476683--39476847	79	2.1	79	80	6	183	26	20	27	26	1.99
39479584--39479688	53	2.0	53	96	0	192	34	12	18	35	1.88
39482057--39482234	27	6.6	27	82	3	196	27	15	27	29	1.96
39482058--39482208	82	1.9	81	88	4	232	27	15	27	29	1.96
39490211--39490388	27	6.6	27	82	3	196	27	15	27	29	1.96
39490212--39490362	82	1.9	81	88	4	232	27	15	27	29	1.96
39492934--39492963	15	1.9	16	93	6	53	53	6	20	20	1.67
39495825--39496344	47	11.1	47	92	0	799	32	9	30	28	1.88
39505134--39505175	21	2.0	21	85	0	57	21	16	42	19	1.89
39506414--39506572	49	3.2	50	85	6	200	30	27	17	25	1.97
39523187--39523371	79	2.3	81	83	7	227	24	22	27	24	2.00
39523188--39523371	40	4.6	40	82	9	207	25	22	27	24	2.00
39523240--39523394	79	2.0	79	83	7	199	26	21	27	25	1.99
39528330--39528570	49	4.9	49	83	3	302	29	26	18	25	1.98
39528330--39528570	100	2.4	99	85	2	322	29	26	18	25	1.98
39538802--39538946	53	2.7	53	82	2	155	20	24	18	36	1.95
39541266--39541416	29	5.2	29	82	6	180	38	15	25	21	1.92
39548168--39548338	93	1.8	93	91	0	279	22	22	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39548172--39548345	46	3.8	45	76	13	183	22	22	28	27	1.99
39554842--39554884	16	2.7	16	81	0	50	55	13	16	13	1.69
39555089--39555177	28	3.1	28	84	7	117	26	13	28	31	1.94
39557024--39557295	40	6.8	40	93	1	454	23	29	21	26	1.99
39557024--39557303	122	2.3	122	93	1	467	23	28	21	26	1.99
39563192--39563270	37	2.1	37	90	0	122	25	31	18	24	1.98
39563388--39563822	47	9.2	47	91	3	685	29	30	8	31	1.87
39563388--39563822	96	4.6	94	90	4	685	29	30	8	31	1.87
39563538--39563610	23	3.2	23	63	18	62	31	31	5	31	1.80
39563559--39563632	22	3.3	22	65	10	60	29	31	9	29	1.89
39566653--39566922	27	10.0	27	87	0	353	34	20	21	24	1.97
39567325--39567412	12	7.2	12	69	16	56	19	18	14	47	1.82
39567325--39567403	31	2.5	31	83	0	104	18	18	13	48	1.81
39567378--39567412	18	1.9	18	94	0	61	20	17	14	48	1.81
39569290--39569379	29	3.1	28	85	7	128	28	13	27	30	1.94
39570933--39571105	46	3.7	46	79	10	208	22	20	27	30	1.98
39570930--39571100	93	1.8	93	93	0	297	22	20	28	29	1.98
39574780--39574808	15	1.9	15	100	0	58	31	0	13	55	1.39
39575122--39575276	43	3.7	42	73	11	147	27	18	27	26	1.98
39592321--39592998	47	14.1	47	91	4	1007	33	9	29	28	1.88
39592314--39592998	145	4.8	144	88	5	964	33	9	29	28	1.88
39595100--39595173	29	2.6	29	89	4	105	25	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39595486--39595629	40	3.6	40	80	11	145	25	22	27	23	2.00
39595566--39595720	40	3.9	40	82	4	172	23	21	30	24	1.99
39595566--39595720	80	2.0	80	83	8	201	23	21	30	24	1.99
39599566--39600289	47	15.1	47	91	3	1133	32	9	29	28	1.88
39604069--39604144	40	1.9	40	84	10	102	23	14	27	34	1.94
39604171--39604241	28	2.5	28	79	0	79	29	8	29	32	1.87
39618723--39618872	39	3.8	39	93	1	248	29	28	22	20	1.98
39619205--39619417	103	2.0	103	92	6	354	23	21	8	46	1.78
39623908--39623956	26	1.9	25	83	4	62	34	24	14	26	1.94
39623993--39624059	20	3.3	20	91	0	107	32	11	22	32	1.90
39624110--39624227	23	5.1	23	92	3	193	27	20	21	30	1.98
39624442--39624505	31	2.1	31	90	0	101	35	15	23	25	1.94
39639296--39639470	27	6.4	27	82	3	181	28	14	26	30	1.95
39639297--39639452	82	1.9	81	86	3	224	28	15	26	29	1.96
39639293--39639470	82	2.2	81	81	3	214	28	15	25	30	1.96
39641133--39641281	47	3.2	47	83	4	167	30	28	16	23	1.96
39641162--39641281	47	2.6	45	86	5	168	30	26	16	25	1.97
39644232--39644328	48	2.0	48	100	0	194	41	10	20	27	1.85
39645895--39646111	40	5.5	40	90	2	314	22	28	24	24	1.99
39651692--39651896	27	7.6	27	86	3	250	30	27	14	26	1.95
39659701--39659905	27	7.6	27	86	3	250	30	27	14	26	1.95
39661795--39661862	29	2.3	29	85	5	93	27	30	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39661684--39662011	174	1.9	174	94	0	584	31	25	13	29	1.94
39661964--39662042	29	2.7	30	82	13	110	30	30	13	25	1.94
39671875--39671948	27	2.7	26	79	8	85	40	24	6	28	1.80
39671932--39672368	27	16.2	27	83	3	504	36	18	18	26	1.94
39672772--39672870	25	3.7	25	91	8	144	17	14	16	52	1.75
39672772--39672884	31	3.9	29	80	17	128	17	14	15	52	1.75
39672772--39672884	6	18.3	6	74	15	97	17	14	15	52	1.75
39672813--39672858	13	3.6	13	77	16	60	15	17	17	50	1.79
39676458--39676520	28	2.3	28	83	5	76	31	26	9	31	1.88
39676467--39676522	28	2.0	28	92	0	94	30	30	8	30	1.88
39677047--39677089	18	2.4	18	92	0	68	30	20	27	20	1.98
39681419--39681473	24	2.3	23	82	14	67	29	36	16	18	1.92
39687534--39687565	16	2.0	16	100	0	64	43	18	25	12	1.85
39687785--39687878	28	3.3	29	82	7	104	24	13	32	28	1.94
39689521--39689704	77	2.4	77	94	0	314	20	19	28	31	1.97
39689528--39689729	77	2.6	77	89	0	305	20	18	29	32	1.96
39691675--39691859	79	2.3	81	83	7	218	25	28	22	24	1.99
39691675--39691859	40	4.6	41	80	9	195	25	28	22	24	1.99
39699684--39699868	79	2.3	81	81	7	218	25	27	22	24	2.00
39699684--39699868	40	4.7	40	82	7	216	25	27	22	24	2.00
39709830--39710028	43	4.6	43	83	5	258	30	29	16	24	1.96
39717130--39717260	65	2.0	65	93	0	226	25	14	16	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39729875--39730003	46	2.8	46	95	0	222	19	21	29	29	1.98
39736016--39736084	21	3.3	21	100	0	138	40	17	28	13	1.87
39736983--39737158	46	3.8	46	79	12	216	20	21	29	28	1.98
39736980--39737151	93	1.8	93	96	0	317	20	21	29	27	1.98
39739647--39739689	21	2.0	21	100	0	86	27	23	23	25	2.00
39751003--39751042	18	2.4	17	88	12	57	75	2	17	5	1.10
39752982--39753069	27	3.3	27	73	13	83	30	13	15	39	1.87
39752996--39753152	54	2.9	54	81	8	162	33	12	17	36	1.87
39752996--39753152	27	5.9	27	76	10	128	33	12	17	36	1.87
39753343--39753375	17	1.9	17	88	11	50	18	45	24	12	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344