Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  319  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104672202--104672252
21
2.4
20
75
18
50
45
29
0
25
1.54
104673236--104673489
115
2.2
116
81
5
286
31
20
16
31
1.94
104674784--104674891
26
4.2
26
92
0
180
33
7
23
36
1.83
104681829--104681934
26
4.1
26
93
0
167
34
7
21
35
1.82
104685640--104685668
14
2.0
15
93
6
51
34
6
20
37
1.80
104687022--104687053
13
2.5
13
94
0
55
34
18
15
31
1.93
104688142--104688285
60
2.4
59
80
8
157
27
25
20
27
1.99
104691987--104692070
40
2.1
40
81
0
96
34
16
23
25
1.95
104692937--104693024
14
6.3
14
72
5
52
47
20
2
29
1.62
104692937--104692997
21
2.9
21
75
7
70
47
19
1
31
1.59
104692936--104693068
21
6.0
21
69
11
63
46
21
2
29
1.63
104693125--104693182
21
2.7
21
89
2
80
51
25
0
22
1.48
104693537--104693568
3
10.7
3
100
0
64
68
0
0
31
0.90
104693668--104694026
188
1.9
187
84
5
483
35
19
16
28
1.94
104696791--104696826
2
18.0
2
88
0
54
50
0
0
50
1.00
104697663--104697739
22
3.8
19
73
20
68
44
0
5
50
1.24
104697663--104697709
22
2.1
23
96
4
87
42
0
8
48
1.33
104697705--104697771
29
2.3
29
87
7
91
46
0
0
53
1.00
104698041--104698333
9
33.7
9
83
7
329
44
22
0
33
1.53
104708454--104708509
3
18.7
3
88
0
85
67
5
0
26
1.11
104708576--104708618
3
14.3
3
85
0
50
62
0
4
32
1.15
104709250--104710029
177
4.4
177
93
0
1229
27
22
18
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104709686--104709927
44
5.5
44
65
20
112
27
22
19
30
1.98
104713470--104713692
79
2.8
78
82
9
265
24
27
22
25
2.00
104713470--104713692
39
5.7
40
86
8
266
24
27
22
25
2.00
104718866--104718913
25
1.9
25
91
0
78
35
25
12
27
1.92
104718952--104719008
9
5.9
9
73
15
51
35
8
21
35
1.84
104718950--104719012
20
3.2
20
95
0
117
36
12
19
31
1.89
104718950--104719020
20
3.5
20
92
0
115
35
14
19
30
1.91
104719066--104719207
24
6.0
24
91
5
227
28
21
21
27
1.99
104719067--104719186
23
5.1
23
95
3
213
29
21
20
28
1.98
104719067--104719207
47
3.0
47
94
3
239
28
21
21
27
1.99
104719400--104719463
31
2.1
31
87
0
92
35
14
23
26
1.93
104723568--104723620
21
2.5
21
84
0
79
32
24
26
16
1.97
104723579--104723628
21
2.3
21
93
6
82
34
28
26
12
1.92
104723554--104723640
21
4.0
23
76
10
74
36
25
21
16
1.94
104725079--104725114
15
2.3
17
81
18
51
0
30
0
69
0.89
104730763--104730809
22
2.2
22
88
3
69
38
6
8
46
1.60
104734619--104734653
17
2.1
17
89
10
54
37
5
0
57
1.23
104739230--104739611
52
7.7
52
83
10
512
34
14
22
28
1.94
104739256--104739735
46
10.2
46
82
11
555
35
14
21
28
1.93
104739231--104739643
98
4.2
98
95
0
727
34
15
22
28
1.94
104739231--104739731
196
2.6
196
91
5
789
34
14
22
28
1.93
104739618--104739846
37
6.0
37
84
9
300
37
15
21
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104739571--104739848
83
3.5
83
87
6
398
36
15
21
26
1.93
104741114--104741147
4
8.0
4
90
9
50
23
0
2
73
0.97
104741097--104741156
22
2.7
22
73
19
61
26
0
6
66
1.16
104744940--104744972
4
8.0
4
96
3
57
24
0
3
72
0.98
104745919--104746138
49
4.1
56
82
15
288
23
13
30
32
1.93
104745939--104746029
28
3.2
28
66
22
80
25
15
31
27
1.95
104745980--104746171
49
3.9
49
95
0
321
23
14
30
31
1.95
104749292--104749673
52
7.7
52
83
10
512
34
14
22
28
1.94
104749318--104749797
46
10.2
46
82
11
555
35
14
21
28
1.93
104749293--104749705
98
4.2
98
95
0
727
34
15
22
28
1.94
104749293--104749793
196
2.6
196
91
5
789
34
14
22
28
1.93
104749680--104749908
37
6.0
37
84
9
300
37
15
21
25
1.93
104749633--104749910
83
3.5
83
87
6
398
36
15
21
26
1.93
104753048--104753156
54
2.0
54
100
0
218
50
18
3
27
1.63
104755406--104755438
13
2.6
13
90
4
50
48
12
0
39
1.40
104758335--104758400
5
13.0
5
77
17
50
77
0
3
19
0.90
104758356--104758414
6
9.5
6
83
7
73
81
0
3
15
0.82
104758335--104758414
12
7.0
11
75
17
67
77
0
3
18
0.92
104758335--104758414
26
2.9
26
82
14
90
77
0
3
18
0.92
104759845--104759877
13
2.6
13
90
4
50
48
12
0
39
1.40
104769998--104770065
27
2.5
26
75
15
68
55
4
8
30
1.50
104770424--104770474
3
17.0
3
76
15
52
64
1
0
33
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104770424--104770474
15
3.4
15
89
5
68
64
1
0
33
1.05
104771072--104771108
18
2.0
20
84
10
51
18
0
13
67
1.23
104772573--104772606
13
2.5
13
90
4
50
58
8
11
20
1.59
104772660--104772694
14
2.5
14
90
0
52
54
2
22
20
1.58
104772542--104772835
88
3.4
87
80
5
317
35
20
17
26
1.95
104772800--104772999
56
3.8
53
83
11
245
36
18
15
30
1.92
104773016--104773154
71
2.0
71
91
0
224
30
23
17
28
1.97
104795360--104795396
18
2.0
20
84
10
51
18
0
13
67
1.23
104798160--104798247
37
2.4
37
84
0
104
25
21
25
28
1.99
104798301--104798371
22
3.2
22
80
11
83
30
21
14
33
1.92
104800169--104800266
40
2.5
40
94
0
169
41
1
20
36
1.59
104800198--104800322
40
3.1
39
80
6
117
45
2
19
32
1.63
104800190--104800334
67
2.2
67
87
2
202
44
2
19
33
1.65
104800178--104800335
27
5.9
27
73
14
105
43
3
18
34
1.66
104806227--104806278
27
1.9
27
100
0
104
23
26
28
21
1.99
104813998--104814914
88
10.4
88
92
1
1428
25
23
22
29
1.99
104813998--104814914
177
5.2
176
94
1
1446
25
23
22
29
1.99
104814067--104814914
265
3.2
265
95
0
1486
25
23
22
29
1.99
104817069--104817098
8
3.6
8
95
4
51
13
0
13
73
1.10
104819677--104819725
19
2.5
20
80
6
57
42
12
18
26
1.85
104825490--104825617
33
4.0
31
77
8
114
48
0
6
44
1.33
104825490--104825617
64
2.0
63
84
6
168
48
0
6
44
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104829472--104829511
21
2.0
20
90
5
62
62
5
5
27
1.37
104834809--104834850
20
2.1
21
86
8
61
23
2
0
73
0.94
104839701--104839738
17
2.1
19
90
9
62
65
5
2
26
1.27
104840082--104840120
9
4.4
9
83
6
53
35
0
0
64
0.94
104840090--104840129
18
2.3
18
91
4
64
35
0
0
65
0.93
104840081--104840132
20
2.7
19
77
17
63
32
0
0
67
0.91
104850078--104850142
21
3.2
20
70
12
62
12
26
20
41
1.87
104850060--104850148
39
2.3
39
94
0
160
13
24
22
39
1.90
104859115--104859179
21
3.2
20
70
12
62
12
26
20
41
1.87
104859097--104859185
39
2.3
39
94
0
160
13
24
22
39
1.90
104860408--104860450
18
2.3
18
92
8
68
67
27
0
4
1.10
104860875--104860924
22
2.3
22
82
0
55
0
42
0
58
0.98
104861434--104861465
15
2.0
17
88
11
50
31
0
6
62
1.20
104863992--104864041
24
2.1
24
85
7
66
22
22
14
42
1.88
104871099--104871132
17
1.9
18
88
5
52
44
29
20
5
1.75
104871579--104872207
166
3.9
165
87
8
821
30
17
20
30
1.96
104871912--104872838
72
12.6
73
88
3
1159
31
16
19
32
1.95
104871913--104872838
367
2.5
367
95
1
1633
31
16
19
32
1.95
104873596--104873658
17
4.0
16
72
17
60
73
19
3
4
1.15
104873598--104873654
30
1.9
30
92
7
98
77
15
3
3
1.05
104874083--104874132
22
2.3
22
82
0
55
0
42
0
58
0.98
104874642--104874673
15
2.0
17
88
11
50
31
0
6
62
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104874702--104874773
19
3.6
20
72
18
60
33
6
4
55
1.46
104874761--104874785
13
1.9
13
100
0
50
32
8
0
60
1.26
104879142--104879182
21
2.0
21
85
9
57
58
9
9
21
1.59
104879808--104879866
30
2.1
27
84
9
73
62
5
6
25
1.41
104879819--104879901
26
3.1
27
79
14
84
61
2
3
32
1.26
104879850--104879959
22
5.4
22
70
21
80
59
0
5
35
1.21
104879845--104879972
39
3.2
39
70
18
104
60
0
4
33
1.23
104879930--104879972
17
2.4
18
84
7
52
62
0
2
34
1.08
104879908--104879972
20
3.5
19
78
14
64
63
0
4
32
1.15
104879967--104880012
23
1.9
25
83
16
62
56
6
0
36
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344