genome.fa.s10.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  118  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40039958--40040112	79	2.0	79	82	7	190	26	20	27	25	1.99
40043049--40043088	19	2.2	17	86	8	53	45	0	0	55	0.99
40046444--40046481	18	2.1	19	85	5	51	55	2	0	42	1.14
40046937--40047103	90	1.9	90	88	0	253	34	12	17	35	1.87
40053306--40053438	43	3.1	42	76	8	144	27	15	25	32	1.95
40055611--40055735	29	4.3	29	83	5	164	27	14	28	29	1.95
40060254--40060335	38	2.2	38	88	0	119	24	23	21	30	1.99
40061913--40062026	24	5.2	24	60	20	68	10	25	34	29	1.89
40061860--40062110	43	5.9	43	92	0	387	11	22	33	31	1.90
40062276--40062386	57	1.9	58	87	1	161	24	19	28	27	1.99
40066072--40066153	38	2.2	38	88	0	119	24	23	21	30	1.99
40068244--40068339	42	2.3	42	92	0	156	14	21	37	26	1.92
40070913--40071017	28	3.8	28	86	3	140	27	14	31	26	1.95
40070910--40071017	56	1.9	56	88	3	164	28	13	30	26	1.94
40078463--40078497	16	2.2	16	89	0	52	60	14	14	11	1.60
40078708--40078823	28	4.1	28	80	6	128	29	12	27	30	1.93
40078709--40078817	56	1.9	56	87	3	157	28	13	29	28	1.94
40081498--40081705	67	3.2	64	75	16	169	32	17	28	22	1.96
40097222--40097257	18	2.1	18	89	5	56	47	0	8	44	1.33
40100514--40100770	40	6.4	40	80	4	297	23	20	28	28	1.99
40100514--40100770	80	3.2	80	89	2	376	23	20	28	28	1.99
40102498--40102686	96	2.0	96	93	0	324	33	19	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40104402--40104548	43	3.5	43	75	14	144	28	14	26	30	1.95
40107144--40107485	24	14.0	24	90	2	479	27	20	21	30	1.98
40107534--40107594	20	3.0	20	85	0	86	34	21	11	32	1.89
40107637--40107684	25	1.9	25	86	0	69	25	16	25	33	1.96
40108846--40108910	27	2.4	27	82	5	78	21	24	18	35	1.96
40108941--40109150	27	7.7	27	75	7	140	31	10	19	39	1.85
40109182--40109354	27	6.4	27	82	5	215	42	8	20	28	1.81
40109182--40109354	81	2.1	81	89	2	267	42	8	20	28	1.81
40112303--40112595	24	12.0	24	91	1	433	27	19	22	31	1.98
40112644--40112704	20	3.0	20	90	0	104	34	21	11	32	1.89
40112747--40112794	25	1.9	25	91	0	78	25	14	25	35	1.94
40113957--40114021	27	2.4	26	80	10	69	23	24	16	35	1.95
40114139--40114294	27	5.8	27	76	6	138	29	8	19	41	1.82
40114135--40114294	81	2.0	81	83	4	207	30	9	19	41	1.83
40114293--40114457	27	6.1	27	80	5	181	43	6	18	31	1.76
40114297--40114457	81	2.0	81	86	7	229	42	6	19	31	1.76
40118240--40118427	49	3.8	49	82	2	250	28	26	19	26	1.99
40118245--40118428	100	1.8	100	97	0	350	28	27	19	25	1.99
40122061--40122098	19	2.0	20	84	5	51	57	21	2	18	1.52
40122965--40123002	18	2.1	18	85	9	51	23	39	23	13	1.90
40126430--40126483	27	2.0	27	89	3	83	48	12	11	27	1.76
40127528--40127568	21	2.0	21	85	9	57	65	0	29	4	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40127533--40127565	15	2.1	16	88	5	50	66	0	30	3	1.06
40129879--40129919	19	2.2	18	86	4	55	17	26	29	26	1.97
40135000--40135072	15	4.9	15	82	0	92	56	13	17	12	1.68
40136330--40136722	206	1.9	209	96	1	738	41	9	17	31	1.82
40154071--40154155	27	3.1	27	91	0	143	40	20	18	21	1.92
40154528--40154595	34	2.0	34	85	5	93	29	23	20	26	1.99
40156461--40156500	17	2.2	17	86	8	53	45	0	17	37	1.49
40160285--40160393	29	3.9	28	75	5	103	26	14	29	29	1.95
40165130--40165215	28	3.0	28	79	3	109	25	27	13	32	1.94
40166697--40166728	16	2.0	16	93	0	55	18	3	25	53	1.59
40169599--40169773	46	3.8	45	75	11	158	29	28	20	21	1.98
40169606--40169777	93	1.8	93	91	0	281	29	28	20	21	1.98
40175907--40175939	2	16.5	2	93	0	57	51	45	0	3	1.16
40179333--40179434	29	3.6	29	80	6	109	30	27	14	27	1.95
40185014--40185047	18	1.9	18	88	5	52	29	8	20	41	1.82
40186109--40186224	29	4.1	28	76	8	108	28	28	15	27	1.96
40186100--40186210	58	1.9	58	83	1	143	27	28	16	27	1.97
40186282--40186315	18	1.9	18	88	5	52	20	38	23	17	1.93
40190557--40190745	40	4.8	40	83	5	224	25	31	20	23	1.98
40196260--40196346	27	3.2	27	90	6	133	32	22	25	19	1.98
40199057--40199146	24	3.7	24	76	2	81	28	15	26	28	1.96
40210687--40210743	30	1.9	30	88	0	87	43	8	22	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40211164--40211339	46	3.8	46	76	12	189	21	21	28	28	1.98
40211160--40211332	93	1.9	93	92	0	292	21	21	29	27	1.98
40214276--40214344	15	4.6	15	83	0	84	14	17	11	56	1.67
40214267--40214346	30	2.7	30	80	7	99	13	17	13	55	1.70
40216740--40216878	46	2.9	49	78	14	166	23	20	27	28	1.99
40231917--40232088	93	1.8	93	92	0	290	29	29	20	21	1.98
40231910--40232085	46	3.8	46	78	12	189	30	28	19	21	1.98
40231961--40232104	46	3.1	44	75	15	132	29	28	19	22	1.98
40235025--40235066	20	2.1	20	95	0	75	38	21	7	33	1.81
40241703--40241727	13	1.9	13	100	0	50	32	32	0	36	1.58
40248109--40248207	24	4.1	24	93	0	171	32	5	41	21	1.75
40249603--40249713	27	4.2	26	85	5	123	18	23	20	37	1.94
40260911--40261054	67	2.2	64	81	9	166	25	29	15	29	1.96
40261518--40261578	30	2.0	30	84	6	79	31	21	4	42	1.74
40262956--40263098	42	3.3	42	82	5	144	32	26	14	25	1.95
40270498--40270642	42	3.4	42	81	7	157	33	24	16	24	1.96
40270521--40270645	44	2.9	44	82	8	150	32	28	16	23	1.96
40274695--40274798	27	3.9	27	82	1	120	39	20	16	24	1.92
40281421--40281483	29	2.3	28	81	13	69	42	11	25	20	1.85
40284626--40284713	6	14.3	6	71	21	67	50	15	14	19	1.79
40284635--40284713	31	2.5	31	95	0	140	50	15	15	18	1.78
40285072--40285134	27	2.3	28	75	8	67	38	26	17	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40285116--40285356	27	9.0	27	87	1	288	25	21	17	35	1.95
40285116--40285363	54	4.6	54	85	3	322	25	20	17	35	1.95
40285115--40285363	81	3.1	81	87	2	342	25	20	18	35	1.95
40285347--40285446	27	3.7	27	73	5	94	33	9	21	37	1.84
40285395--40285687	27	10.9	26	82	5	176	31	8	20	39	1.83
40285395--40285687	81	3.6	79	81	6	232	31	8	20	39	1.83
40285466--40285687	27	8.3	27	88	1	302	31	8	20	40	1.81
40299830--40299924	28	3.4	28	81	5	104	40	16	18	24	1.91
40307880--40307947	28	2.5	27	90	9	111	36	19	19	25	1.94
40308255--40308319	33	2.0	33	84	0	85	23	23	24	29	1.99
40309811--40309846	16	2.2	16	95	0	63	58	16	16	8	1.61
40310063--40310123	29	2.1	29	84	3	79	31	16	26	26	1.96
40311895--40312011	29	4.1	29	91	1	182	24	14	31	29	1.95
40317028--40317080	29	1.9	27	85	11	72	43	3	20	32	1.70
40317582--40317685	42	2.4	43	83	1	147	25	17	25	31	1.97
40319969--40320104	44	3.1	43	71	12	107	33	24	16	26	1.96
40321186--40321225	13	3.1	13	100	0	80	47	22	0	30	1.52
40328609--40328641	15	2.3	15	89	5	50	63	3	12	21	1.41
40336076--40336216	40	3.5	40	86	6	178	29	26	19	24	1.99
40337175--40337209	15	2.3	15	95	0	61	31	20	5	42	1.75
40340890--40340967	39	2.0	39	100	0	156	28	30	5	35	1.79
40344248--40344394	40	3.7	39	86	7	170	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40344238--40344404	40	4.2	39	86	3	163	29	25	19	25	1.99
40359039--40359226	100	1.9	100	96	0	349	28	25	20	25	1.99
40359047--40359229	49	3.7	49	83	2	240	28	26	19	25	1.98
40363396--40363477	30	2.7	30	73	0	83	28	17	26	28	1.97
40363395--40363492	30	3.3	30	71	5	81	30	16	25	27	1.96
40368430--40368616	49	3.8	49	83	6	252	28	26	19	26	1.99
40368435--40368630	99	2.0	101	94	3	351	28	27	19	25	1.99
40380742--40380792	16	3.2	16	86	5	59	47	27	1	23	1.63
40380766--40380798	16	2.1	16	100	0	66	36	24	6	33	1.80
40382147--40382235	29	3.1	29	85	3	110	25	17	29	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344