genome.fa.s10.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  106  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35702596--35702665	22	3.3	22	76	11	83	48	25	1	24	1.59
35703097--35703142	19	2.4	19	92	7	76	47	2	2	47	1.26
35703439--35703517	42	1.9	42	84	2	106	53	6	5	35	1.48
35707068--35707100	6	5.5	6	96	0	57	87	0	12	0	0.53
35709965--35710012	19	2.5	19	79	3	51	60	4	22	12	1.49
35710283--35710692	200	2.0	201	95	1	734	30	18	22	27	1.97
35720498--35720542	23	1.9	24	86	13	67	51	11	11	26	1.71
35722880--35722917	20	1.9	20	88	0	58	18	13	31	36	1.89
35727153--35727212	21	2.9	21	97	2	113	18	25	41	15	1.89
35728447--35728854	48	8.5	48	85	0	503	27	26	16	29	1.97
35728433--35728854	96	4.4	96	88	0	585	26	26	17	29	1.97
35728433--35728854	191	2.2	192	88	0	612	26	26	17	29	1.97
35730201--35730327	57	2.2	57	98	0	245	24	11	21	43	1.85
35734375--35734552	27	6.6	27	83	3	178	29	28	15	26	1.96
35734401--35734551	82	1.9	81	88	4	232	29	27	15	27	1.96
35735035--35735060	12	2.2	12	100	0	52	42	0	7	50	1.31
35744247--35744392	50	2.9	49	76	13	154	27	27	15	30	1.96
35745666--35745700	18	2.0	18	88	5	54	28	14	20	37	1.91
35746755--35746842	28	3.1	29	73	12	92	22	27	15	34	1.95
35746731--35746842	57	2.0	57	85	7	156	21	30	17	30	1.96
35754214--35754245	15	2.0	17	88	11	50	25	21	18	34	1.96
35757467--35757498	16	2.0	16	93	0	55	50	34	6	9	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35761436--35761492	30	1.9	30	82	13	73	28	5	14	52	1.62
35762502--35762555	26	2.1	25	86	3	72	25	14	14	44	1.84
35763769--35763894	24	5.3	24	80	5	103	20	23	17	38	1.93
35763769--35763869	24	4.2	24	85	6	107	18	24	16	39	1.91
35763769--35763894	47	2.6	47	74	6	119	20	23	17	38	1.93
35765293--35765386	29	3.3	29	81	11	113	28	27	15	27	1.97
35767000--35767062	30	2.1	30	87	0	90	25	4	15	53	1.61
35767186--35767218	11	2.9	12	86	13	52	66	0	0	33	0.92
35769216--35769340	29	4.4	29	84	3	164	24	12	31	32	1.92
35769216--35769333	57	2.1	57	85	3	157	24	12	31	31	1.93
35777724--35777757	13	2.6	13	100	0	68	41	11	8	38	1.73
35780763--35780984	79	2.8	80	83	6	281	25	20	27	26	1.99
35780763--35780970	40	5.2	40	82	7	244	25	21	27	25	1.99
35802785--35802819	13	2.7	13	95	0	61	20	22	45	11	1.82
35806043--35806070	14	2.0	14	100	0	56	21	0	28	50	1.49
35806217--35806250	15	2.3	15	89	0	50	14	0	38	47	1.45
35806106--35806257	7	21.3	7	78	6	81	21	0	37	40	1.54
35810144--35810290	43	3.4	43	86	0	206	24	17	29	28	1.97
35817874--35818205	40	8.3	40	87	2	411	27	28	20	23	1.99
35817894--35818205	120	2.6	120	93	1	509	26	28	20	24	1.99
35823956--35824287	40	8.3	40	88	2	420	27	28	20	23	1.99
35823976--35824287	120	2.6	120	93	1	518	26	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35825163--35825290	29	4.5	28	86	2	166	32	25	12	29	1.92
35825162--35825290	57	2.3	57	89	2	197	32	25	12	29	1.92
35831577--35831740	40	4.1	40	87	3	188	21	25	28	24	1.99
35834139--35834341	47	4.3	47	92	0	325	34	8	29	27	1.86
35836767--35836841	38	2.0	38	86	5	107	30	18	26	24	1.98
35836899--35836963	23	3.1	23	62	25	61	24	26	29	20	1.99
35836895--35837200	40	7.7	40	92	1	483	24	22	29	24	1.99
35840573--35840822	47	5.3	47	92	0	383	34	8	30	27	1.86
35847534--35847572	14	2.8	14	88	11	62	56	7	5	30	1.49
35847898--35847940	23	1.9	23	95	4	79	65	2	0	32	1.06
35848118--35848177	22	2.8	22	85	5	70	50	0	0	50	1.00
35852723--35852767	11	4.1	11	78	21	58	46	0	0	53	1.00
35852717--35852757	11	3.2	13	80	20	50	46	0	0	53	1.00
35852735--35852786	22	2.4	22	83	6	61	53	0	0	46	1.00
35853625--35853658	13	2.6	13	85	0	50	32	29	26	11	1.92
35856746--35856966	40	5.5	40	82	7	252	26	25	22	24	2.00
35856761--35856966	83	2.5	80	83	5	254	27	26	22	23	2.00
35858002--35858036	16	2.2	16	100	0	70	45	5	17	31	1.71
35863357--35863402	17	2.8	18	84	15	64	28	41	30	0	1.56
35870533--35870571	20	2.0	20	100	0	78	20	25	23	30	1.98
35876876--35877035	74	2.2	74	91	0	257	25	30	23	20	1.98
35877280--35877322	20	2.2	20	100	0	86	13	25	20	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878181--35878301	46	2.6	46	85	5	154	24	28	17	28	1.97
35881418--35881588	63	2.7	63	81	0	171	26	17	25	30	1.97
35882965--35882995	16	1.9	16	93	0	53	35	22	0	41	1.54
35882962--35883001	20	2.0	20	85	0	53	37	22	0	40	1.54
35883187--35883441	55	4.8	54	77	7	229	21	25	16	36	1.94
35898547--35898679	69	1.9	70	90	1	214	32	14	16	36	1.89
35900476--35900552	38	2.0	38	97	0	145	36	7	27	28	1.85
35900514--35900687	48	3.6	48	89	3	258	34	8	28	29	1.86
35900823--35900920	37	2.6	37	91	3	153	28	18	27	25	1.98
35900834--35900942	37	2.9	37	87	2	121	26	18	27	27	1.98
35902206--35902437	40	5.8	40	89	2	353	21	20	30	27	1.98
35904730--35904862	69	1.9	70	90	1	214	32	14	16	36	1.89
35906655--35906728	36	2.0	37	92	7	125	36	8	25	29	1.85
35906638--35906805	45	4.0	42	77	18	181	36	5	25	32	1.79
35906638--35906822	41	4.4	43	75	18	176	36	5	25	32	1.79
35924041--35924264	40	5.6	40	83	5	263	25	22	25	25	2.00
35924041--35924264	83	2.8	80	85	8	276	25	22	25	25	2.00
35932011--35932218	40	5.1	40	85	3	263	23	22	27	26	1.99
35932015--35932218	83	2.5	80	86	5	259	23	22	27	26	1.99
35934875--35934906	16	2.0	16	100	0	64	43	18	18	18	1.88
35951973--35952046	25	3.0	25	73	15	80	33	25	12	28	1.92
35954818--35954868	25	2.0	25	100	0	102	39	19	15	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35956968--35957070	40	2.6	40	85	3	154	22	16	28	33	1.95
35957036--35957135	41	2.4	41	76	0	101	29	15	25	31	1.95
35962743--35962824	6	13.3	6	73	19	71	47	15	18	18	1.83
35962743--35962824	19	4.4	18	74	19	71	47	15	18	18	1.83
35962757--35962824	25	2.7	25	90	0	109	47	16	19	17	1.83
35965525--35965826	47	6.4	47	93	0	442	34	8	29	27	1.86
35968251--35968324	37	2.0	38	86	7	107	31	18	25	24	1.98
35968378--35968639	40	6.6	40	88	1	377	24	22	27	25	1.99
35968378--35968639	79	3.3	80	91	2	404	24	22	27	25	1.99
35968382--35968655	119	2.3	119	88	2	399	24	22	27	25	2.00
35972004--35972307	47	6.4	47	91	1	437	34	8	29	27	1.86
35974608--35975000	27	14.6	27	88	0	525	26	20	17	34	1.95
35974608--35975245	54	11.6	54	86	3	808	25	21	18	34	1.96
35974608--35975245	81	7.8	81	84	4	810	25	21	18	34	1.96
35974963--35975037	37	2.0	37	97	0	141	24	24	14	37	1.93
35975000--35975245	27	9.1	27	89	0	366	23	21	19	35	1.96
35975295--35975414	27	4.4	27	83	6	100	35	9	15	40	1.80
35977369--35977617	40	6.3	38	78	6	221	25	28	21	23	1.99
35977369--35977617	79	3.1	77	77	9	241	25	28	21	23	1.99
35977334--35977591	119	2.2	119	97	0	491	25	29	21	24	1.99
36000530--36000554	13	1.9	13	100	0	50	32	16	16	36	1.90
36002431--36002509	25	3.3	25	69	16	85	35	3	29	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36002406--36002559	47	3.3	47	93	0	272	33	7	29	29	1.84
36030700--36030793	47	2.0	47	100	0	188	38	27	6	27	1.81
36044016--36044300	51	5.7	51	83	5	357	25	20	25	28	1.99
36044009--36044243	100	2.3	101	90	2	366	26	20	26	26	1.99
36044014--36044300	100	2.9	100	86	4	348	25	20	25	27	1.99
36044016--36044300	151	1.9	151	96	0	525	25	20	25	28	1.99
36047369--36047575	53	3.8	54	78	3	202	38	19	22	19	1.94
36055350--36055417	30	2.2	30	87	7	93	57	11	5	25	1.56
36055992--36056123	55	2.4	54	83	1	165	37	20	22	19	1.95
36056082--36056196	53	2.2	52	80	3	122	43	15	23	17	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344