Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  291  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97303218--97303270
18
2.9
18
77
5
54
24
1
1
71
1.06
97303357--97303445
24
3.7
24
69
21
60
37
1
5
56
1.30
97303307--97303416
37
3.2
35
79
10
127
34
1
2
60
1.21
97303583--97303629
21
2.4
19
82
10
58
70
0
8
21
1.14
97303681--97303707
14
1.9
14
100
0
54
55
0
0
44
0.99
97303681--97303822
36
4.0
35
76
10
139
55
3
0
40
1.22
97303784--97303840
22
2.5
22
80
8
62
59
1
0
38
1.08
97303866--97303937
9
7.9
9
76
7
74
80
2
4
12
0.96
97303866--97303939
34
2.2
34
81
15
84
79
2
5
12
1.00
97303872--97303937
17
3.7
18
82
8
73
81
3
4
10
0.94
97304737--97304785
21
2.4
21
79
3
55
34
6
26
32
1.81
97312558--97312832
133
2.1
133
98
0
532
37
12
4
45
1.62
97316322--97316362
19
2.2
19
95
0
73
58
17
4
19
1.56
97318107--97318143
3
12.3
3
100
0
74
67
0
0
32
0.91
97318540--97318625
43
2.0
44
90
6
140
31
4
11
52
1.58
97319291--97319389
50
2.0
50
93
0
171
30
12
26
31
1.92
97325188--97325331
46
3.1
45
71
11
112
30
29
19
20
1.97
97329193--97329241
21
2.4
21
89
3
73
40
6
30
22
1.78
97337790--97337820
8
3.9
8
91
0
53
45
25
25
3
1.69
97338209--97338340
27
4.9
26
81
10
142
20
24
21
34
1.97
97338206--97338314
54
2.0
54
94
1
193
19
24
22
33
1.97
97344247--97344322
36
2.1
36
100
0
152
42
15
5
36
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97345583--97345626
23
1.9
23
86
9
63
52
4
0
43
1.22
97345880--97345921
20
2.1
20
86
0
57
33
19
0
47
1.49
97347311--97347387
10
7.7
10
73
11
68
57
11
22
9
1.62
97347311--97347392
30
2.7
30
79
3
94
56
12
23
8
1.63
97351733--97352027
92
3.2
92
81
0
358
32
18
20
28
1.96
97354697--97354766
28
2.5
28
85
0
95
31
12
2
52
1.54
97356414--97356488
30
2.6
28
83
12
82
65
4
2
28
1.24
97356432--97356477
10
4.6
10
78
10
58
67
2
2
28
1.14
97356432--97356490
17
3.7
17
80
15
81
66
3
1
28
1.18
97356390--97356488
9
11.1
9
66
27
52
64
4
3
28
1.26
97356806--97356851
12
3.8
12
82
2
56
71
0
2
26
0.97
97357838--97357885
7
6.7
7
87
2
51
12
0
6
81
0.87
97357851--97357876
7
3.7
7
100
0
52
0
0
11
88
0.52
97358156--97358637
44
11.0
44
82
4
528
29
26
14
29
1.96
97370529--97370574
16
2.9
15
84
9
56
63
4
4
28
1.33
97370534--97370574
15
2.6
16
88
7
57
60
4
4
29
1.38
97370695--97370733
17
2.4
16
83
8
51
56
2
2
38
1.27
97371937--97371980
14
3.1
14
76
3
52
15
0
4
79
0.89
97376474--97376526
24
2.2
24
86
0
70
37
3
7
50
1.49
97377190--97377259
28
2.5
28
83
0
77
22
15
5
55
1.61
97379970--97380174
90
2.3
90
84
0
248
25
25
15
33
1.95
97380053--97380245
90
2.1
90
86
1
262
27
26
15
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97380978--97381021
23
2.0
23
86
4
63
45
9
4
40
1.56
97381964--97381999
12
2.9
12
87
4
54
33
11
0
55
1.35
97385546--97385576
8
3.9
8
91
0
53
67
12
0
19
1.22
97385542--97385577
16
2.2
16
100
0
72
69
11
0
19
1.18
97391170--97391415
49
4.9
50
81
4
291
26
19
25
28
1.99
97398802--97398836
18
1.9
18
94
0
61
14
0
22
62
1.31
97399091--97399254
89
1.9
88
97
1
310
40
10
5
43
1.63
97400783--97400824
22
1.9
22
85
0
57
45
0
4
50
1.23
97400874--97400906
16
2.0
17
88
5
50
45
6
0
48
1.27
97406764--97406999
46
5.1
46
86
2
278
18
21
13
45
1.84
97407009--97407143
33
4.1
33
70
9
78
24
25
19
30
1.98
97408673--97408699
14
1.9
14
100
0
54
14
14
22
48
1.81
97419635--97419674
20
2.0
20
95
0
71
47
30
5
17
1.69
97426111--97426147
16
2.4
16
90
4
58
72
0
2
24
0.97
97426123--97426192
24
2.8
25
74
8
63
62
1
2
32
1.18
97426154--97426213
28
2.1
28
81
6
68
56
3
1
38
1.26
97432273--97432380
26
4.2
26
89
0
171
31
6
25
37
1.81
97439361--97439468
26
4.2
26
90
0
162
34
8
22
35
1.84
97439361--97439468
52
2.1
52
94
3
191
34
8
22
35
1.84
97440925--97440976
25
2.0
26
85
3
70
36
23
13
26
1.92
97441525--97441864
1
340.0
1
87
0
347
4
2
4
89
0.66
97442714--97442753
21
1.9
21
85
10
55
50
20
12
17
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97444260--97444347
30
3.0
28
75
17
79
65
4
3
26
1.27
97466343--97466370
13
2.2
13
100
0
56
32
0
14
53
1.41
97470063--97470350
49
5.8
49
78
4
326
26
19
26
28
1.99
97470058--97470345
100
2.9
100
93
0
495
26
19
26
28
1.99
97474602--97474860
46
5.6
46
91
0
376
42
13
23
21
1.88
97475157--97475189
17
2.0
17
94
5
59
48
0
15
36
1.45
97476004--97476052
25
2.0
25
83
0
62
34
12
18
34
1.88
97489504--97489544
20
2.0
20
85
0
55
34
21
14
29
1.93
97492620--97492745
33
3.8
33
84
0
135
41
14
23
20
1.89
97492620--97492745
66
1.9
66
81
0
153
41
14
23
20
1.89
97492668--97492760
33
2.8
33
83
6
100
46
11
22
19
1.82
97496978--97497018
16
2.6
16
84
0
55
41
7
7
43
1.60
97497163--97497212
3
16.7
3
91
0
82
30
0
4
66
1.10
97504430--97504476
24
1.9
26
87
12
73
40
0
0
59
0.97
97504433--97504485
23
2.3
23
80
9
63
45
0
1
52
1.11
97508078--97508152
37
2.0
37
100
0
150
37
10
18
33
1.86
97511575--97511612
17
2.2
18
86
13
53
39
15
7
36
1.77
97511584--97511629
17
2.7
17
80
12
51
39
15
6
39
1.73
97511601--97511654
25
2.1
26
93
3
92
38
12
7
40
1.72
97511611--97511666
25
2.2
25
90
6
85
37
12
7
42
1.70
97511831--97511887
29
2.0
29
85
0
78
43
21
22
12
1.85
97512210--97512396
94
2.0
93
96
1
347
36
20
4
39
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97514628--97515030
202
2.0
201
97
0
752
29
19
13
37
1.90
97527231--97527265
12
2.8
12
86
4
52
40
22
5
31
1.78
97527628--97527673
24
2.0
23
88
12
69
23
17
4
54
1.61
97531860--97532124
95
2.8
95
77
2
264
36
13
18
31
1.90
97534131--97534235
26
4.0
26
91
0
174
33
6
23
36
1.81
97535724--97535775
25
2.0
26
82
10
63
44
19
11
25
1.84
97539918--97539963
22
2.1
22
87
0
65
41
0
17
41
1.49
97546480--97546550
21
3.3
21
62
14
54
42
7
5
45
1.55
97546469--97546558
44
2.0
44
100
0
180
42
6
4
46
1.50
97546472--97546545
23
3.3
23
66
27
68
40
8
5
45
1.56
97552934--97553081
37
4.0
37
93
0
251
28
20
13
37
1.91
97568296--97568433
57
2.4
57
89
2
206
37
2
20
39
1.68
97578426--97578513
22
3.7
24
78
17
87
46
1
1
51
1.15
97578426--97578513
23
3.7
25
78
15
73
46
1
1
51
1.15
97581573--97581603
6
5.3
6
92
7
55
19
0
80
0
0.71
97581780--97581809
9
3.3
9
100
0
60
40
0
10
50
1.36
97598115--97598169
21
2.6
21
91
0
83
30
9
30
29
1.88
97599660--97599778
41
2.9
41
89
1
175
31
21
24
21
1.98
97600969--97601011
21
2.0
21
86
8
61
16
0
51
32
1.45
97600964--97600994
14
2.1
15
94
5
55
16
0
45
38
1.47
97601020--97601090
32
2.2
32
92
2
117
35
2
16
45
1.63
97601559--97601610
14
3.8
13
77
12
52
59
3
1
34
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97601638--97601705
20
2.8
24
67
32
56
47
5
4
42
1.48
97604750--97604797
20
2.4
21
82
10
64
22
2
6
68
1.23
97604854--97604907
28
1.9
28
85
7
74
33
1
7
57
1.37
97605808--97605950
33
4.3
33
76
7
121
27
4
44
22
1.73
97606054--97606211
51
3.1
51
89
0
235
29
9
25
35
1.88
97609663--97609894
49
4.7
49
82
3
284
28
27
19
25
1.99
97609663--97609894
100
2.3
98
84
2
293
28
27
19
25
1.99
97610138--97610192
27
2.0
27
85
0
74
38
14
7
40
1.74
97613812--97613853
19
2.2
20
86
4
59
40
11
14
33
1.82
97614484--97614528
22
2.0
22
95
0
81
40
11
11
37
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344