Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  273  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91380740--91380800
30
2.0
30
83
0
77
31
22
8
37
1.84
91385202--91385329
64
2.0
64
95
0
229
31
18
13
36
1.89
91385444--91385831
45
8.8
44
73
5
201
28
19
23
28
1.98
91385404--91385691
133
2.2
132
91
1
459
28
18
23
29
1.98
91385631--91385739
43
2.5
43
83
1
137
27
22
23
26
1.99
91392054--91392269
39
5.6
39
84
6
165
24
20
28
26
1.99
91392054--91392269
78
2.8
77
81
6
211
24
20
28
26
1.99
91392106--91392269
39
4.2
40
89
3
203
23
21
29
26
1.99
91399944--91400108
79
2.1
79
82
2
197
23
21
30
24
1.99
91399944--91400108
40
4.2
40
84
1
181
23
21
30
24
1.99
91399966--91400147
79
2.3
80
79
2
190
25
20
30
24
1.99
91415355--91415406
14
3.6
14
77
15
52
73
1
1
23
1.04
91425168--91425345
27
6.6
27
83
5
180
29
28
15
26
1.96
91425189--91425344
82
1.9
81
86
3
224
28
28
16
26
1.97
91430309--91430379
21
3.2
21
65
18
54
40
26
12
19
1.88
91432459--91432515
28
2.0
28
100
0
114
29
3
21
45
1.68
91432811--91432848
20
2.0
20
89
5
60
42
5
0
52
1.24
91450172--91450302
45
3.0
45
86
2
167
24
19
29
26
1.99
91456469--91456803
163
2.1
163
100
0
670
39
4
18
37
1.72
91458055--91458185
45
3.0
45
84
4
160
24
20
28
26
1.99
91461078--91461124
21
2.2
21
85
7
60
51
19
4
25
1.65
91466493--91466527
11
3.2
11
87
0
52
51
0
20
28
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91469305--91469497
50
3.8
50
80
5
219
25
18
25
30
1.98
91469305--91469488
101
1.8
101
89
2
289
25
18
25
30
1.98
91476709--91476947
50
4.8
50
76
10
211
26
17
24
31
1.97
91476709--91476950
101
2.4
98
81
4
270
26
17
24
31
1.97
91479363--91479543
99
1.8
98
80
3
220
28
11
22
38
1.88
91486987--91487020
13
2.6
13
95
0
59
29
23
38
8
1.85
91490867--91490893
14
1.9
14
100
0
54
37
3
0
59
1.15
91491580--91491684
28
3.7
28
72
17
90
26
27
20
25
1.99
91491583--91491719
59
2.3
59
86
6
179
27
26
20
26
1.99
91494667--91494705
17
2.4
17
87
12
55
41
5
12
41
1.65
91494665--91494700
18
2.1
18
94
5
65
41
5
11
41
1.64
91505641--91505700
27
2.2
27
96
0
111
36
0
8
55
1.30
91507787--91507824
6
6.3
6
100
0
76
36
0
15
47
1.46
91512469--91512500
17
1.9
16
93
6
55
37
12
12
37
1.81
91512881--91512920
21
2.0
20
85
5
53
25
0
27
47
1.52
91531576--91531623
25
2.0
25
95
4
89
18
18
0
62
1.33
91531578--91531631
25
2.2
25
86
0
72
18
14
1
64
1.37
91532838--91532880
17
2.5
17
78
10
52
30
11
4
53
1.57
91534070--91534143
20
3.5
21
75
13
71
60
1
0
37
1.05
91534109--91534144
18
2.0
18
94
0
63
63
0
0
36
0.94
91537152--91537210
23
2.6
23
100
0
118
11
32
37
18
1.87
91545812--91546130
49
6.7
47
71
16
205
26
17
30
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91545769--91545981
46
4.6
46
75
9
157
25
21
30
23
1.99
91551284--91551334
21
2.4
22
80
9
61
33
31
5
29
1.81
91554095--91554272
27
6.6
27
83
3
205
27
15
28
29
1.96
91554096--91554251
82
1.9
81
86
3
224
27
15
28
28
1.96
91554092--91554272
82
2.2
81
82
2
220
27
15
27
29
1.96
91567882--91568105
40
5.6
40
85
3
288
24
23
26
25
2.00
91567886--91568105
83
2.7
80
86
5
284
23
24
26
25
2.00
91575958--91576181
40
5.6
40
86
3
288
23
23
26
26
2.00
91575962--91576181
83
2.7
80
87
5
284
23
23
27
25
2.00
91590891--91590915
13
1.9
13
100
0
50
56
0
0
44
0.99
91590967--91591009
21
2.0
23
86
9
63
62
6
0
30
1.21
91591218--91591265
22
2.1
23
85
11
64
16
4
4
75
1.12
91591793--91591832
20
2.0
20
85
9
55
47
0
10
42
1.37
91609831--91609872
18
2.3
18
95
0
75
21
14
16
47
1.82
91610682--91610715
12
2.8
12
81
0
50
29
44
23
2
1.68
91622237--91622274
19
2.0
19
89
0
58
28
23
7
39
1.83
91624241--91624276
17
2.1
18
94
5
65
44
0
22
33
1.53
91628467--91628547
37
2.2
38
86
2
110
25
30
18
24
1.98
91628678--91629103
47
9.1
47
90
0
638
25
30
10
32
1.90
91637238--91637323
13
6.2
13
73
13
50
39
1
0
59
1.05
91637463--91637538
22
3.5
22
70
13
68
44
5
5
44
1.49
91637449--91637531
42
2.0
42
95
0
148
46
4
4
43
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91641283--91641343
22
2.7
22
76
5
59
37
3
6
52
1.44
91641902--91641944
22
2.0
22
86
9
61
65
13
0
20
1.27
91645313--91645349
19
1.9
19
88
0
56
59
0
2
37
1.12
91660670--91660798
66
2.0
66
90
3
206
25
21
20
32
1.97
91665779--91665812
15
2.3
15
89
0
50
55
20
8
14
1.65
91666951--91666985
16
2.2
16
89
0
52
40
22
8
28
1.84
91669367--91669402
18
1.9
19
94
5
65
33
0
38
27
1.57
91669374--91669418
18
2.5
18
85
7
56
35
0
40
24
1.56
91669411--91669494
41
2.0
41
81
9
98
22
3
32
41
1.71
91669849--91669910
7
8.9
7
76
13
56
38
38
0
22
1.54
91670047--91670114
15
4.7
15
85
3
77
23
50
1
25
1.58
91670045--91670114
30
2.4
29
80
4
86
25
48
1
24
1.59
91670063--91670154
15
6.4
14
79
10
62
35
39
0
25
1.56
91670131--91670185
7
7.6
7
76
8
56
49
23
0
27
1.51
91670125--91670185
14
4.1
15
77
10
63
49
26
0
24
1.51
91670118--91670163
22
2.1
22
84
8
58
50
28
0
21
1.49
91670125--91670186
15
4.1
15
81
4
72
50
25
0
24
1.50
91670525--91670617
39
2.4
40
89
5
145
30
15
17
37
1.90
91670701--91670819
40
3.0
40
83
4
134
27
20
22
29
1.98
91671336--91671360
10
2.5
10
100
0
50
60
16
0
24
1.36
91671300--91671525
59
3.7
59
94
5
362
50
12
9
28
1.71
91671395--91671419
10
2.5
10
100
0
50
60
16
0
24
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91671395--91671525
69
1.9
68
90
6
210
51
12
8
28
1.68
91671692--91671716
4
6.2
4
100
0
50
0
24
0
76
0.80
91673057--91673112
25
2.3
24
93
3
94
73
0
3
23
0.99
91673057--91673119
12
5.2
12
80
16
69
74
0
3
22
0.96
91675266--91675321
20
2.8
20
83
2
69
33
23
16
26
1.95
91677768--91677799
12
2.7
12
100
0
64
59
12
0
28
1.34
91682021--91682120
47
2.2
45
85
8
130
46
12
9
33
1.72
91682474--91682521
20
2.4
20
79
6
62
64
2
10
22
1.35
91687695--91687870
46
3.8
45
81
10
212
21
21
29
28
1.98
91687691--91687862
93
1.8
93
94
0
308
20
21
30
27
1.98
91693903--91693951
18
2.6
18
80
6
53
57
0
0
42
0.99
91695120--91695202
40
2.1
40
81
2
105
48
7
6
38
1.56
91703303--91703352
27
1.9
25
88
8
73
44
0
0
56
0.99
91709858--91709901
20
2.1
22
83
8
56
63
0
4
31
1.14
91721343--91721442
45
2.2
45
92
1
175
25
31
3
41
1.70
91730670--91730724
25
2.2
25
86
3
74
67
3
1
27
1.17
91734092--91734138
23
2.0
23
95
0
85
38
6
21
34
1.79
91736892--91736975
41
2.0
41
100
0
168
48
11
15
23
1.78
91745857--91746054
81
2.5
80
91
1
324
15
20
29
34
1.93
91745856--91746054
40
4.9
40
91
1
326
15
20
29
35
1.93
91762432--91762609
39
4.5
39
89
2
232
25
21
26
25
2.00
91762386--91762609
40
5.7
40
84
7
255
25
22
27
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91762386--91762609
79
2.8
80
82
9
253
25
22
27
25
2.00
91762439--91762642
79
2.6
79
83
6
211
26
21
27
24
1.99
91764859--91765171
47
6.7
45
75
10
202
30
18
28
23
1.97
91764905--91765171
94
2.8
91
77
8
252
29
17
29
23
1.97
91765895--91766111
84
2.6
83
85
2
274
14
25
29
29
1.95
91765893--91766111
42
5.2
42
79
3
226
14
26
30
29
1.95
91769486--91769751
47
5.7
46
78
7
214
27
21
29
21
1.98
91769580--91769751
93
1.8
94
83
6
233
26
22
30
21
1.99
91769486--91769751
140
1.9
141
84
2
356
27
21
29
21
1.98
91772564--91772601
14
2.9
13
81
11
51
57
10
13
18
1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344