genome.fa.s10.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  105  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35310084--35310141	26	2.2	26	81	6	73	74	3	6	15	1.17
35310121--35310183	26	2.4	26	86	7	83	74	6	14	4	1.18
35310074--35310156	38	2.2	38	86	0	112	72	6	7	14	1.26
35311220--35311327	6	17.7	6	68	6	65	70	2	19	7	1.24
35311207--35311327	57	2.1	55	82	11	138	69	2	19	8	1.26
35311206--35311282	18	4.5	17	73	14	68	68	3	18	9	1.31
35311288--35311325	13	2.8	13	82	17	51	73	0	18	7	1.06
35311289--35311339	21	2.4	21	74	6	50	74	1	17	5	1.11
35311241--35311345	27	3.8	27	71	9	77	68	2	20	8	1.29
35311408--35311513	48	2.2	47	86	9	144	60	1	23	14	1.44
35311704--35311750	20	2.3	20	85	0	67	29	36	12	21	1.91
35313245--35313283	11	3.2	13	86	13	57	74	7	5	12	1.20
35313245--35313283	12	3.2	12	89	10	53	74	7	5	12	1.20
35313254--35313319	22	2.9	22	80	8	62	75	6	10	7	1.17
35313285--35313365	27	2.9	27	82	15	94	71	4	14	8	1.27
35319116--35319162	20	2.3	20	85	0	67	29	36	12	21	1.91
35323260--35323309	21	2.4	21	93	0	82	32	36	2	30	1.69
35323247--35323309	11	5.9	11	73	12	51	31	34	3	30	1.74
35324253--35324286	4	8.0	4	90	9	50	23	0	2	73	0.97
35324236--35324295	22	2.7	22	73	19	61	26	0	6	66	1.16
35325245--35325307	33	1.9	33	84	12	85	14	26	4	53	1.60
35325305--35325360	21	2.7	21	72	5	51	8	17	1	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35325304--35325360	14	4.1	14	75	16	57	8	17	1	71	1.19
35325322--35325460	18	7.7	18	71	11	88	7	20	2	69	1.27
35325322--35325429	6	17.7	6	70	5	74	6	18	3	71	1.23
35328356--35328400	14	3.3	14	78	6	56	48	15	0	35	1.45
35329788--35329812	13	1.9	13	100	0	50	36	16	32	16	1.90
35331625--35331658	18	1.9	18	88	5	52	8	35	2	52	1.47
35332699--35332736	16	2.5	15	87	12	51	5	15	7	71	1.28
35332740--35332790	17	3.5	14	78	17	59	15	5	3	74	1.16
35333845--35333869	13	1.9	13	100	0	50	36	16	32	16	1.90
35345274--35345320	22	2.1	22	100	0	94	25	27	8	38	1.85
35346304--35346472	93	1.8	93	93	2	295	28	29	20	21	1.98
35346294--35346469	46	3.8	46	78	16	202	29	29	20	20	1.98
35353380--35353598	46	4.7	46	83	8	246	27	21	29	21	1.98
35360512--35360549	18	2.2	18	86	9	53	63	2	10	23	1.39
35363732--35363758	13	2.1	13	100	0	54	14	14	7	62	1.51
35364748--35364982	116	2.0	116	100	0	470	22	15	19	42	1.88
35368680--35368732	21	2.7	19	78	16	54	45	0	3	50	1.19
35369363--35369395	12	2.8	12	90	9	50	51	3	3	42	1.32
35371825--35371873	17	2.8	18	84	6	73	34	2	0	63	1.06
35379057--35379094	17	2.3	16	90	4	58	42	5	0	52	1.24
35379600--35379624	13	1.9	13	100	0	50	64	4	0	32	1.12
35380910--35380962	26	2.1	24	89	6	79	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35381666--35381698	16	2.1	16	94	0	57	33	12	39	15	1.84
35385600--35385761	45	3.6	45	93	0	263	24	22	27	26	2.00
35399684--35399733	10	4.8	10	80	9	55	60	12	0	28	1.32
35400838--35400882	8	5.5	8	86	5	54	66	0	0	33	0.92
35400838--35400886	25	1.9	26	87	4	73	67	0	0	32	0.91
35400839--35400879	17	2.4	17	83	4	55	65	0	0	34	0.93
35401662--35401691	15	2.0	15	93	0	51	30	3	0	66	1.07
35404125--35404227	43	2.4	43	83	6	120	28	16	21	33	1.95
35410638--35410900	40	6.6	40	88	3	325	26	27	20	24	1.99
35416123--35416160	19	2.0	19	100	0	76	31	31	10	26	1.90
35433124--35433221	28	3.5	28	82	12	112	28	28	15	27	1.96
35440522--35440600	39	2.0	39	97	0	149	30	24	5	40	1.76
35443607--35443784	27	6.6	27	84	3	205	29	28	15	26	1.96
35443628--35443783	82	1.9	81	88	3	233	29	28	15	26	1.96
35451781--35451957	27	6.6	27	82	5	178	29	28	14	27	1.95
35451781--35451957	55	3.3	54	82	4	205	29	28	14	27	1.95
35459333--35459489	47	3.3	46	90	1	224	34	9	29	26	1.88
35461497--35461678	40	4.6	40	89	2	260	26	26	21	24	2.00
35468521--35468577	29	2.2	26	81	15	64	31	22	19	26	1.98
35470304--35470337	18	1.9	18	94	5	61	55	5	11	26	1.58
35471053--35471100	10	4.8	10	85	10	71	68	2	8	20	1.26
35471053--35471112	20	3.0	19	85	9	75	68	3	6	21	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35472243--35472311	29	2.4	29	92	0	120	20	17	27	34	1.95
35484334--35484362	14	2.1	14	100	0	58	41	13	24	20	1.89
35484288--35484409	61	2.0	62	93	3	210	35	9	26	29	1.87
35484348--35484590	47	5.1	47	91	1	369	32	9	30	27	1.88
35486813--35487134	40	8.1	40	89	1	450	25	22	27	24	2.00
35487333--35487441	57	1.9	57	88	1	164	23	19	28	28	1.98
35491281--35491590	47	6.6	47	91	1	476	32	8	29	29	1.87
35491281--35491590	96	3.3	96	91	3	488	32	8	29	29	1.87
35491281--35491590	143	2.2	141	90	1	476	32	8	29	29	1.87
35494377--35494424	23	2.1	23	96	0	87	25	33	14	27	1.94
35494562--35494592	7	4.4	7	100	0	62	41	29	0	29	1.56
35499629--35499751	26	4.7	27	80	10	112	27	26	16	30	1.97
35499629--35499750	52	2.3	53	80	2	138	27	26	16	29	1.97
35504130--35504263	43	2.9	44	81	8	144	23	17	29	29	1.97
35506570--35506827	40	6.5	40	93	2	353	22	24	27	24	2.00
35514729--35514946	40	5.5	40	90	2	307	22	23	28	25	1.99
35519111--35519162	19	2.7	18	88	8	68	69	1	1	26	1.10
35525223--35525261	18	2.2	18	85	0	51	61	2	23	12	1.43
35529035--35529073	18	2.2	18	85	0	51	61	2	23	12	1.43
35536138--35536172	17	2.1	17	88	0	52	20	8	14	57	1.63
35541305--35541351	21	2.2	20	85	7	58	23	2	2	72	1.06
35541305--35541360	20	2.8	20	78	10	60	25	1	1	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35555001--35555044	20	2.2	20	100	0	88	31	36	22	9	1.86
35556326--35556397	37	1.9	37	81	15	87	45	18	9	26	1.80
35567897--35567926	16	1.9	16	93	6	53	33	23	0	43	1.54
35568138--35568267	50	2.6	49	82	3	154	33	26	14	24	1.94
35574652--35574691	20	2.0	20	90	0	62	5	27	22	45	1.73
35577054--35577425	50	7.7	50	77	11	318	28	18	29	23	1.98
35577054--35577425	94	3.8	97	78	11	356	28	18	29	23	1.98
35580979--35581024	22	2.1	22	95	0	83	30	19	15	34	1.93
35588164--35588209	22	2.1	22	95	0	83	30	19	15	34	1.93
35591566--35591660	48	2.0	48	91	0	154	24	20	14	41	1.89
35602472--35602504	17	1.9	17	93	0	57	54	12	15	18	1.71
35605750--35605873	62	2.0	62	91	0	203	32	20	8	37	1.84
35609943--35610021	37	2.1	37	83	4	97	26	29	18	25	1.98
35610140--35610583	47	9.4	47	93	1	710	29	29	8	33	1.86
35634601--35634708	39	2.7	40	81	8	148	25	21	27	25	1.99
35634601--35634741	39	3.6	40	76	12	130	27	21	26	24	1.99
35656735--35656803	19	3.8	19	70	21	67	30	14	40	14	1.86
35656732--35656796	33	2.0	33	100	0	130	29	15	43	12	1.83
35670279--35670587	46	6.7	46	92	2	442	21	22	14	42	1.88
35672645--35672700	21	2.6	21	70	10	51	37	3	5	53	1.41
35674811--35675070	99	2.8	92	81	9	262	27	18	30	24	1.98
35674719--35675076	47	7.6	47	73	14	269	26	19	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35677736--35677773	2	19.0	2	100	0	76	50	0	50	0	1.00
35682479--35682835	47	7.6	47	76	11	238	28	18	29	23	1.98
35682479--35682835	137	2.5	141	80	9	345	28	18	29	23	1.98
35682571--35682787	99	2.3	91	83	12	264	27	17	31	24	1.97
35683883--35683946	31	2.1	31	90	0	101	34	17	18	29	1.94
35684017--35684055	21	1.9	21	89	5	62	12	38	25	23	1.90
35695558--35695688	66	2.0	66	95	0	235	19	38	19	22	1.94
35696898--35696985	45	1.9	46	84	6	117	36	14	21	27	1.93
35702390--35702453	28	2.2	28	83	2	83	29	25	4	40	1.76
35702561--35702598	18	2.1	18	85	9	51	68	7	0	23	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344