genome.fa.s10.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  163  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54425877--54426001	45	2.8	44	83	9	146	26	14	26	32	1.94
54444317--54444354	18	2.1	18	90	9	60	55	2	15	26	1.54
54446106--54446152	19	2.5	19	96	0	85	19	29	29	21	1.97
54454115--54454247	61	2.2	62	87	1	196	25	21	36	15	1.93
54457054--54457222	46	3.7	46	79	4	196	30	28	19	21	1.98
54457055--54457225	93	1.8	93	93	0	297	29	28	19	21	1.98
54478160--54478324	46	3.6	45	76	16	169	29	28	18	23	1.98
54478161--54478330	93	1.8	92	91	6	281	29	28	20	22	1.98
54478158--54478346	46	4.1	45	71	19	131	29	28	19	22	1.98
54481178--54481361	67	2.8	64	76	7	183	30	17	29	22	1.97
54484124--54484186	31	2.1	31	90	3	101	28	3	9	58	1.45
54484270--54484309	18	2.2	18	86	8	55	20	0	12	67	1.22
54484311--54484343	11	2.9	12	86	13	52	66	0	0	33	0.92
54487368--54487590	40	5.6	40	86	3	236	24	21	27	26	1.99
54487443--54487625	79	2.3	80	81	1	217	25	20	27	26	1.99
54495264--54495486	40	5.6	40	85	3	227	24	21	27	26	1.99
54495339--54495521	79	2.3	80	82	1	226	25	20	27	25	1.99
54496840--54496868	2	14.5	2	100	0	58	0	0	48	51	1.00
54498751--54499036	62	4.6	62	84	3	371	26	28	24	20	1.99
54498756--54499036	122	2.3	122	84	5	368	26	27	24	20	1.99
54500865--54500981	46	2.5	46	84	6	139	27	29	16	27	1.97
54503270--54503472	54	3.8	53	76	5	149	38	18	23	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54517473--54517682	40	5.3	40	92	0	314	26	28	20	24	1.99
54517476--54517735	80	3.3	80	86	2	265	25	28	21	24	1.99
54517471--54517735	120	2.2	118	81	4	307	26	27	21	24	1.99
54525422--54525631	40	5.3	40	92	0	314	26	28	20	24	1.99
54525425--54525684	80	3.3	80	86	2	265	25	28	21	24	1.99
54525420--54525684	120	2.2	118	81	4	307	26	27	21	24	1.99
54529468--54529987	261	2.0	261	96	0	968	25	12	21	41	1.88
54536463--54536509	21	2.2	22	92	3	78	21	38	19	21	1.94
54541495--54541533	17	2.2	17	86	4	51	12	17	10	58	1.61
54541492--54541534	18	2.4	19	80	11	54	13	18	9	58	1.62
54544652--54544710	29	2.2	26	85	11	75	45	8	15	30	1.75
54544648--54544703	29	1.9	29	100	0	112	48	8	14	28	1.74
54553641--54553811	93	1.8	93	91	0	279	26	28	22	21	1.99
54553633--54553802	46	3.7	45	79	10	191	28	29	21	20	1.98
54555731--54555779	18	2.8	18	78	3	55	79	6	0	14	0.91
54567788--54567813	7	3.7	7	100	0	52	57	0	0	42	0.98
54572834--54572878	23	1.9	24	86	4	65	62	4	8	24	1.43
54573015--54573055	21	2.0	21	100	0	82	43	4	29	21	1.73
54575390--54575424	17	2.1	17	88	0	52	14	0	25	60	1.35
54578102--54578149	22	2.2	22	85	7	62	18	22	6	52	1.68
54579622--54579677	25	2.3	24	85	14	71	8	32	1	57	1.40
54580413--54580528	58	2.0	58	93	0	196	41	10	18	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54581347--54581454	54	2.0	54	100	0	216	35	18	14	31	1.91
54589167--54589200	10	3.1	11	87	12	52	82	5	8	2	0.93
54591813--54592298	246	2.0	247	91	0	785	30	10	28	30	1.91
54595706--54595836	47	2.8	46	82	13	160	26	19	29	24	1.98
54601998--54602031	3	11.3	3	100	0	68	0	35	0	64	0.94
54601957--54602056	15	6.5	15	72	15	53	2	22	5	71	1.16
54616634--54616683	24	2.0	25	81	11	59	28	34	8	30	1.86
54616832--54617147	40	8.1	40	83	5	380	26	27	21	24	1.99
54616832--54617140	77	3.9	79	84	5	371	26	28	21	24	1.99
54619372--54619862	47	10.6	46	89	5	674	29	29	7	32	1.85
54624306--54624380	37	2.0	37	84	0	96	40	14	9	36	1.78
54625271--54625413	57	2.5	57	80	1	142	44	5	18	31	1.73
54628704--54628794	47	1.9	47	88	4	139	27	19	21	30	1.98
54632430--54632601	40	4.3	40	87	2	213	26	27	20	25	1.99
54632430--54632654	80	2.8	79	80	7	231	26	27	20	25	1.99
54632586--54632663	40	1.9	42	84	10	108	26	28	19	25	1.99
54639777--54639948	40	4.3	40	88	2	222	25	27	21	25	1.99
54639779--54640001	40	5.6	39	83	5	216	25	27	21	25	1.99
54639777--54640001	80	2.8	79	80	7	240	25	27	21	25	1.99
54639933--54640010	40	1.9	41	82	10	97	26	28	20	24	1.99
54641710--54641772	23	2.7	24	75	20	69	41	7	22	28	1.82
54643246--54643359	37	3.1	37	87	1	158	30	30	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54643505--54643689	48	3.8	48	90	2	307	31	27	5	35	1.81
54643505--54643688	98	1.9	98	93	2	318	31	27	5	35	1.81
54643659--54643852	47	4.1	47	93	0	316	26	28	10	34	1.90
54643727--54643853	25	5.3	25	64	21	92	27	27	10	34	1.89
54643685--54643873	94	2.1	91	83	7	231	30	25	9	33	1.88
54648409--54648962	50	11.0	50	75	4	434	28	18	24	28	1.98
54648414--54648896	101	4.8	101	78	3	513	28	19	24	28	1.98
54649160--54649189	16	1.9	15	93	6	51	43	0	23	33	1.54
54653931--54653956	2	13.0	2	100	0	52	50	0	0	50	1.00
54655459--54655809	50	7.0	50	83	2	357	25	18	26	29	1.98
54655519--54655646	51	2.5	51	100	0	256	27	23	22	26	2.00
54656007--54656036	16	1.9	15	93	6	51	43	0	23	33	1.54
54659996--54660027	3	10.7	3	93	0	55	31	3	0	65	1.08
54661472--54661507	8	4.5	8	85	0	54	52	19	22	5	1.66
54661759--54661820	26	2.3	27	72	10	65	37	22	8	32	1.83
54661926--54662031	27	3.9	27	87	2	142	23	25	16	33	1.96
54661925--54662031	55	2.0	54	87	5	153	23	25	16	34	1.95
54674990--54675028	20	1.9	21	84	5	53	58	0	7	33	1.26
54679217--54679327	29	3.9	29	79	3	118	26	32	13	27	1.94
54681529--54681659	47	2.8	47	77	17	137	25	27	18	28	1.98
54682551--54682575	9	2.8	9	100	0	50	68	24	0	8	1.16
54687984--54688154	46	3.7	46	79	6	193	22	29	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54687984--54688157	94	1.9	92	84	7	235	22	29	20	27	1.98
54688807--54688846	21	2.0	21	85	5	55	35	25	0	40	1.56
54689026--54689051	9	2.9	9	100	0	52	65	23	0	11	1.25
54692055--54692113	30	2.0	30	86	0	82	32	15	25	27	1.95
54692458--54692676	46	4.7	46	78	12	175	25	18	31	25	1.98
54695055--54695180	46	2.7	46	84	8	141	28	29	20	21	1.98
54699047--54699083	16	2.4	15	86	8	56	51	24	18	5	1.67
54699308--54699392	29	2.9	28	74	6	71	30	17	23	28	1.97
54702346--54702373	14	2.0	14	100	0	56	28	28	7	35	1.84
54727848--54727930	35	2.4	35	82	8	98	46	22	4	25	1.71
54727901--54727967	35	1.9	35	87	0	98	46	17	7	28	1.75
54728261--54728380	56	2.1	56	96	0	222	45	9	22	22	1.80
54729508--54729772	40	6.7	40	87	4	331	24	21	28	25	1.99
54729561--54729805	120	2.1	118	84	4	314	25	20	28	25	1.99
54737435--54737629	40	4.9	40	83	5	216	24	20	28	26	1.99
54737599--54737660	31	2.0	31	93	0	106	20	17	29	32	1.96
54737559--54737690	71	1.9	71	88	3	203	22	18	28	30	1.97
54741628--54741805	27	6.6	27	82	3	205	26	15	27	30	1.96
54741629--54741784	82	1.9	81	86	3	224	26	15	27	30	1.96
54741625--54741805	82	2.2	81	82	2	220	27	15	27	30	1.96
54747580--54747631	26	2.0	26	100	0	104	19	15	26	38	1.91
54748194--54748309	28	4.2	28	85	2	155	37	20	24	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54753152--54753271	59	2.0	59	93	0	204	37	16	6	39	1.75
54753488--54753649	35	4.6	35	77	4	157	42	19	8	29	1.81
54757531--54757622	42	2.2	42	90	0	139	34	20	15	29	1.93
54757770--54757839	25	2.8	26	86	4	90	25	22	25	25	2.00
54758755--54758806	27	1.9	27	88	0	77	36	13	11	38	1.81
54758821--54758916	27	3.6	27	81	8	90	26	6	21	45	1.75
54758948--54759053	27	3.9	27	81	0	122	38	6	21	33	1.80
54758939--54759066	54	2.4	53	79	11	143	38	8	21	32	1.83
54761383--54761474	42	2.2	42	90	0	139	34	20	15	29	1.93
54761622--54761690	25	2.8	25	84	0	84	23	26	27	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344