genome.fa.s10.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  97  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32514338--32514562	40	5.7	40	85	5	287	24	21	28	25	1.99
32514338--32514595	119	2.2	119	81	6	283	25	21	27	25	1.99
32520095--32520245	27	5.6	27	81	4	169	27	15	28	29	1.96
32520096--32520245	82	1.8	81	88	4	230	26	15	28	29	1.96
32520095--32520245	55	2.8	53	81	4	167	27	15	28	29	1.96
32520177--32520256	27	2.9	27	84	1	70	26	15	28	30	1.96
32528107--32528284	27	6.6	27	83	3	205	26	15	28	29	1.96
32528108--32528263	82	1.9	81	88	3	233	26	15	28	29	1.96
32528104--32528284	82	2.2	81	83	2	229	27	15	27	29	1.96
32528189--32528295	27	3.9	27	85	1	70	26	14	28	30	1.95
32533622--32533846	79	2.8	80	82	7	262	24	21	27	25	1.99
32533622--32533846	40	5.7	40	85	5	278	24	21	27	25	1.99
32533677--32533879	80	2.6	80	84	6	218	26	20	28	25	1.99
32540368--32540489	29	4.2	29	77	0	109	31	13	17	37	1.89
32540368--32540489	58	2.1	58	78	0	127	31	13	17	37	1.89
32540440--32540505	29	2.3	29	83	0	78	43	10	10	34	1.74
32540529--32540675	29	5.1	29	80	4	163	27	16	16	40	1.89
32546329--32546430	26	3.9	26	82	0	123	42	22	14	20	1.89
32546426--32546490	27	2.4	27	89	0	94	35	18	23	23	1.96
32548053--32548111	28	2.1	28	93	0	100	42	16	10	30	1.82
32552829--32552878	26	1.9	26	87	0	73	42	22	16	20	1.89
32556221--32556418	27	7.3	27	85	4	238	28	24	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32556221--32556418	81	2.4	81	88	3	283	28	24	8	38	1.84
32556450--32556519	27	2.6	27	86	8	90	44	24	5	25	1.76
32556475--32556582	27	3.9	27	77	13	103	41	18	8	31	1.80
32556627--32556678	27	1.9	27	84	7	70	38	23	21	17	1.93
32557500--32557569	25	2.8	25	91	0	104	27	24	22	25	2.00
32557500--32557582	25	3.4	25	82	11	84	30	21	22	25	1.99
32557789--32557862	31	2.4	30	88	4	121	31	17	24	27	1.97
32576073--32576119	23	2.0	23	100	0	94	34	12	8	44	1.73
32586825--32586969	43	3.4	43	80	5	159	33	24	15	25	1.95
32601293--32601474	28	6.5	28	92	1	285	27	12	26	33	1.92
32609074--32609114	16	2.4	18	76	16	50	46	7	9	36	1.65
32609583--32609736	28	5.5	28	96	0	265	25	12	28	33	1.92
32609558--32609736	56	3.2	56	91	1	270	25	12	28	33	1.92
32621343--32621558	40	5.4	40	89	2	287	25	27	22	24	2.00
32624456--32624540	26	3.3	26	66	18	68	24	12	25	36	1.92
32624453--32624746	50	5.8	50	82	4	340	25	17	25	31	1.97
32624504--32624746	101	2.4	100	84	2	317	26	17	25	30	1.97
32624457--32624756	151	2.0	151	86	5	417	25	16	26	32	1.96
32628766--32628799	10	3.4	10	87	0	50	20	23	11	44	1.84
32636141--32636247	22	4.7	23	85	8	121	40	21	16	21	1.91
32636141--32636247	46	2.3	46	82	7	121	40	21	16	21	1.91
32643565--32643621	9	5.8	10	76	15	57	36	8	19	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32643564--32643638	20	3.8	20	91	6	111	37	9	18	34	1.83
32643583--32643638	11	5.5	11	71	16	57	37	10	19	32	1.86
32643688--32643775	26	3.4	26	82	0	122	31	18	21	28	1.97
32645464--32645584	39	3.1	39	93	0	206	23	29	24	22	1.99
32647130--32647179	25	2.0	25	88	3	75	26	22	24	28	1.99
32656629--32656684	25	2.2	25	81	9	69	28	17	26	26	1.98
32661811--32661993	55	3.4	54	77	5	145	38	18	22	20	1.94
32661804--32662011	53	3.9	54	78	3	204	38	17	23	20	1.93
32665890--32665919	14	2.1	14	93	0	51	23	6	36	33	1.81
32668377--32668441	34	1.9	34	93	0	112	21	23	24	30	1.99
32669866--32670065	43	4.7	43	79	9	212	25	17	29	28	1.97
32669866--32670065	84	2.3	88	78	9	225	25	17	29	28	1.97
32684832--32685008	40	4.4	40	77	7	182	28	27	20	23	1.99
32690120--32690262	40	3.6	40	90	5	211	25	22	26	25	2.00
32692441--32692479	18	2.2	18	86	9	53	12	46	28	12	1.79
32693007--32693714	359	2.0	360	99	0	1409	33	17	20	28	1.95
32695505--32695547	20	2.1	20	86	4	59	62	0	20	16	1.32
32708890--32709074	40	4.7	40	80	9	193	24	22	28	24	2.00
32708943--32709107	79	2.1	79	83	6	201	26	21	27	24	1.99
32710511--32710570	28	2.2	26	77	11	66	26	26	11	35	1.91
32710525--32710596	28	2.6	28	88	0	99	29	27	12	30	1.93
32713451--32713609	67	2.4	68	82	9	191	33	16	27	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32715712--32716027	55	5.9	54	80	6	354	24	25	16	34	1.95
32715725--32716020	108	2.7	108	91	2	459	24	25	16	34	1.95
32716006--32716127	47	2.6	47	89	2	183	25	25	13	36	1.92
32728926--32728968	16	2.7	16	88	0	68	53	18	20	6	1.67
32729187--32729266	29	2.8	28	87	7	117	22	15	35	27	1.94
32752224--32752447	104	2.2	104	90	1	351	31	30	18	18	1.95
32752776--32752839	30	2.2	29	83	10	85	29	26	6	37	1.81
32752783--32752839	30	1.9	30	89	3	89	29	22	7	40	1.80
32757981--32758204	104	2.2	104	93	1	378	31	31	19	17	1.95
32758533--32758596	30	2.2	29	81	10	76	29	28	6	35	1.82
32758540--32758596	30	1.9	30	85	3	80	29	24	7	38	1.82
32760022--32761795	597	3.0	598	93	0	3104	25	12	22	38	1.90
32788215--32788301	34	2.6	34	81	7	88	25	22	26	25	2.00
32794214--32795863	824	2.0	824	99	0	3273	40	19	8	31	1.82
32796210--32796358	43	3.5	43	77	3	149	30	26	16	26	1.97
32797189--32797229	13	3.0	13	89	7	55	26	0	7	65	1.18
32798581--32798640	29	2.1	29	100	0	120	23	10	21	45	1.82
32799320--32799422	43	2.4	42	78	10	120	21	17	26	34	1.95
32806723--32806834	43	2.6	43	81	6	147	29	19	22	28	1.98
32816586--32816653	29	2.3	29	85	5	93	27	30	13	27	1.94
32816475--32816802	174	1.9	174	97	0	620	30	24	14	29	1.95
32816755--32816833	29	2.7	30	82	13	110	29	30	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32824918--32824996	29	2.7	30	82	13	110	29	30	15	25	1.96
32830850--32830941	35	2.6	35	81	10	107	18	18	18	44	1.87
32830840--32830982	38	4.0	36	78	11	134	15	17	23	44	1.86
32842956--32843133	27	6.6	27	85	3	214	30	28	14	26	1.95
32842977--32843132	82	1.9	81	89	3	242	30	28	14	26	1.95
32849851--32849963	57	2.0	55	93	6	192	46	14	5	34	1.67
32851761--32851920	84	1.9	86	80	7	193	31	26	16	25	1.97
32853049--32853077	14	2.0	15	93	6	51	51	20	0	27	1.47
32858783--32858948	43	3.9	42	76	13	158	29	27	18	25	1.98
32861451--32861620	46	3.7	46	79	6	182	23	28	18	29	1.98
32863420--32863480	32	1.9	32	83	9	81	37	4	0	57	1.20
32863469--32863512	21	2.1	21	83	8	54	54	2	0	43	1.12
32863894--32863931	17	2.2	18	85	4	51	55	0	0	44	0.99
32874110--32874194	32	2.7	32	88	0	125	23	37	27	11	1.90
32874116--32874173	18	3.4	18	67	26	54	22	36	29	12	1.90
32883739--32883914	46	3.8	46	77	14	200	21	20	28	30	1.98
32883736--32883907	93	1.8	93	95	2	310	21	20	28	29	1.98
32891287--32891462	46	3.8	46	78	14	200	21	20	28	29	1.98
32891284--32891455	93	1.8	93	93	2	301	21	20	29	28	1.98
32893397--32893501	27	3.9	27	81	7	106	37	22	21	18	1.94
32893394--32893501	54	2.0	54	82	5	130	37	22	22	17	1.94
32894887--32894937	25	2.0	25	96	0	93	19	37	5	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32901237--32901337	27	3.8	27	80	10	109	35	18	26	18	1.95
32901229--32901337	53	2.1	52	82	5	130	36	20	25	17	1.94
32902705--32902761	25	2.3	24	90	6	87	21	36	5	36	1.76
32917485--32917612	43	3.0	43	83	4	177	28	28	17	25	1.97
32918740--32918768	14	2.0	15	93	6	51	51	20	0	27	1.47
32926485--32926660	46	3.8	47	74	18	170	31	30	18	19	1.96
32940886--32941071	40	4.7	40	88	5	252	24	22	27	26	2.00
32940939--32941104	80	2.1	79	86	5	228	25	20	27	26	1.99
32945254--32945310	29	2.0	27	83	6	69	21	5	8	64	1.41
32945953--32946114	77	2.1	77	89	0	243	28	13	24	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344