genome.fa.s10.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  185  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61791618--61791773	82	1.9	81	88	3	233	28	27	16	27	1.97
61799648--61799825	27	6.6	27	84	3	205	29	28	15	26	1.96
61799669--61799824	82	1.9	81	88	3	233	29	28	15	26	1.96
61805837--61805959	37	3.6	34	85	12	123	25	28	22	23	1.99
61805829--61805959	33	3.8	36	83	13	145	25	29	22	22	1.99
61813921--61814130	40	5.3	39	78	7	228	26	29	20	23	1.99
61813940--61814130	80	2.4	80	92	1	323	26	28	20	24	1.99
61830134--61830205	9	8.2	9	77	9	69	36	0	16	47	1.47
61830138--61830212	34	2.2	34	85	4	98	34	0	16	49	1.46
61830333--61830445	16	7.1	16	77	7	104	37	3	15	44	1.63
61830334--61830458	9	14.2	9	73	17	84	36	3	16	44	1.63
61830295--61830445	80	1.9	80	90	0	239	37	3	13	45	1.61
61830295--61830458	25	6.1	27	72	18	117	37	3	14	45	1.61
61830563--61830901	99	3.5	98	95	2	594	51	4	5	38	1.46
61834899--61834938	21	1.9	21	85	10	55	60	22	0	17	1.37
61835395--61835429	17	2.0	17	88	5	52	65	14	0	20	1.26
61835676--61835700	12	2.1	12	100	0	50	52	32	8	8	1.60
61838875--61839099	40	5.6	40	82	3	272	24	21	28	25	1.99
61838875--61839099	83	2.8	79	84	6	315	24	21	28	25	1.99
61841486--61841603	27	4.3	26	76	8	101	30	40	16	11	1.85
61841480--61841601	55	2.2	55	80	9	142	29	40	17	13	1.87
61855312--61858957	743	4.9	748	75	10	1819	29	23	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61864456--61864622	47	3.6	47	72	13	173	29	31	17	20	1.96
61864446--61864672	93	2.4	93	90	1	357	29	29	18	21	1.97
61864502--61864668	46	3.6	47	73	10	164	31	29	18	20	1.97
61867093--61867156	14	4.4	15	77	13	71	62	14	15	7	1.53
61868567--61868604	19	2.0	19	100	0	76	36	10	5	47	1.61
61870200--61870368	47	3.6	47	72	10	166	29	27	20	22	1.99
61870185--61870420	93	2.5	93	90	1	375	28	27	19	23	1.98
61872837--61872905	15	4.7	15	78	8	79	60	15	14	8	1.57
61875886--61876059	47	3.7	47	75	13	196	28	31	19	21	1.97
61875879--61876051	93	1.9	93	96	0	319	29	31	18	20	1.97
61877968--61878002	15	2.3	15	90	9	54	17	8	0	74	1.06
61886297--61886413	19	6.2	19	67	25	70	30	3	2	63	1.24
61886283--61886340	31	1.9	30	85	3	80	27	3	0	68	1.05
61909619--61909825	53	3.8	53	75	3	180	38	17	23	20	1.93
61915155--61915206	8	6.6	8	86	4	79	86	0	13	0	0.57
61915152--61915206	23	2.5	22	88	5	83	87	0	12	0	0.55
61916145--61916287	43	3.3	43	74	7	137	34	24	18	22	1.96
61916137--61916342	87	2.4	85	86	7	285	34	23	19	21	1.97
61916374--61917027	289	2.3	289	92	0	1085	32	17	20	29	1.96
61918797--61918865	12	6.4	11	73	17	56	37	2	0	59	1.12
61918806--61918912	44	2.4	44	76	21	109	35	5	0	57	1.28
61925027--61925076	1	50.0	1	79	0	55	90	0	10	0	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61925026--61925076	9	5.7	9	86	9	77	88	0	11	0	0.52
61925028--61925076	8	5.6	8	84	15	62	89	0	10	0	0.48
61925026--61925076	19	2.7	19	93	3	86	88	0	11	0	0.52
61926017--61926158	44	3.3	42	69	15	119	32	23	20	23	1.98
61926006--61926226	86	2.6	84	82	9	277	31	22	22	23	1.98
61928521--61928601	12	7.0	12	73	18	66	34	3	0	61	1.14
61928519--61928578	31	1.9	31	93	6	104	38	1	0	60	1.07
61928523--61928574	19	2.8	19	72	13	54	36	1	0	61	1.07
61928499--61928599	31	3.0	35	71	21	99	34	4	0	60	1.18
61928698--61928732	16	2.3	15	90	5	52	40	2	0	57	1.14
61931917--61932178	39	6.7	40	87	7	328	24	27	22	25	2.00
61936869--61937075	53	3.8	53	76	3	198	37	18	23	21	1.94
61942347--61942518	90	1.9	89	80	7	195	38	13	9	38	1.77
61942985--61943186	9	21.6	9	66	17	72	29	3	1	64	1.20
61948748--61948809	24	2.6	23	82	10	72	19	19	25	35	1.95
61956723--61956785	24	2.7	23	83	11	74	20	17	26	34	1.95
61958695--61958840	24	6.1	24	75	5	107	47	22	13	17	1.81
61963377--61963676	12	25.4	12	65	23	81	31	4	1	62	1.22
61963361--61963571	36	5.9	36	69	21	124	30	4	0	63	1.19
61963369--61963570	17	11.1	18	68	17	100	31	3	0	63	1.19
61963369--61963677	52	5.5	55	70	14	179	31	4	0	62	1.21
61963364--61963491	58	2.2	57	80	11	147	30	2	1	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61963364--61963529	56	3.1	53	77	9	149	30	3	1	64	1.18
61963372--61963565	108	1.8	103	81	5	235	30	4	1	63	1.19
61963619--61963670	21	2.5	21	82	14	72	34	0	1	63	1.06
61963364--61963675	17	17.9	17	67	22	95	31	4	0	62	1.22
61965412--61965454	18	2.3	19	88	4	61	48	9	6	34	1.62
61967296--61967325	7	4.1	7	91	8	51	86	0	0	13	0.57
61967298--61967328	8	4.0	8	95	4	55	87	0	0	12	0.55
61970720--61970799	38	2.1	38	90	0	124	20	22	28	28	1.98
61970771--61970955	43	4.3	43	91	1	284	11	23	34	30	1.91
61971276--61971383	45	2.5	42	82	8	110	24	23	25	26	2.00
61972598--61972639	21	2.0	21	81	9	50	35	9	23	30	1.87
61975457--61975748	90	3.1	93	83	9	387	49	8	10	31	1.68
61975950--61975998	17	2.9	17	87	0	71	38	6	2	53	1.38
61977337--61977877	269	2.0	269	90	0	839	34	18	16	30	1.93
61980662--61980769	44	2.5	41	82	10	128	22	17	28	31	1.97
61980662--61980813	42	3.6	41	78	10	135	25	17	26	30	1.97
61984895--61984961	20	3.3	20	74	15	57	10	29	17	41	1.83
61985415--61985488	13	5.6	13	72	3	67	40	4	20	35	1.71
61998844--61998950	43	2.5	43	85	0	142	26	16	26	30	1.97
62001716--62001861	43	3.4	42	80	3	157	31	26	15	26	1.96
62003404--62003477	26	2.7	26	75	22	78	21	16	24	37	1.93
62005677--62005829	42	3.6	42	83	1	180	28	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62009088--62009169	27	3.0	27	83	3	94	26	25	15	31	1.96
62016118--62016157	16	2.5	16	95	0	71	30	12	10	47	1.74
62028197--62028501	40	7.7	39	84	5	362	24	20	29	25	1.99
62028196--62028501	80	3.8	80	91	1	472	24	20	29	26	1.99
62028196--62028501	159	1.9	159	89	2	472	24	20	29	26	1.99
62040091--62040181	39	2.3	39	92	0	146	35	20	21	21	1.96
62040610--62040644	15	2.4	14	90	4	52	20	0	34	45	1.51
62040855--62040894	14	2.9	14	88	0	62	20	0	32	47	1.50
62040861--62040903	21	2.0	21	81	0	50	23	0	32	44	1.54
62041164--62041208	16	2.8	16	93	0	81	40	8	4	46	1.55
62041317--62041346	15	2.0	15	100	0	60	33	0	0	66	0.92
62041634--62041701	25	2.8	25	93	2	111	16	44	22	17	1.87
62041634--62041731	25	3.8	27	86	4	107	14	41	22	21	1.89
62045824--62046492	47	14.4	47	87	8	897	32	8	29	29	1.87
62046614--62046689	37	2.1	37	89	0	116	22	19	31	26	1.98
62049342--62049420	37	2.1	37	86	4	106	25	31	17	25	1.97
62049539--62049745	47	4.4	47	95	0	369	30	29	8	31	1.86
62053580--62053648	27	2.6	27	88	0	102	24	23	14	37	1.92
62057314--62057370	29	2.0	29	96	0	105	42	17	1	38	1.60
62084087--62084210	39	3.2	39	91	0	203	31	20	26	21	1.98
62084086--62084240	78	2.0	76	82	5	186	29	21	27	21	1.98
62093553--62093674	27	4.5	26	79	11	88	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62093581--62093674	27	3.5	26	79	5	89	20	18	24	37	1.94
62100326--62100389	21	3.0	21	79	0	65	20	34	25	20	1.96
62103642--62103848	40	5.2	40	75	6	179	25	27	22	25	2.00
62103664--62103848	80	2.3	81	83	4	214	24	27	22	25	2.00
62113513--62113887	47	8.0	47	96	0	669	32	8	29	29	1.87
62113828--62113944	57	2.1	57	85	0	153	29	9	31	29	1.88
62115961--62116106	43	3.4	43	100	0	292	22	15	35	26	1.94
62116088--62116161	29	2.6	29	89	4	105	25	16	32	25	1.96
62116470--62116626	40	3.9	40	78	7	140	26	22	26	24	2.00
62117905--62118089	40	4.6	40	79	6	176	24	27	23	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344