genome.fa.s10.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  123  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41665475--41665517	20	2.2	20	82	0	50	34	2	6	55	1.39
41675420--41675586	46	3.6	46	77	12	162	22	19	28	30	1.98
41675413--41675583	93	1.8	93	87	2	254	22	19	28	29	1.98
41682996--41683118	46	2.7	46	84	0	156	21	21	26	30	1.98
41692295--41692323	15	2.0	15	93	6	51	0	13	0	86	0.58
41698557--41698651	41	2.3	43	85	7	124	30	24	16	28	1.97
41698519--41698652	43	3.2	43	74	8	121	29	23	15	32	1.95
41698557--41698677	43	2.9	43	80	7	97	32	23	14	29	1.94
41700431--41700554	9	14.0	9	78	8	103	44	18	1	35	1.60
41700449--41700554	45	2.4	45	92	3	171	44	17	1	35	1.60
41706365--41706519	27	5.8	27	84	3	170	38	15	12	32	1.86
41706478--41706533	27	2.1	27	83	6	69	37	17	16	28	1.91
41706368--41706533	81	2.1	80	82	5	201	39	15	13	31	1.86
41710614--41710682	24	2.9	24	85	8	88	8	18	17	55	1.67
41716102--41716180	42	1.9	42	86	2	115	26	15	26	31	1.95
41721188--41721254	30	2.3	29	94	2	116	25	14	25	34	1.94
41729401--41729536	43	3.2	43	71	15	138	25	27	16	30	1.97
41732774--41733096	47	6.8	47	89	2	475	31	8	30	29	1.86
41732774--41733041	96	2.8	92	95	1	419	32	7	29	30	1.85
41732774--41733096	143	2.3	141	88	3	475	31	8	30	29	1.86
41735119--41735448	43	7.7	43	95	0	588	24	16	32	26	1.96
41735537--41735734	40	4.9	40	90	2	299	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41735537--41735777	40	6.0	40	87	2	286	26	20	28	24	1.99
41739597--41739919	47	6.8	47	89	3	468	31	8	30	29	1.86
41739597--41739864	96	2.8	92	95	1	419	32	7	29	30	1.85
41739597--41739919	143	2.3	141	88	4	468	31	8	30	29	1.86
41741717--41741759	22	2.0	22	85	0	59	6	23	2	67	1.27
41742996--41743107	27	4.1	27	84	7	138	15	24	23	37	1.93
41742996--41743107	54	2.1	54	88	3	163	15	24	23	37	1.93
41751952--41752011	27	2.3	26	85	2	75	35	20	23	21	1.96
41752397--41752510	27	4.2	27	86	0	165	23	20	18	37	1.94
41761655--41761834	45	4.0	45	91	0	288	22	22	28	26	1.99
41768778--41768969	49	3.9	49	83	2	242	27	17	25	29	1.98
41768778--41768956	98	1.8	99	90	1	288	27	17	25	29	1.97
41770669--41770721	14	3.8	14	84	0	70	39	3	32	24	1.73
41770669--41770730	28	2.2	28	88	0	88	37	3	32	27	1.73
41775734--41775816	6	13.5	6	75	14	80	49	15	16	18	1.80
41775737--41775816	31	2.6	31	91	0	124	48	16	17	17	1.81
41775741--41775813	25	2.9	25	80	15	89	47	16	17	17	1.82
41776033--41776084	27	2.0	26	84	3	68	34	21	26	17	1.95
41776319--41776667	27	12.9	27	83	0	392	41	5	20	32	1.75
41776319--41776667	54	6.5	54	87	0	437	41	5	20	32	1.75
41776671--41776820	27	5.6	27	81	6	142	30	8	21	40	1.83
41776680--41776845	54	3.1	54	78	6	158	30	11	19	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41776663--41776812	81	1.9	81	81	2	185	32	9	20	38	1.84
41778693--41778774	6	13.3	6	71	19	62	48	14	17	19	1.81
41778704--41778774	31	2.3	31	92	0	115	49	14	16	19	1.80
41779276--41779766	27	18.2	26	80	7	376	40	6	21	31	1.77
41779276--41779739	54	8.6	54	86	3	533	41	5	21	31	1.76
41779276--41779766	81	6.1	81	83	2	556	40	6	21	31	1.77
41779734--41779885	27	5.6	27	82	6	164	31	8	20	39	1.83
41781970--41782141	93	1.8	93	89	0	272	27	27	21	22	1.99
41781963--41782134	46	3.7	46	77	10	179	29	28	20	22	1.98
41782014--41782157	46	3.1	45	72	18	127	29	27	20	23	1.99
41784534--41784574	15	2.7	15	78	14	57	60	9	17	12	1.57
41791787--41791825	15	2.4	17	87	12	55	5	17	2	74	1.12
41796074--41796124	20	2.7	19	82	14	54	41	0	21	37	1.54
41796792--41796914	46	2.6	48	85	2	160	30	19	29	21	1.97
41796935--41797064	49	2.6	49	76	7	122	29	23	26	20	1.99
41808972--41809149	27	6.6	27	84	3	205	29	28	15	26	1.96
41808993--41809148	82	1.9	81	88	3	233	29	28	15	26	1.96
41817004--41817181	27	6.6	27	84	3	205	29	28	15	26	1.96
41817025--41817180	82	1.9	81	88	3	233	29	28	15	26	1.96
41825028--41825205	27	6.6	27	84	3	205	29	28	15	26	1.96
41825049--41825204	82	1.9	81	88	3	233	29	28	15	26	1.96
41831387--41831537	82	1.9	81	85	4	214	27	17	27	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41831387--41831542	27	5.7	27	81	6	154	27	16	28	27	1.97
41831386--41831563	27	6.6	27	79	5	144	26	16	28	28	1.97
41831379--41831563	82	2.3	81	77	2	201	27	16	28	28	1.97
41836371--41836548	27	6.6	27	84	3	205	29	28	15	26	1.96
41836392--41836547	82	1.9	81	88	3	233	29	28	15	26	1.96
41836541--41836580	19	2.1	19	100	0	80	30	10	15	45	1.78
41841584--41841662	37	2.1	37	86	4	106	25	29	18	26	1.98
41841781--41842271	47	10.4	47	94	0	820	29	29	8	32	1.88
41841781--41842267	237	2.1	237	94	0	843	29	28	9	32	1.88
41844722--41844762	19	2.1	20	95	4	75	70	4	24	0	1.06
41854385--41854505	46	2.6	44	83	7	127	32	17	27	23	1.96
41854568--41854698	49	2.7	49	82	7	167	26	22	29	21	1.99
41856065--41856137	37	2.0	37	91	2	121	21	12	28	36	1.90
41858567--41858667	24	4.2	24	90	0	157	34	2	41	20	1.68
41860102--41860212	27	4.1	27	82	7	120	19	24	19	36	1.95
41879858--41880114	55	4.8	53	79	11	235	36	16	24	22	1.94
41879865--41880065	108	1.8	110	87	4	300	35	16	25	22	1.95
41880021--41880114	49	1.9	49	89	4	145	38	14	23	23	1.92
41880304--41880334	16	1.9	16	93	0	53	41	0	22	35	1.54
41887588--41887794	55	3.8	52	79	8	220	36	15	24	22	1.94
41887910--41887957	23	2.0	24	92	4	80	45	10	22	20	1.81
41892535--41892659	47	2.6	48	83	1	153	31	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41894992--41895018	13	2.1	13	100	0	54	37	7	22	33	1.82
41898645--41898808	39	4.1	39	87	9	240	20	24	30	24	1.99
41898645--41898798	82	1.9	82	93	2	265	22	25	29	22	1.99
41901134--41901235	29	3.6	29	87	1	143	29	34	13	22	1.93
41904354--41904387	18	1.9	18	88	5	52	29	14	14	41	1.86
41905503--41905626	29	4.4	28	80	5	142	33	29	12	25	1.92
41905684--41905717	18	1.9	18	88	5	52	20	41	23	14	1.89
41908162--41908195	18	1.9	18	88	5	52	29	14	14	41	1.86
41909311--41909434	29	4.4	28	80	5	142	33	29	12	25	1.92
41909492--41909525	18	1.9	18	88	5	52	20	41	23	14	1.89
41910913--41910952	15	2.7	15	88	0	62	17	17	10	55	1.69
41914036--41914119	27	3.1	27	89	3	125	21	26	21	30	1.98
41914158--41914410	54	4.6	54	78	3	238	32	10	19	37	1.85
41914158--41914395	81	2.9	82	77	7	232	32	10	18	38	1.85
41914158--41914410	27	9.3	27	78	5	204	32	10	19	37	1.85
41914389--41914612	27	8.3	27	85	2	261	40	7	21	30	1.81
41914605--41914694	27	3.3	27	81	3	101	32	11	16	40	1.84
41914389--41914637	54	4.6	54	74	7	209	39	8	21	30	1.82
41914624--41914703	27	2.9	27	84	1	97	33	10	15	41	1.80
41916052--41916116	28	2.3	28	89	0	103	29	23	7	40	1.82
41919544--41919674	48	2.8	48	84	1	174	30	15	24	29	1.95
41919638--41919714	38	2.0	38	89	0	118	29	14	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41927290--41927400	27	4.2	26	85	10	143	37	22	24	15	1.93
41927290--41927400	54	2.1	53	88	5	161	37	22	24	15	1.93
41927893--41929143	623	2.0	624	98	0	2443	31	13	25	30	1.93
41930090--41930274	40	4.6	39	82	6	203	24	22	27	25	2.00
41930090--41930307	79	2.8	80	83	6	248	26	21	27	25	1.99
41931397--41931581	79	2.3	81	83	7	227	24	22	27	24	2.00
41931398--41931581	40	4.6	40	82	9	207	25	22	27	24	2.00
41931450--41931614	79	2.1	79	83	6	201	26	21	27	24	1.99
41934664--41934845	79	2.3	81	82	7	212	24	27	22	25	2.00
41934664--41934845	40	4.6	40	82	6	210	24	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344