genome.fa.s10.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  125  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42337252--42337421	93	1.8	93	91	2	279	21	20	30	27	1.98
42355488--42355577	34	2.6	34	84	6	112	23	26	24	25	2.00
42361957--42362089	55	2.4	54	77	6	135	39	18	21	21	1.93
42361949--42362152	53	3.8	53	75	5	167	38	17	23	21	1.93
42367736--42367939	53	3.8	53	76	4	158	39	17	21	22	1.92
42376223--42376442	40	5.6	40	90	3	340	22	23	26	28	1.99
42376223--42376442	78	2.8	79	91	4	347	22	23	26	28	1.99
42380154--42380321	47	3.6	46	77	8	153	25	28	18	27	1.98
42383012--42383092	33	2.4	34	77	8	94	28	23	18	29	1.98
42383403--42383455	26	2.0	26	82	7	63	22	16	20	39	1.92
42384695--42384800	24	4.4	23	87	7	131	19	36	5	37	1.76
42391153--42391325	46	3.7	46	77	10	199	30	27	19	22	1.98
42391158--42391328	93	1.8	93	93	0	297	29	28	19	22	1.98
42394417--42394560	46	3.1	46	67	17	111	29	28	19	22	1.98
42405422--42405481	30	2.0	30	83	6	77	30	25	8	36	1.85
42406396--42406550	46	3.3	46	95	0	265	20	27	24	28	1.99
42406760--42406788	13	2.2	13	100	0	58	55	13	0	31	1.39
42413769--42413794	13	2.0	13	100	0	52	53	15	0	30	1.42
42415441--42415498	30	1.9	30	89	0	89	27	25	12	34	1.91
42421758--42421880	43	2.9	42	71	9	106	21	19	25	33	1.97
42440491--42440804	48	6.4	47	85	10	382	26	29	8	35	1.86
42440513--42440778	148	1.8	142	88	8	394	25	30	9	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42442117--42442187	1	71.0	1	97	0	133	98	0	1	0	0.11
42443814--42443965	27	5.6	27	92	3	232	27	13	28	30	1.94
42443814--42443965	55	2.8	55	92	0	241	27	13	28	30	1.94
42451904--42452055	27	5.6	27	92	3	232	27	13	28	30	1.94
42451904--42452055	55	2.8	55	92	0	241	27	13	28	30	1.94
42454020--42454207	49	3.8	49	85	2	259	26	19	25	28	1.98
42454015--42454207	100	1.9	100	93	0	332	26	19	25	28	1.99
42456489--42456527	21	1.9	20	84	5	51	12	41	28	17	1.87
42461869--42461985	55	2.1	55	85	3	155	24	29	30	15	1.96
42465421--42465532	27	4.2	26	85	7	143	37	23	24	15	1.93
42465421--42465532	54	2.1	54	88	3	163	37	23	24	15	1.93
42466966--42467022	24	2.4	24	100	0	114	29	36	0	33	1.58
42475242--42475419	27	6.6	27	84	3	196	29	28	15	26	1.96
42475263--42475418	82	1.9	81	88	3	233	29	28	15	26	1.96
42480131--42480235	27	3.9	27	84	9	133	36	20	24	18	1.95
42480124--42480235	54	2.1	54	89	3	172	36	21	24	17	1.95
42489778--42489949	93	1.8	95	86	5	251	29	16	30	23	1.96
42489774--42489948	47	3.7	47	76	15	191	29	17	30	22	1.97
42492239--42492369	67	2.0	67	92	0	217	30	31	18	19	1.96
42494898--42494938	18	2.3	18	87	4	66	14	43	29	12	1.82
42496178--42496350	27	6.4	27	74	9	165	26	22	8	42	1.81
42496175--42496314	56	2.6	55	84	5	169	29	21	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42501780--42501812	16	2.1	16	94	0	57	54	3	0	42	1.15
42502244--42502427	29	6.3	29	78	7	183	22	26	11	40	1.87
42502265--42502338	30	2.5	30	86	2	96	22	29	9	37	1.86
42502244--42502367	59	2.1	59	86	4	171	20	27	12	40	1.87
42502244--42502429	88	2.1	89	85	5	245	22	25	11	40	1.88
42502327--42502464	59	2.4	57	83	11	181	24	23	10	41	1.86
42502356--42502455	29	3.4	29	81	2	128	26	24	9	41	1.84
42502265--42502455	88	2.2	88	81	5	208	24	26	10	39	1.87
42509896--42509926	16	1.9	16	100	0	62	58	9	6	25	1.54
42520392--42520546	43	3.6	42	76	6	159	32	25	16	25	1.96
42522800--42522830	14	2.3	14	94	5	55	45	19	6	29	1.75
42525338--42525390	25	2.1	25	89	0	79	26	18	20	33	1.96
42528918--42529047	43	3.0	43	74	12	115	31	25	18	24	1.97
42535535--42535696	74	2.2	75	81	5	193	51	12	13	22	1.74
42535650--42535743	48	2.0	48	82	0	116	54	13	10	21	1.69
42536617--42536980	184	2.0	183	81	1	433	27	19	23	29	1.98
42538037--42538103	30	2.2	30	86	0	89	25	31	23	19	1.98
42538937--42539048	43	2.6	42	79	5	136	27	24	16	32	1.96
42546199--42546381	39	4.7	39	82	1	188	29	28	18	23	1.97
42551964--42552022	31	2.0	29	84	12	77	30	27	15	27	1.96
42555703--42555990	27	10.7	27	82	3	292	27	15	18	38	1.91
42555718--42556017	81	3.7	80	80	7	336	27	16	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42564267--42564417	27	5.6	26	81	4	140	26	16	27	29	1.97
42564267--42564417	82	1.9	81	84	4	205	26	16	27	29	1.97
42564266--42564443	27	6.6	27	80	5	126	26	15	27	30	1.96
42566438--42566715	27	10.7	27	79	8	240	26	16	18	38	1.92
42566438--42566686	54	4.8	54	80	9	270	26	16	18	37	1.92
42566587--42566678	22	3.9	23	83	11	116	30	19	20	29	1.97
42568526--42568786	39	6.7	40	86	7	308	24	22	28	24	2.00
42576539--42576799	77	3.3	79	84	7	309	24	22	27	24	2.00
42576539--42576799	40	6.7	40	85	6	295	24	22	27	24	2.00
42591355--42591577	40	5.6	40	84	5	254	26	26	21	24	2.00
42591355--42591577	79	2.8	79	84	5	252	26	26	21	24	2.00
42599383--42599574	50	3.9	49	82	5	208	25	18	27	28	1.98
42605976--42606201	50	4.5	49	75	11	190	23	18	26	31	1.98
42608311--42608336	13	2.0	13	100	0	52	7	0	30	61	1.24
42612434--42612525	48	1.9	48	93	0	157	32	14	22	30	1.93
42612487--42612628	38	3.5	37	71	19	131	30	14	24	30	1.94
42612404--42612648	86	2.9	86	86	0	330	30	15	24	29	1.96
42612574--42612650	38	2.0	38	84	0	100	28	15	27	28	1.96
42615881--42615920	15	2.7	15	84	0	53	17	17	15	50	1.79
42618636--42618834	38	5.0	38	78	10	209	28	16	24	30	1.96
42620001--42620043	19	2.3	19	100	0	86	16	25	20	37	1.93
42625231--42625262	16	2.0	16	93	0	55	25	3	12	59	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42626266--42626334	27	2.5	28	80	15	74	34	23	24	17	1.96
42626441--42626503	26	2.3	26	83	5	72	30	11	25	33	1.90
42643097--42643230	27	5.0	26	84	4	142	36	22	22	18	1.95
42643389--42643453	22	3.0	21	76	13	69	33	23	23	20	1.97
42643841--42644017	27	6.6	27	84	0	219	24	22	19	32	1.97
42644663--42644861	6	32.3	6	73	17	151	48	14	18	19	1.81
42644663--42644861	25	8.1	24	77	13	151	48	14	18	19	1.81
42644690--42644861	31	5.6	30	73	14	154	47	14	18	19	1.82
42644684--42644861	37	4.8	37	78	12	131	47	14	18	19	1.82
42644695--42644860	62	2.7	62	91	0	260	47	15	18	18	1.83
42645002--42645062	31	1.9	32	86	3	88	36	16	24	22	1.94
42645078--42645129	27	2.0	26	84	3	68	34	21	26	17	1.95
42645374--42645598	27	8.3	27	79	7	199	24	19	20	36	1.95
42645374--42645598	54	4.2	54	80	4	247	24	19	20	36	1.95
42645388--42645596	81	2.6	81	88	0	301	24	18	20	35	1.95
42645646--42645705	27	2.2	27	90	0	93	31	8	16	43	1.78
42645688--42645955	108	2.5	108	90	0	419	31	9	19	39	1.84
42645708--42645948	27	8.9	27	81	1	295	31	9	19	39	1.84
42645688--42645948	54	4.8	54	88	0	380	31	9	19	39	1.84
42646818--42646919	27	3.8	27	90	0	150	28	14	17	39	1.89
42646903--42646975	27	2.7	26	72	8	65	30	5	24	39	1.78
42649053--42649141	43	2.1	42	81	6	99	30	25	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42651344--42651373	15	2.0	15	93	0	51	13	0	30	56	1.37
42655756--42656069	81	3.9	81	82	2	335	38	22	8	29	1.84
42655756--42656070	27	11.7	27	79	4	278	38	22	8	29	1.84
42656083--42656206	27	4.6	27	82	3	135	33	17	23	25	1.96
42656633--42656697	22	3.0	22	77	8	60	21	23	21	33	1.97
42656863--42656957	27	3.5	27	85	8	113	20	23	20	36	1.95
42657094--42657203	31	3.5	31	88	1	139	20	17	12	50	1.78
42657117--42657203	6	14.2	6	73	13	61	20	18	13	47	1.83
42657157--42657213	12	4.7	12	77	16	55	22	19	12	45	1.83
42657871--42657947	37	2.1	37	100	0	154	35	16	5	42	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344