genome.fa.s10.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  148  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49281600--49281704	49	2.1	49	91	0	165	31	24	16	27	1.96
49283333--49283366	3	11.3	3	87	0	50	2	29	0	67	1.05
49283881--49283918	18	2.1	18	85	9	51	28	18	31	21	1.97
49291479--49291590	42	2.7	42	83	2	145	30	23	14	32	1.94
49300059--49300083	12	2.1	12	100	0	50	40	0	24	36	1.55
49303908--49304105	50	4.0	50	79	2	227	31	10	17	40	1.82
49303907--49304118	100	2.1	100	84	1	282	32	11	16	40	1.84
49305524--49305701	27	6.6	27	84	3	205	29	28	15	26	1.96
49305545--49305700	82	1.9	81	88	3	233	29	28	15	26	1.96
49309204--49309381	46	3.8	47	77	12	170	29	21	28	20	1.98
49316820--49317035	93	2.3	94	81	10	246	29	18	28	23	1.97
49316814--49317036	47	4.8	47	78	8	188	30	17	28	23	1.97
49316772--49317037	140	1.9	141	84	3	358	29	18	28	23	1.98
49324150--49324334	50	3.7	50	86	4	232	27	17	24	31	1.97
49324572--49324605	16	2.1	17	88	5	52	35	11	11	41	1.78
49330829--49330944	50	2.3	50	92	2	189	26	19	24	29	1.99
49334052--49334777	361	2.0	362	99	0	1436	27	23	22	26	2.00
49348574--49348763	61	2.9	64	74	17	185	40	3	7	48	1.49
49348638--49348750	61	1.9	58	92	5	190	39	2	6	51	1.41
49348638--49348771	58	2.2	61	87	8	188	40	2	7	50	1.43
49350345--49350461	20	5.9	20	70	2	83	13	26	18	41	1.88
49350356--49350462	40	2.7	39	72	7	99	14	26	18	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49351485--49351532	25	2.0	24	83	4	60	64	6	0	29	1.18
49352720--49352813	46	2.0	47	86	10	131	24	23	17	35	1.95
49372306--49372490	40	4.7	40	82	6	216	24	27	23	24	2.00
49372306--49372490	79	2.3	81	80	8	209	24	27	23	24	2.00
49374978--49375041	31	2.1	31	93	0	110	23	23	15	37	1.93
49375254--49375351	23	4.2	23	88	6	135	27	22	22	27	1.99
49375402--49375468	20	3.3	20	89	0	107	32	22	11	32	1.90
49378139--49378230	42	2.2	42	86	0	121	33	19	14	32	1.92
49378363--49378550	26	7.3	26	83	3	231	29	22	19	28	1.98
49378603--49378666	20	3.2	20	88	4	94	31	17	10	40	1.84
49379376--49379439	27	2.4	27	81	5	76	21	25	17	35	1.95
49379470--49380183	27	26.4	27	77	5	224	32	8	21	37	1.84
49379742--49379869	55	2.3	55	80	7	152	29	9	20	40	1.84
49385330--49385464	40	3.4	40	97	0	252	29	30	19	20	1.97
49389538--49389688	42	3.6	42	79	4	153	30	14	23	31	1.94
49393742--49393796	18	3.2	17	73	19	51	3	36	0	60	1.15
49395023--49395104	27	3.0	27	80	3	94	21	24	18	35	1.96
49396487--49396621	39	3.4	40	87	3	184	26	24	22	26	2.00
49404529--49404684	40	3.9	40	82	5	181	23	26	23	25	2.00
49409192--49409246	18	3.2	17	76	19	60	3	34	0	61	1.13
49410309--49410366	26	2.2	27	78	12	66	34	27	12	25	1.91
49410468--49410533	28	2.4	28	89	5	98	16	22	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49410480--49410553	28	2.6	28	83	8	87	22	24	13	39	1.90
49416232--49416416	40	4.6	39	79	5	176	25	21	26	26	2.00
49416288--49416449	79	2.1	79	80	6	177	27	19	26	27	1.99
49424409--49424590	40	4.6	40	81	8	194	24	20	28	26	1.99
49424409--49424590	79	2.3	81	83	7	230	24	20	28	26	1.99
49424459--49424623	79	2.1	79	84	6	210	26	20	27	26	1.99
49428072--49428120	11	4.5	11	76	5	55	34	16	18	30	1.93
49435187--49435417	54	4.3	54	85	2	277	39	19	8	32	1.82
49435196--49435401	27	7.6	27	85	1	270	40	20	8	30	1.82
49435394--49435473	27	2.9	27	77	14	90	42	13	7	36	1.73
49435196--49435425	81	2.8	80	81	7	250	41	19	8	30	1.80
49435222--49435494	108	2.5	110	78	5	243	40	17	8	32	1.80
49435500--49435625	27	4.7	27	83	3	173	29	23	6	40	1.79
49435500--49435625	54	2.3	54	90	2	191	29	23	6	40	1.79
49435630--49435985	27	13.3	27	84	2	333	36	20	17	25	1.94
49436413--49436477	22	3.0	22	80	8	78	20	23	23	33	1.97
49436636--49436734	27	3.7	26	83	5	99	20	23	20	36	1.95
49436874--49437012	6	22.3	6	65	25	58	21	16	13	48	1.81
49436874--49437003	31	4.2	31	88	1	179	21	16	13	48	1.80
49440618--49440738	41	2.8	43	74	13	117	23	15	28	33	1.95
49444707--49444761	27	2.0	27	100	0	110	32	18	14	34	1.91
49445353--49445497	6	23.8	6	73	18	122	48	13	17	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49445615--49445680	27	2.5	26	82	7	78	39	21	22	16	1.92
49445634--49445688	27	2.0	27	86	6	76	36	20	25	18	1.94
49445639--49445696	27	2.1	27	84	6	73	36	27	20	15	1.93
49445999--49446081	27	3.1	26	86	5	103	37	20	21	20	1.95
49446288--49446467	27	6.7	27	88	0	234	25	20	18	35	1.95
49446480--49446862	27	14.2	27	83	4	441	40	9	22	27	1.84
49446480--49446862	81	4.7	81	87	3	504	40	9	22	27	1.84
49465829--49465890	28	2.2	28	82	5	72	37	22	20	19	1.95
49477737--49477933	50	3.9	50	83	1	243	27	25	19	26	1.99
49477750--49477933	101	1.8	99	87	2	269	28	25	19	26	1.99
49482202--49482304	44	2.4	42	87	7	154	21	20	27	31	1.98
49483083--49483129	22	2.1	22	88	7	69	21	0	29	48	1.50
49485065--49485247	46	4.0	46	91	0	267	25	31	9	33	1.87
49485264--49485339	22	3.3	22	66	28	59	25	28	11	34	1.91
49485218--49485598	47	8.1	47	92	1	568	26	28	10	34	1.90
49485218--49485598	187	2.0	188	89	1	577	26	28	10	34	1.90
49485218--49485600	140	2.7	140	88	2	410	26	28	10	34	1.90
49496136--49496302	70	2.4	70	89	4	257	29	14	26	29	1.96
49499993--49500169	55	3.2	55	87	0	237	31	28	12	27	1.93
49499993--49500144	27	5.6	27	91	3	223	30	28	13	28	1.94
49504712--49504885	46	3.8	46	78	11	194	29	28	20	21	1.98
49504720--49504889	92	1.8	93	92	1	288	28	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49507279--49507338	30	2.0	30	90	0	93	55	16	18	10	1.69
49507281--49507343	15	4.2	15	74	8	65	55	15	17	11	1.68
49510269--49510443	46	3.8	45	75	17	162	30	28	18	22	1.97
49510277--49510447	93	1.8	93	88	2	263	30	28	19	22	1.98
49512253--49512417	43	3.9	41	75	12	145	24	17	24	33	1.96
49514566--49514688	41	3.0	41	90	0	201	26	27	22	23	2.00
49514924--49515317	27	14.7	27	81	5	309	30	9	19	40	1.84
49514924--49515317	53	7.4	54	75	9	304	30	9	19	40	1.84
49515309--49515406	27	3.7	26	81	10	112	27	23	17	31	1.97
49522340--49522468	46	2.8	46	92	2	197	30	28	21	19	1.98
49532643--49532766	40	3.1	40	94	1	205	23	21	28	26	1.99
49536317--49536476	70	2.3	70	84	0	203	30	16	24	28	1.97
49539240--49539346	29	3.8	28	77	6	117	28	15	30	24	1.96
49551069--49551333	46	5.7	47	78	10	260	26	20	31	21	1.98
49551069--49551333	140	1.9	139	82	7	331	26	20	31	21	1.98
49554924--49555097	46	3.8	45	74	8	163	29	28	19	22	1.98
49554932--49555102	92	1.8	93	88	1	263	28	29	19	22	1.98
49557486--49557574	30	3.0	30	80	8	101	57	15	16	10	1.65
49557486--49557565	15	5.4	15	80	7	92	58	13	17	10	1.62
49557497--49557574	15	5.2	15	78	9	79	56	15	16	11	1.67
49573009--49573173	87	1.9	87	88	5	253	36	23	15	24	1.93
49577351--49577403	27	2.0	26	85	3	70	13	16	24	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49577711--49577787	29	2.7	29	93	0	127	27	29	18	24	1.98
49577678--49577787	58	1.9	57	85	3	150	26	30	16	27	1.97
49596754--49596788	18	2.0	18	88	5	54	28	17	11	42	1.83
49597888--49598012	29	4.4	28	83	5	151	29	29	14	26	1.95
49597895--49598004	58	1.9	58	88	1	168	29	30	15	24	1.96
49598593--49598717	29	4.4	28	83	5	151	29	29	14	26	1.95
49598600--49598709	58	1.9	58	88	1	168	29	30	15	24	1.96
49597663--49599067	705	2.0	705	99	0	2783	28	27	15	27	1.96
49600943--49601182	121	2.0	122	98	0	464	44	15	5	34	1.70
49603371--49603434	30	2.2	30	91	2	103	35	25	14	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344