genome.fa.s10.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  145  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48354173--48354625	47	9.6	47	90	1	681	29	29	8	32	1.86
48359604--48359812	40	5.6	40	78	16	223	23	26	24	25	2.00
48367669--48367820	40	3.8	40	92	1	243	23	29	23	23	1.99
48379797--48379885	35	2.5	34	83	8	115	40	17	10	31	1.83
48387463--48387586	35	3.5	35	89	1	167	41	20	8	29	1.83
48390707--48390740	10	3.3	10	84	8	50	41	0	11	47	1.40
48390697--48393495	592	4.7	587	82	4	3229	34	14	13	38	1.85
48392707--48392746	15	2.7	15	80	3	55	50	0	5	45	1.23
48393074--48393107	10	3.3	10	88	8	50	41	0	8	50	1.34
48401229--48401406	27	6.6	27	83	3	196	29	28	15	27	1.96
48401250--48401405	82	1.9	81	86	3	224	28	28	15	27	1.96
48409141--48409318	27	6.6	27	83	3	196	29	28	15	27	1.96
48409162--48409317	82	1.9	81	86	3	224	28	28	15	27	1.96
48418678--48418982	40	7.7	40	92	4	458	26	27	20	25	1.99
48434387--48434554	46	3.6	46	80	8	164	25	30	18	25	1.98
48440239--48440264	13	2.0	13	100	0	52	61	7	0	30	1.24
48441805--48441906	29	3.6	29	72	7	91	28	32	16	22	1.96
48441778--48441938	57	2.8	57	86	0	214	29	31	18	21	1.97
48441778--48441934	28	5.6	27	71	8	107	29	30	18	21	1.97
48441966--48442339	40	9.4	40	95	0	658	25	27	22	24	2.00
48443782--48443872	46	2.0	46	86	0	128	27	30	6	35	1.82
48443886--48444131	47	5.2	47	93	0	411	25	26	11	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48443934--48444010	22	3.4	22	70	22	68	24	27	12	35	1.92
48443934--48444105	22	7.4	20	65	26	58	25	27	12	34	1.92
48447780--48447985	40	5.2	40	91	2	301	23	22	26	27	2.00
48450544--48450573	15	2.0	15	93	0	51	50	33	13	3	1.58
48455469--48455588	56	2.1	56	96	0	222	45	9	22	22	1.80
48456715--48456897	79	2.3	81	82	7	214	24	22	27	25	2.00
48456715--48456899	40	4.6	41	82	7	213	24	22	28	25	1.99
48456754--48456924	79	2.2	79	78	8	179	27	20	26	25	1.99
48462412--48462579	46	3.6	46	79	9	173	27	19	30	22	1.98
48467982--48468007	9	2.9	9	100	0	52	11	0	23	65	1.25
48468902--48469028	47	2.7	45	76	8	128	29	16	27	25	1.97
48471222--48471340	29	4.2	29	80	4	118	30	13	31	25	1.94
48472411--48472445	18	2.0	18	88	5	54	37	20	14	28	1.91
48475532--48475570	20	1.9	21	84	5	53	33	7	0	58	1.26
48488587--48488699	27	4.2	28	84	5	144	33	19	24	22	1.97
48488587--48488700	55	2.1	54	87	6	169	34	19	24	21	1.96
48494588--48494617	16	1.9	15	93	6	51	33	23	0	43	1.54
48496657--48496847	39	4.9	39	85	3	174	19	23	29	27	1.98
48499557--48499589	4	8.2	4	100	0	66	75	0	24	0	0.80
48502256--48502460	40	5.2	40	85	2	263	26	26	22	24	2.00
48512125--48512215	47	1.9	47	90	0	146	30	23	18	27	1.98
48515511--48515670	57	2.8	56	79	1	176	30	19	6	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48516544--48516619	38	2.0	37	84	2	98	34	10	15	39	1.82
48518955--48519047	19	5.1	19	72	12	77	29	9	13	47	1.75
48518929--48519057	54	2.4	54	92	0	213	32	9	14	43	1.78
48520413--48520486	18	4.3	17	77	14	71	35	22	1	40	1.63
48520413--48520486	17	4.3	17	81	8	78	35	22	1	40	1.63
48521666--48521713	13	3.3	14	75	18	53	58	2	2	37	1.22
48522116--48522175	3	20.3	3	77	3	59	63	3	0	33	1.11
48522640--48522732	48	1.9	48	91	0	150	20	17	17	45	1.86
48524227--48524274	26	2.0	24	81	18	57	66	4	25	4	1.27
48524472--48524511	21	1.9	21	89	0	62	47	5	15	32	1.66
48529498--48529605	26	4.2	26	89	0	171	32	5	24	37	1.78
48535027--48535058	4	8.0	4	100	0	64	75	0	0	25	0.81
48536418--48536470	23	2.4	22	76	20	56	9	18	1	69	1.25
48540956--48541121	45	3.7	44	69	7	111	33	27	15	23	1.94
48541234--48541281	24	2.0	24	100	0	96	25	29	16	29	1.97
48541331--48541369	14	2.6	16	88	8	55	35	20	2	41	1.66
48542099--48542123	12	2.1	12	100	0	50	68	0	24	8	1.16
48543708--48543747	21	1.9	21	94	0	71	37	10	12	40	1.77
48543800--48543928	54	2.4	54	82	2	170	31	11	13	44	1.79
48543981--48544025	19	2.4	19	85	7	56	24	2	20	53	1.57
48543990--48544026	9	3.9	10	82	10	51	24	0	18	56	1.41
48544642--48544734	48	1.9	48	91	0	150	22	19	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48545211--48545268	28	2.1	28	96	0	107	46	3	18	31	1.66
48552690--48552848	35	4.5	35	80	0	174	28	7	20	43	1.79
48576855--48576882	14	2.0	14	100	0	56	35	7	28	28	1.84
48579808--48579922	29	4.0	28	80	8	124	27	27	15	28	1.96
48579799--48579909	58	1.9	57	85	1	150	27	28	16	27	1.97
48579981--48580014	18	1.9	18	88	5	52	20	38	23	17	1.93
48580133--48580184	16	3.3	16	86	2	70	9	17	21	51	1.73
48589040--48589282	40	6.1	41	88	5	329	23	21	27	26	1.99
48592039--48592096	30	1.9	30	100	0	116	43	13	10	32	1.78
48592536--48592852	47	6.6	47	70	19	185	27	18	29	24	1.98
48592536--48592706	46	3.7	44	81	11	164	27	19	30	22	1.98
48598084--48598108	9	2.8	9	100	0	50	12	0	20	68	1.21
48601287--48601404	29	4.1	29	81	4	107	30	12	30	26	1.93
48619554--48619578	9	2.8	9	100	0	50	8	0	24	68	1.16
48620466--48620591	46	2.7	47	78	18	138	28	18	27	25	1.98
48639864--48639976	27	4.2	28	81	3	117	34	18	23	23	1.96
48639871--48639977	55	2.0	54	87	5	153	34	16	24	24	1.95
48642974--48643019	1	46.0	1	100	0	92	0	0	0	100	0.00
48645693--48645722	16	1.9	15	93	6	51	33	23	0	43	1.54
48646033--48646210	51	3.5	51	90	2	261	27	23	21	27	1.99
48645920--48646316	50	7.9	50	82	2	359	30	25	17	25	1.98
48649214--48649244	15	2.1	15	93	0	53	51	19	16	12	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48652519--48652548	16	1.9	15	93	6	51	33	20	3	43	1.68
48652746--48653340	50	11.8	50	76	6	463	30	25	17	27	1.97
48652748--48653293	101	5.4	101	77	5	507	28	24	18	27	1.98
48657468--48657492	13	1.9	13	100	0	50	48	0	16	36	1.46
48659830--48660016	40	4.7	40	95	0	329	30	20	27	21	1.98
48666448--48666504	15	3.9	15	81	2	71	57	15	14	12	1.65
48670135--48670242	26	4.2	26	92	0	180	33	6	24	36	1.81
48677089--48677171	26	3.2	26	89	0	139	33	6	24	36	1.80
48682942--48683442	47	10.6	47	92	1	813	32	8	29	29	1.87
48682942--48683442	143	3.5	141	92	1	806	32	8	29	29	1.87
48682942--48683442	190	2.6	191	92	1	814	32	8	29	29	1.87
48683561--48683698	37	3.7	37	92	0	213	26	18	28	26	1.98
48684991--48685279	40	7.2	40	90	1	418	24	20	28	26	1.99
48689341--48689545	47	4.3	47	93	2	347	33	7	28	29	1.85
48689341--48689545	96	2.2	96	93	1	351	33	7	28	29	1.85
48693163--48693308	40	3.7	40	84	7	156	25	22	26	25	2.00
48693202--48693315	40	2.8	40	88	5	160	28	21	25	24	1.99
48695391--48695433	20	2.2	20	100	0	86	34	18	11	34	1.87
48697993--48698151	45	3.6	44	71	10	117	33	29	15	22	1.94
48698271--48698318	24	2.0	24	100	0	96	25	29	16	29	1.97
48698368--48698406	14	2.6	16	88	8	55	35	20	2	41	1.66
48699136--48699160	12	2.1	12	100	0	50	68	0	24	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48700710--48700882	46	3.7	46	79	10	208	21	20	27	29	1.98
48700707--48700877	93	1.8	93	93	0	297	21	21	28	28	1.98
48701107--48701144	19	2.0	20	85	15	53	36	0	23	39	1.55
48703534--48703573	21	1.9	21	94	0	71	37	10	12	40	1.77
48703626--48703702	35	2.2	35	88	0	109	32	12	11	42	1.80
48703788--48703832	19	2.4	19	85	7	56	24	2	20	53	1.57
48703797--48703833	9	3.9	10	82	10	51	24	0	18	56	1.41
48704449--48704541	48	1.9	48	88	0	141	22	18	16	43	1.88
48705018--48705075	28	2.1	28	100	0	116	44	3	20	31	1.68
48718082--48718354	27	10.1	27	87	0	341	35	19	19	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344