genome.fa.s10.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  142  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47468708--47468766	27	2.2	26	82	5	73	40	23	22	13	1.89
47469092--47469174	27	3.1	26	87	5	112	37	21	21	19	1.94
47469375--47469560	27	6.9	27	80	2	194	26	19	17	36	1.94
47469375--47469568	81	2.4	81	85	1	246	26	18	17	37	1.93
47469373--47469568	54	3.6	54	83	1	216	26	18	18	36	1.94
47469573--47469982	27	15.2	27	82	6	463	40	9	21	28	1.84
47469573--47469982	81	5.1	81	83	4	522	40	9	21	28	1.84
47479327--47479527	108	1.8	110	87	4	300	22	24	18	34	1.96
47479281--47479534	55	4.8	52	77	8	196	21	24	18	36	1.95
47484422--47484501	40	2.0	41	82	9	101	18	42	18	20	1.89
47486506--47486530	13	1.9	13	100	0	50	32	20	16	32	1.94
47487552--47487729	27	6.6	27	83	3	205	26	15	28	29	1.96
47487553--47487708	82	1.9	81	88	3	233	26	15	28	29	1.96
47487549--47487729	82	2.2	81	83	2	229	27	15	27	29	1.96
47495015--47495039	13	1.9	13	100	0	50	32	20	16	32	1.94
47496060--47496237	27	6.6	27	85	3	214	26	14	28	30	1.95
47496061--47496216	82	1.9	81	89	3	242	26	14	28	30	1.95
47496057--47496237	82	2.2	81	84	2	238	27	14	27	30	1.95
47498985--47499159	40	4.4	40	94	0	305	21	17	30	30	1.96
47498985--47499183	80	2.5	80	90	0	263	22	19	28	29	1.98
47499867--47499924	21	2.8	21	75	15	57	37	13	17	31	1.89
47499973--47500043	24	2.9	25	91	4	117	28	26	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47502591--47502715	62	2.0	62	92	0	205	32	20	15	32	1.93
47507239--47507297	30	2.0	29	84	15	77	59	6	13	20	1.57
47508164--47508241	38	2.1	38	92	0	129	16	30	0	52	1.44
47509467--47509513	19	2.5	19	76	10	51	72	4	2	21	1.12
47510685--47510741	28	2.0	28	100	0	114	29	10	24	35	1.89
47514612--47514642	11	2.8	11	95	0	53	25	3	0	70	1.02
47514601--47514642	22	1.9	22	85	9	59	26	4	0	69	1.08
47514893--47514975	27	3.2	26	76	13	89	31	3	0	65	1.10
47514868--47515013	64	2.3	64	78	15	158	28	5	2	64	1.27
47514853--47514950	36	2.7	36	74	15	85	29	4	1	65	1.18
47514894--47514969	9	8.6	9	69	13	50	31	2	0	65	1.06
47514909--47514994	12	6.8	12	73	20	59	31	5	0	62	1.18
47515227--47515292	22	3.2	20	76	17	64	39	4	0	56	1.20
47518206--47518378	46	3.7	46	76	15	158	29	28	20	21	1.98
47520161--47520249	30	3.0	30	79	11	94	56	15	17	10	1.67
47520161--47520243	15	5.6	14	73	10	58	55	16	18	9	1.68
47520172--47520249	15	5.2	15	75	9	70	55	15	17	11	1.69
47523163--47523338	46	3.8	46	79	12	189	30	30	19	20	1.97
47523171--47523342	93	1.8	93	91	0	281	29	30	19	20	1.97
47526649--47526678	8	3.8	8	100	0	60	90	0	0	10	0.47
47528151--47528235	7	12.0	7	76	15	61	77	0	20	2	0.88
47528160--47528217	5	9.8	6	74	22	52	79	0	18	1	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47528169--47528239	16	4.3	16	79	12	65	76	0	21	2	0.92
47529114--47529759	44	14.7	44	70	11	342	32	17	23	27	1.96
47529128--47529378	132	1.9	132	90	1	405	30	17	23	28	1.97
47529114--47529395	132	2.1	132	84	7	401	33	17	23	26	1.96
47529353--47529754	132	3.1	132	90	0	626	32	16	23	27	1.96
47529133--47529614	220	2.2	219	89	1	743	32	17	23	26	1.97
47529734--47529826	44	2.1	44	86	4	125	32	12	27	26	1.93
47529744--47530053	131	2.4	130	88	1	467	30	15	23	30	1.96
47531514--47531599	12	6.8	12	73	20	59	31	5	1	61	1.27
47531821--47531878	18	2.8	21	77	15	59	41	5	0	53	1.23
47535921--47535990	3	23.0	3	82	8	61	0	42	1	55	1.08
47536922--47536955	7	4.9	7	85	0	50	32	50	0	17	1.47
47536914--47536955	21	2.0	21	90	0	66	33	47	0	19	1.49
47536922--47536960	14	2.8	14	92	0	51	35	43	0	20	1.52
47536968--47536998	15	2.1	15	93	0	53	41	38	0	19	1.51
47537152--47537199	22	2.2	21	82	10	53	43	29	2	25	1.66
47537182--47537217	14	2.6	14	86	0	54	50	25	2	22	1.63
47537234--47537293	25	2.4	26	81	15	74	36	45	1	16	1.58
47537634--47537784	80	1.9	80	83	6	198	27	20	21	30	1.98
47539648--47539727	41	2.0	40	87	2	115	25	22	30	22	1.99
47539813--47539877	22	3.0	22	71	8	60	21	23	21	33	1.97
47543881--47544107	40	5.7	40	96	0	418	29	20	27	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47559953--47560156	40	5.1	40	81	8	238	25	26	21	25	2.00
47560000--47560151	79	1.9	80	86	6	220	26	26	20	26	1.99
47566433--47566521	44	2.0	44	97	0	169	26	16	10	46	1.79
47569370--47569592	47	4.7	47	91	1	331	32	8	30	27	1.88
47569417--47569495	25	3.3	25	61	10	65	32	5	29	32	1.79
47569711--47569789	37	2.1	37	90	0	122	24	18	31	25	1.98
47573238--47573285	19	2.6	19	90	3	80	37	2	12	47	1.53
47573309--47573387	41	1.9	41	97	0	149	30	7	16	45	1.75
47581024--47581193	35	4.9	35	81	4	184	37	15	22	23	1.93
47581772--47581865	19	5.2	19	76	15	83	38	8	15	37	1.79
47581822--47581846	5	5.0	5	100	0	50	40	0	20	40	1.52
47589550--47590013	44	10.6	44	72	10	240	31	17	24	26	1.97
47589558--47590000	132	3.4	132	91	0	683	31	17	24	26	1.97
47589944--47590036	44	2.1	44	92	4	152	34	16	24	24	1.95
47590023--47590737	205	3.5	205	92	0	1173	30	18	22	28	1.97
47590831--47590916	45	1.9	45	95	0	154	31	13	27	26	1.94
47591278--47591354	19	4.2	19	80	16	99	37	7	18	36	1.80
47591311--47591336	5	5.2	5	100	0	52	38	0	23	38	1.55
47592302--47592351	25	2.0	25	100	0	100	40	16	16	28	1.89
47594835--47594889	21	2.5	23	82	11	71	63	0	3	32	1.12
47594849--47594887	12	3.4	11	89	10	60	64	0	2	33	1.08
47594852--47594899	15	3.2	16	72	25	50	64	0	2	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47594826--47594901	23	3.7	20	73	17	59	63	0	2	34	1.09
47594926--47594981	25	2.3	24	79	11	62	60	1	1	35	1.17
47599828--47600018	30	6.3	29	76	10	168	26	28	10	35	1.89
47599828--47600018	60	3.2	58	78	8	195	26	28	10	35	1.89
47599824--47599992	60	2.8	61	81	3	207	27	28	9	34	1.88
47599719--47600019	61	5.1	61	69	11	194	24	27	10	37	1.89
47600370--47600433	31	2.1	31	100	0	128	29	39	9	21	1.85
47605145--47605447	83	3.6	84	83	5	398	48	10	8	32	1.69
47605419--47605648	88	2.6	87	80	6	232	40	11	12	35	1.80
47605701--47605866	87	1.9	87	86	4	237	43	10	13	31	1.78
47608682--47608742	30	2.0	30	93	0	104	19	47	1	31	1.59
47610082--47610177	31	3.1	31	92	0	147	51	22	2	23	1.59
47610092--47610145	18	3.3	18	67	32	57	57	20	0	22	1.41
47619430--47619482	26	2.0	27	88	7	81	35	1	3	58	1.27
47619432--47619488	28	2.2	27	81	12	66	36	1	5	56	1.32
47627148--47627331	50	3.7	50	83	1	217	29	26	18	25	1.98
47627148--47627331	101	1.8	99	85	2	260	29	26	18	25	1.98
47627577--47627630	27	2.0	27	88	0	81	38	12	7	40	1.72
47630211--47630314	26	4.0	26	96	0	190	31	6	25	35	1.82
47633117--47633141	13	1.9	13	100	0	50	52	0	0	48	1.00
47634013--47634055	21	2.1	21	86	4	61	18	16	32	32	1.93
47635566--47635599	13	2.6	13	90	0	50	35	8	17	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47636687--47636848	42	3.8	42	80	6	166	31	13	24	30	1.94
47643664--47643701	19	2.1	19	90	5	60	44	26	5	23	1.74
47651359--47651510	67	2.3	66	81	5	175	28	17	32	21	1.96
47655755--47655894	42	3.2	44	80	5	142	28	25	20	25	1.99
47661673--47662242	47	12.1	47	93	1	928	31	9	30	28	1.88
47662361--47662439	37	2.1	37	88	4	115	25	18	30	25	1.98
47678276--47678361	43	2.0	43	97	0	163	26	20	12	39	1.89
47686383--47686550	40	4.2	40	90	2	241	23	23	27	25	2.00
47686344--47686550	40	5.2	40	84	6	226	23	22	28	25	2.00
47686340--47686550	79	2.7	80	82	5	277	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344