genome.fa.s10.2.7.7.80.10.50.1000.330.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  330  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107366224--107366425	73	2.8	71	87	6	262	34	21	15	28	1.94
107366342--107366608	91	2.9	90	81	8	342	40	18	16	25	1.91
107366501--107366532	14	2.3	14	94	0	55	65	6	15	12	1.44
107366599--107366636	14	2.7	14	87	0	58	65	5	13	15	1.43
107366685--107366735	14	3.6	14	89	0	66	54	5	17	21	1.63
107366787--107366821	14	2.5	14	90	0	52	60	5	14	20	1.54
107375337--107375378	22	2.0	21	85	4	57	59	2	14	23	1.47
107375431--107375484	24	2.2	26	83	9	69	59	3	5	31	1.38
107375527--107375653	24	5.2	25	71	17	81	53	4	8	33	1.52
107375635--107375682	21	2.3	20	82	3	51	52	10	6	31	1.60
107375948--107375980	12	2.7	13	90	9	52	63	0	0	36	0.95
107376071--107376104	3	11.0	3	93	6	59	64	2	0	32	1.08
107376661--107376699	18	2.1	19	90	4	62	12	7	0	79	0.93
107380734--107380772	17	2.3	17	95	0	69	28	0	17	53	1.44
107382113--107382227	57	2.1	54	91	4	185	33	12	10	44	1.76
107383150--107383308	80	2.0	82	81	7	191	39	5	2	52	1.39
107387499--107387539	21	2.0	21	90	0	64	19	29	21	29	1.98
107392312--107392345	18	2.0	17	88	11	52	52	0	0	47	1.00
107392775--107392817	16	2.6	17	82	14	54	46	6	0	46	1.30
107393425--107393452	13	2.2	13	100	0	56	32	7	14	46	1.71
107393717--107393812	48	2.0	48	97	0	183	35	22	15	26	1.94
107398090--107398127	17	2.2	18	95	4	69	28	5	5	60	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107398675--107398717	16	2.6	17	82	14	54	46	6	0	46	1.30
107398940--107398985	18	2.6	17	79	3	56	13	8	0	78	0.97
107402726--107402786	30	2.0	30	83	0	77	32	22	6	37	1.80
107406480--107406553	26	2.8	26	93	0	130	33	25	5	35	1.79
107407196--107407292	46	2.1	47	96	1	178	31	7	10	50	1.64
107408109--107408146	16	2.4	17	82	13	53	47	7	0	44	1.32
107408272--107408337	33	2.0	33	100	0	132	27	15	21	36	1.93
107408632--107408696	32	2.0	32	100	0	130	30	6	24	38	1.80
107410218--107410270	26	2.0	26	85	7	72	35	22	15	26	1.93
107411875--107411905	12	2.6	12	94	0	53	12	25	48	12	1.77
107416722--107416786	32	2.0	32	96	0	121	32	6	23	38	1.79
107420118--107420173	26	2.2	26	96	0	103	30	5	26	37	1.79
107423032--107423080	24	2.0	25	96	4	91	36	8	2	53	1.43
107424192--107424234	16	2.6	17	82	14	54	46	6	0	46	1.30
107423982--107424408	227	1.9	231	83	4	569	45	6	10	37	1.64
107423982--107424459	227	2.1	231	82	7	544	45	6	9	38	1.63
107424498--107424546	16	3.1	16	85	2	64	8	10	0	81	0.87
107427787--107427824	18	2.0	20	85	15	53	26	10	5	57	1.53
107427858--107427891	11	3.1	11	91	0	50	35	2	0	61	1.11
107429796--107429929	66	2.0	66	95	0	241	55	15	10	18	1.68
107430489--107430532	21	2.1	21	83	8	54	59	6	4	29	1.44
107435713--107435751	18	2.1	19	85	4	53	25	12	7	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107435871--107435937	24	3.1	22	81	10	68	44	1	0	53	1.09
107435877--107435932	24	2.5	23	82	11	71	46	0	0	53	1.00
107435884--107435955	13	5.4	14	71	25	50	45	1	2	50	1.25
107436019--107436061	20	2.1	21	84	16	56	30	4	9	55	1.52
107436045--107436091	15	3.3	15	86	13	57	31	0	14	53	1.42
107436318--107436408	28	3.3	28	70	17	75	35	14	3	47	1.60
107438010--107438049	18	2.1	20	86	9	57	55	0	7	37	1.29
107440766--107440996	118	2.0	118	88	0	345	29	29	17	24	1.97
107441906--107441978	5	13.8	5	79	16	60	78	0	2	19	0.88
107441906--107441980	25	2.8	29	76	13	72	77	0	4	18	0.92
107447202--107447259	26	2.2	26	93	0	98	34	5	24	36	1.78
107452196--107452272	23	3.2	24	81	15	81	61	2	5	31	1.32
107452191--107452428	3	79.7	3	65	17	59	61	5	7	25	1.44
107453084--107453142	22	2.6	22	74	12	57	30	35	5	28	1.79
107454509--107454651	68	2.1	69	98	1	279	25	15	41	18	1.89
107459310--107459343	13	2.6	13	90	0	50	23	14	0	61	1.33
107465764--107465814	26	1.9	26	88	4	75	41	5	9	43	1.62
107469018--107469174	83	1.9	84	90	1	253	48	8	8	34	1.64
107469956--107470121	47	3.5	47	77	6	181	33	22	4	39	1.73
107469982--107470128	49	3.0	49	79	7	201	33	21	4	40	1.72
107469942--107470128	96	1.9	96	91	0	302	33	22	4	39	1.74
107470701--107470730	15	1.9	16	93	6	53	40	0	3	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107476930--107476975	22	2.1	22	100	0	92	21	17	17	43	1.88
107477096--107477181	30	2.8	30	72	8	84	33	6	18	40	1.78
107477568--107477615	22	2.2	22	92	0	78	31	50	4	14	1.62
107478710--107478740	16	1.9	16	93	0	53	32	0	0	67	0.91
107480270--107480315	22	2.1	22	91	0	74	50	4	10	34	1.57
107499205--107499234	3	9.7	3	92	7	51	66	0	33	0	0.92
107500610--107500844	119	2.0	119	96	0	434	40	17	16	26	1.90
107506590--107506652	29	2.1	31	82	11	78	31	7	11	49	1.67
107519670--107519737	32	2.1	32	88	0	100	35	8	8	47	1.66
107521398--107521441	23	1.9	23	95	0	79	40	20	13	25	1.89
107522401--107522442	22	1.9	22	95	0	75	35	9	11	42	1.74
107523472--107523552	40	2.0	40	97	0	153	34	12	16	37	1.86
107525261--107525413	51	3.0	51	88	0	225	34	26	9	30	1.87
107525541--107525610	33	2.1	33	86	0	95	24	38	2	34	1.70
107526651--107526686	16	2.2	16	90	0	54	30	2	27	38	1.71
107527439--107528049	318	1.9	321	89	3	953	26	22	17	34	1.95
107529375--107529699	124	2.5	128	87	4	442	36	11	20	32	1.87
107532692--107532732	2	20.5	2	100	0	82	0	48	0	51	1.00
107534378--107534445	29	2.3	31	79	5	77	41	17	8	32	1.80
107534806--107534864	29	2.0	29	100	0	118	42	13	16	27	1.86
107544243--107544303	19	3.2	18	75	9	50	65	4	0	29	1.13
107544263--107544319	26	2.0	26	87	12	78	68	7	1	22	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107550067--107550106	20	2.0	20	85	5	53	65	5	2	27	1.27
107550095--107550134	20	2.0	21	90	5	64	62	2	5	30	1.29
107551198--107551229	16	2.0	16	100	0	64	56	0	6	37	1.25
107551770--107551818	13	3.8	13	78	5	55	48	0	12	38	1.41
107556906--107556945	19	2.1	19	86	9	55	40	2	0	57	1.12
107557062--107557091	7	4.3	7	95	0	51	63	0	0	36	0.95
107557053--107557103	14	3.6	14	84	7	59	58	0	0	41	0.98
107559728--107559824	27	3.7	26	72	21	69	63	2	6	27	1.29
107559847--107559885	12	3.2	13	92	7	64	64	0	0	35	0.94
107559850--107559886	3	12.3	3	88	11	58	67	0	0	32	0.91
107561563--107561650	41	2.2	40	86	6	117	39	3	5	51	1.43
107563983--107564025	3	14.3	3	83	9	52	32	4	0	62	1.15
107563983--107564048	12	5.6	12	75	18	59	31	4	0	63	1.14
107563985--107564031	24	2.0	24	95	0	85	34	4	0	61	1.15
107565450--107565546	38	2.6	39	79	11	103	51	1	12	35	1.46
107565892--107566021	64	2.1	62	83	11	158	56	2	4	36	1.33
107566360--107566427	3	22.3	3	73	8	57	61	7	0	30	1.23
107566892--107566927	11	3.2	12	88	11	58	47	0	52	0	1.00
107567694--107567738	18	2.6	18	85	3	56	33	8	6	51	1.59
107567709--107567791	3	27.0	3	71	9	51	30	9	3	56	1.48
107567751--107567791	9	4.7	9	87	6	57	34	7	0	58	1.26
107573349--107573387	21	1.9	21	84	5	53	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107574005--107574081	38	2.0	38	100	0	154	24	28	12	33	1.93
107578055--107578089	18	1.9	18	88	11	54	62	0	0	37	0.95
107581222--107581272	3	17.3	3	81	4	59	25	0	39	35	1.56
107582326--107582369	21	2.0	22	83	16	56	50	2	4	43	1.35
107583052--107583084	14	2.3	15	89	5	50	84	0	15	0	0.61
107583692--107583751	29	2.1	29	100	0	120	35	31	3	30	1.74
107589418--107589460	15	2.9	14	80	13	50	20	4	2	72	1.14
107592316--107592346	11	2.8	11	95	0	53	19	48	3	29	1.64
107592891--107592983	18	5.2	18	90	0	150	27	22	17	32	1.96
107597037--107597067	11	2.8	11	95	0	53	19	48	3	29	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344