genome.fa.s10.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  167  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55798640--55798677	10	3.8	10	83	13	51	26	15	28	28	1.96
55798642--55798687	20	2.4	19	92	3	74	23	17	32	26	1.97
55800678--55800715	20	1.9	20	94	0	67	28	28	5	36	1.79
55803097--55803151	26	2.1	26	86	6	76	30	5	16	47	1.69
55805087--55805130	22	2.0	22	95	0	79	34	4	36	25	1.76
55809314--55809368	17	3.2	17	76	5	56	7	12	3	76	1.12
55809319--55809360	18	2.3	18	87	4	57	7	9	2	80	0.97
55811889--55811932	22	2.0	22	95	0	79	34	4	36	25	1.76
55815321--55815358	20	1.9	20	84	10	51	57	7	0	34	1.28
55815500--55815560	31	2.0	30	87	3	86	39	13	22	24	1.90
55815501--55815573	30	2.4	31	83	2	94	38	12	24	24	1.90
55815823--55815879	29	2.0	29	92	0	96	24	0	29	45	1.53
55823814--55823866	23	2.4	22	76	20	56	9	18	1	69	1.25
55825119--55825143	13	1.9	13	100	0	50	36	16	32	16	1.90
55826032--55826069	10	3.8	10	83	13	51	28	31	18	21	1.97
55826031--55826068	20	1.9	20	94	0	67	28	34	18	18	1.95
55829077--55829125	21	2.2	22	85	7	64	6	20	2	71	1.18
55830153--55830205	27	2.0	27	85	7	72	15	11	7	66	1.44
55831049--55831073	13	1.9	13	100	0	50	36	16	32	16	1.90
55834383--55834411	15	1.9	15	100	0	58	13	6	6	72	1.26
55834419--55834473	15	3.8	15	76	16	53	14	9	7	69	1.36
55834420--55834473	28	1.9	28	84	0	72	14	9	7	68	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55835316--55835340	13	1.9	13	100	0	50	36	16	32	16	1.90
55837936--55837969	4	8.0	4	93	6	50	76	0	0	23	0.79
55838239--55838329	19	4.9	19	69	22	68	46	12	8	32	1.72
55838229--55838357	54	2.4	54	85	5	172	43	13	8	34	1.74
55840020--55840196	27	6.6	27	83	4	178	29	27	15	27	1.96
55840020--55840196	54	3.3	54	82	4	205	29	27	15	27	1.96
55840041--55840195	82	1.9	80	86	5	222	29	27	15	27	1.96
55853482--55853654	46	3.7	46	70	9	136	30	28	18	23	1.98
55853489--55853661	93	1.9	93	87	2	258	28	28	19	23	1.98
55856043--55856122	15	5.4	15	75	7	74	56	13	18	11	1.67
55856054--55856131	15	5.2	15	72	9	61	53	15	17	12	1.72
55866451--55866543	42	2.2	42	90	0	141	26	32	18	22	1.97
55869466--55869492	13	2.1	13	100	0	54	37	22	7	33	1.82
55869497--55869547	21	2.4	21	93	0	84	47	21	3	27	1.68
55878472--55878505	6	5.7	6	100	0	68	32	0	17	50	1.47
55878681--55878776	40	2.5	38	76	6	102	16	9	34	39	1.81
55881150--55881219	27	2.6	27	95	2	113	31	28	12	27	1.93
55881150--55881247	28	3.5	28	90	2	135	31	28	13	26	1.94
55885880--55885916	18	2.1	19	85	10	51	10	29	43	16	1.82
55886916--55887009	40	2.4	38	82	6	125	39	35	10	14	1.81
55889866--55889922	25	2.3	25	81	6	71	42	14	1	42	1.55
55893553--55893604	22	2.4	22	80	6	61	19	21	13	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55895884--55895981	43	2.4	41	80	10	110	35	5	0	59	1.20
55895906--55895957	16	3.4	16	77	12	56	34	5	0	59	1.21
55899928--55899977	13	3.5	15	79	17	54	26	22	8	44	1.80
55904512--55904682	93	1.8	93	93	2	299	28	28	21	22	1.99
55904504--55904679	46	3.8	46	77	14	200	29	27	20	22	1.98
55904905--55904975	34	2.1	34	100	0	142	46	11	2	39	1.54
55905136--55905194	30	2.0	30	89	0	91	28	25	8	37	1.85
55912180--55912265	46	1.9	45	85	4	120	31	29	18	20	1.97
55918300--55918893	210	2.8	210	84	4	724	30	18	22	28	1.97
55923080--55923134	19	2.8	20	81	13	60	25	1	5	67	1.22
55930604--55930693	37	2.4	37	90	0	135	35	31	11	22	1.89
55934125--55934182	29	2.0	30	86	3	82	39	0	0	60	0.97
55934214--55934370	31	5.2	28	74	20	108	32	1	1	64	1.09
55934214--55934368	12	14.8	11	72	18	93	32	1	1	65	1.09
55934218--55934294	21	3.8	20	77	15	86	29	0	1	68	0.97
55934215--55934369	37	4.4	35	78	13	142	31	1	1	65	1.08
55934242--55934370	31	4.7	28	74	20	112	32	1	0	65	1.08
55934221--55934358	73	1.9	72	84	10	183	31	1	1	65	1.11
55934214--55934386	27	6.3	27	72	27	111	32	1	1	64	1.14
55934863--55934912	7	7.0	7	84	11	66	26	2	2	70	1.09
55935779--55935815	9	4.1	9	89	0	56	32	10	10	45	1.74
55940822--55940861	21	1.9	21	94	0	71	52	17	5	25	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55944306--55944419	45	2.6	45	76	4	124	22	26	20	30	1.98
55944167--55944564	143	2.8	141	80	6	423	26	21	20	31	1.98
55956098--55956210	38	3.1	37	87	8	160	25	20	29	24	1.99
55956104--55956234	36	3.6	37	85	9	148	25	20	30	23	1.99
55964018--55964242	40	5.7	40	86	5	296	24	22	28	25	2.00
55964018--55964275	119	2.2	119	81	6	283	25	21	27	24	1.99
55965826--55965929	53	2.0	53	92	0	172	51	8	15	24	1.71
55965850--55965932	27	3.1	26	66	22	64	50	7	18	24	1.71
55967809--55967857	25	2.0	25	100	0	98	28	16	18	36	1.92
55969792--55969840	24	2.0	24	84	0	62	12	18	18	51	1.76
55979535--55979671	37	4.0	37	78	18	177	25	31	18	24	1.98
55979535--55979662	64	2.0	64	95	0	229	25	31	18	24	1.98
55979574--55979625	27	1.9	27	100	0	104	25	30	19	25	1.98
55979812--55980053	48	5.0	48	91	0	376	31	26	6	35	1.81
55987734--55987787	27	2.0	27	100	0	108	22	18	7	51	1.70
55990058--55990329	47	5.8	46	74	12	198	29	20	28	22	1.98
55990058--55990330	94	2.9	91	76	11	295	29	20	28	21	1.98
55992409--55992736	75	4.4	75	81	4	342	31	22	20	25	1.98
55992495--55992619	40	3.2	40	68	19	111	30	20	20	28	1.98
55992610--55992730	35	3.3	35	75	10	116	31	23	20	24	1.98
55992408--55992740	150	2.2	149	80	5	395	31	22	20	25	1.98
55997571--55997613	18	2.4	18	81	14	61	46	4	9	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55998052--55998146	28	3.4	28	88	2	120	28	12	27	31	1.93
55998080--55998162	27	3.0	27	85	5	78	32	12	24	31	1.91
56004119--56004144	13	2.0	13	100	0	52	38	30	7	23	1.83
56004655--56004679	13	1.9	13	100	0	50	16	0	0	84	0.63
56009097--56009501	47	8.6	47	93	1	666	33	7	29	29	1.86
56010571--56010647	40	1.9	40	86	0	109	38	31	12	16	1.87
56012391--56012427	19	1.9	19	88	0	56	59	2	18	18	1.50
56012543--56012568	13	2.0	13	100	0	52	46	0	0	53	1.00
56015302--56015335	16	2.1	16	88	0	50	41	2	20	35	1.68
56023093--56023132	21	1.9	21	89	0	62	40	0	17	42	1.49
56023764--56023887	22	5.4	23	79	8	112	23	21	19	35	1.96
56042885--56042979	48	2.0	48	85	0	127	29	17	21	31	1.96
56050620--56050653	16	2.1	16	88	0	50	82	0	14	2	0.79
56050690--56050755	26	2.6	26	83	11	75	33	1	0	65	1.02
56050710--56050755	17	2.8	17	87	9	60	36	0	0	63	0.95
56050711--56050766	19	3.1	18	75	12	53	39	0	1	58	1.08
56052382--56052467	42	2.0	43	97	2	165	41	4	12	40	1.64
56059678--56060014	178	1.9	174	85	4	462	44	10	14	31	1.78
56061413--56061455	17	2.7	16	85	7	61	60	4	0	34	1.17
56061413--56061450	16	2.3	17	90	4	60	63	5	0	31	1.17
56065821--56066066	124	2.0	124	99	0	483	42	25	4	26	1.75
56067055--56067125	35	2.0	35	94	0	124	46	14	0	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56071761--56071900	43	3.3	43	77	6	124	27	20	25	26	1.99
56078697--56078731	18	1.9	18	88	0	52	34	0	11	54	1.37
56079099--56079127	11	2.5	12	94	5	51	17	24	0	58	1.38
56082995--56083132	69	2.0	69	95	0	249	36	9	21	32	1.86
56085646--56085679	11	2.8	12	86	13	52	17	26	0	55	1.42
56087453--56087537	43	2.0	44	83	6	111	23	17	28	30	1.97
56090463--56090495	13	2.6	13	90	4	50	30	3	15	51	1.58
56092006--56092154	42	3.5	41	84	8	185	31	24	13	30	1.93
56096482--56096571	42	2.1	42	85	4	119	32	23	13	31	1.93
56106216--56106417	46	4.4	47	76	7	166	30	20	28	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344