Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  13  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4744197--4744234
13
2.9
14
88
11
62
63
5
0
31
1.17
4748274--4748332
31
1.9
31
82
6
75
40
10
8
40
1.69
4749925--4750029
52
2.0
52
92
0
174
33
18
12
36
1.88
4758209--4758270
22
2.8
22
82
4
72
46
1
3
48
1.28
4761311--4761365
25
2.3
23
78
12
58
43
3
18
34
1.67
4761664--4761699
16
2.3
16
90
4
56
50
5
2
41
1.40
4761771--4761805
9
3.9
9
84
0
52
57
2
0
40
1.14
4761873--4761909
19
1.9
19
94
0
65
51
2
13
32
1.55
4761993--4762067
30
2.5
30
81
10
82
56
6
2
34
1.40
4762105--4762150
23
2.0
23
86
4
65
63
6
0
30
1.20
4764055--4764167
19
5.8
19
72
10
68
40
1
2
54
1.24
4764330--4764364
9
3.9
9
84
0
52
40
20
14
25
1.90
4765558--4765603
24
2.0
24
86
4
67
56
10
4
28
1.53
4768146--4768178
12
2.8
12
90
0
57
24
18
0
57
1.40
4769786--4769834
25
2.0
24
92
4
80
12
22
22
42
1.86
4774104--4774227
64
1.9
66
86
5
171
29
18
29
22
1.97
4774104--4774287
67
2.8
63
80
10
203
29
17
30
22
1.96
4782116--4782146
16
1.9
16
93
0
53
54
3
6
35
1.42
4787505--4787564
28
2.1
29
85
11
81
35
5
5
55
1.44
4787503--4787564
29
2.1
29
82
11
74
35
4
4
54
1.43
4788562--4788886
131
2.5
129
82
3
404
27
17
18
36
1.94
4793262--4793293
14
2.3
14
94
0
55
43
0
3
53
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4794028--4794095
27
2.5
28
79
9
70
48
1
0
50
1.10
4803221--4803309
28
3.2
26
73
20
74
25
4
2
67
1.21
4803275--4803325
24
2.0
25
85
14
70
29
1
3
64
1.22
4805738--4805776
19
2.0
20
90
5
62
20
0
7
71
1.10
4805757--4805802
25
1.9
23
86
8
65
28
0
8
63
1.24
4812691--4812720
14
2.1
15
93
6
53
36
6
3
53
1.44
4812990--4813151
80
2.0
80
98
0
315
29
24
7
39
1.82
4816151--4816199
25
2.0
25
91
0
80
38
18
4
38
1.70
4816151--4816201
12
4.1
13
76
16
54
37
17
3
41
1.68
4819542--4819602
9
6.8
9
96
0
95
22
9
27
39
1.86
4819762--4819786
12
2.1
12
100
0
50
16
24
36
24
1.94
4821438--4821486
25
2.0
25
91
0
80
38
18
4
38
1.70
4823195--4823237
13
3.0
15
83
13
63
20
27
2
48
1.62
4826428--4826460
9
3.7
9
95
0
57
33
60
0
6
1.21
4826428--4826461
3
11.3
3
87
0
50
32
61
0
5
1.20
4831751--4831843
18
5.2
18
88
0
141
33
15
22
29
1.94
4833924--4833958
18
1.9
18
88
0
52
40
0
0
60
0.97
4839421--4839481
29
2.1
29
85
8
81
42
3
0
54
1.17
4849547--4849587
17
2.5
17
80
11
50
29
0
12
58
1.34
4850089--4850127
8
4.7
9
90
9
57
58
0
0
41
0.98
4850088--4850132
17
2.7
16
83
16
56
60
0
2
37
1.09
4850088--4850132
8
5.4
8
85
15
56
60
0
2
37
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4854331--4854568
120
2.0
122
90
1
381
55
5
8
30
1.53
4861114--4861149
14
2.6
14
86
0
54
77
2
2
16
1.00
4861424--4861499
10
7.6
10
72
20
52
32
2
0
64
1.07
4865189--4865257
35
2.0
35
97
0
129
34
15
10
39
1.82
4872193--4872225
13
2.6
13
85
4
50
30
0
6
63
1.18
4874084--4874311
46
5.0
46
89
1
314
40
14
24
20
1.90
4874592--4874624
17
2.0
17
88
5
50
48
3
15
33
1.60
4876107--4876278
93
1.8
93
92
0
290
27
29
20
21
1.98
4876099--4876274
46
3.8
46
79
12
198
28
28
20
21
1.98
4879243--4879270
3
9.3
3
100
0
56
67
0
0
32
0.91
4881140--4881183
20
2.0
23
87
12
67
47
0
2
50
1.13
4882439--4882483
12
3.7
12
93
3
72
35
0
0
64
0.94
4883663--4883701
21
1.9
21
84
5
53
64
7
0
28
1.21
4887395--4887464
33
2.2
33
92
2
115
47
8
12
31
1.72
4888592--4888660
28
2.5
27
72
23
70
33
2
10
53
1.49
4898886--4898914
14
2.0
15
93
6
51
20
6
17
55
1.65
4899029--4899157
50
2.5
51
86
5
181
34
15
23
26
1.94
4899133--4899312
31
5.8
31
90
2
272
26
18
27
26
1.98
4899431--4899543
42
2.7
42
88
2
156
30
14
26
29
1.95
4902472--4902536
21
3.2
21
74
12
73
41
21
26
10
1.86
4902466--4902554
39
2.3
39
98
0
169
39
23
24
12
1.89
4903756--4903877
61
2.0
61
100
0
244
37
19
8
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4906552--4906633
21
3.8
21
90
3
119
34
28
24
13
1.93
4906539--4906645
21
5.0
22
80
10
96
36
26
22
14
1.93
4907017--4907074
15
3.8
15
86
2
80
53
10
0
36
1.35
4908354--4908410
5
11.4
5
100
0
114
59
0
0
40
0.97
4908433--4908461
8
3.6
8
100
0
58
62
0
0
37
0.96
4908353--4908462
10
12.3
9
81
11
81
57
1
0
40
1.09
4913789--4913853
21
3.2
21
74
12
73
41
21
26
10
1.86
4913783--4913871
39
2.3
39
96
0
160
39
23
23
13
1.90
4913801--4913864
19
3.3
19
70
12
67
37
23
25
14
1.92
4921022--4921066
19
2.5
19
85
7
58
66
0
2
31
1.04
4921751--4921790
18
2.2
18
86
4
53
62
2
2
32
1.22
4922796--4922824
8
3.6
8
100
0
58
37
0
0
62
0.96
4922884--4922916
16
2.1
16
94
0
57
63
9
21
6
1.45
4924378--4924427
15
3.3
15
88
0
73
58
14
18
10
1.63
4924369--4924436
15
4.5
15
80
7
59
54
17
17
10
1.70
4931865--4932037
39
4.5
39
96
1
312
28
31
23
17
1.97
4931865--4932038
77
2.2
78
94
1
314
28
31
22
17
1.97
4934019--4934059
19
2.2
19
90
0
64
39
9
0
51
1.35
4934754--4934782
14
2.0
15
93
6
51
68
0
3
27
1.05
4936261--4936371
45
2.5
45
75
5
109
25
25
19
29
1.99
4936299--4936654
135
2.7
132
91
2
545
26
23
20
29
1.99
4937176--4937302
3
43.0
3
70
16
70
29
3
1
64
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4938458--4939077
133
4.7
133
92
0
1003
25
24
21
28
1.99
4938731--4938924
43
4.4
43
65
18
112
24
28
20
26
1.99
4946784--4946828
21
2.1
21
91
0
72
17
24
20
37
1.93
4951133--4951176
14
3.2
14
87
3
63
72
0
2
25
0.96
4951418--4951532
12
10.3
11
66
21
53
67
0
6
25
1.15
4954424--4954456
8
4.1
8
96
0
57
33
0
3
63
1.10
4954438--4954475
13
3.0
13
84
3
51
42
0
0
57
0.98
4954740--4954768
13
2.1
14
93
6
51
48
0
0
51
1.00
4966191--4966229
13
3.0
13
82
10
53
43
0
0
56
0.99
4966191--4966230
14
2.9
14
85
3
55
45
0
0
55
0.99
4966237--4966305
19
3.6
19
76
20
72
50
0
1
47
1.09
4966237--4966310
22
3.5
21
77
12
64
51
0
1
47
1.09
4985689--4986360
43
15.5
45
77
7
552
28
16
26
29
1.97
4985689--4986357
87
7.7
88
76
9
563
28
16
26
29
1.97
4985690--4986360
131
5.2
131
88
4
882
28
16
26
29
1.97
5002820--5002878
31
1.9
31
82
6
75
49
1
6
42
1.39
5004771--5004833
27
2.4
25
77
15
65
34
1
0
63
1.04
5021728--5021763
12
3.0
12
91
0
54
44
5
22
27
1.75
5023337--5023384
16
3.1
15
90
6
69
64
2
2
31
1.16
5023333--5023384
8
6.5
8
82
8
61
65
1
1
30
1.14
5023332--5023388
24
2.4
24
79
5
71
64
1
3
29
1.20
5023497--5023550
23
2.5
22
75
13
60
57
5
5
31
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5023513--5023598
25
3.7
24
79
10
81
55
5
6
31
1.50
5023619--5023752
25
5.6
25
71
11
93
58
2
3
35
1.28
5024232--5024320
30
3.0
30
91
0
151
21
3
50
24
1.64
5031981--5032039
31
1.9
31
82
6
75
49
1
6
42
1.39
5033941--5034003
27
2.4
25
77
15
65
34
1
0
63
1.04
5049720--5049779
31
1.9
31
89
0
93
40
5
6
48
1.51
5054551--5054646
48
2.0
48
100
0
192
39
12
14
33
1.84
5057687--5057713
6
4.5
6
100
0
54
18
0
0
81
0.69
5064748--5065094
47
7.4
47
94
0
577
31
8
30
29
1.86
5077421--5077540
35
3.4
35
78
11
129
42
17
8
31
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344