genome.fa.s10.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  149  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49604783--49604954	45	4.0	44	76	11	160	31	27	16	23	1.96
49620169--49620340	93	1.8	93	93	0	299	28	29	20	21	1.98
49620161--49620336	46	3.8	46	78	10	196	30	28	19	21	1.97
49620168--49620355	46	4.1	44	69	21	109	29	28	19	22	1.98
49627819--49627879	31	2.0	31	84	9	81	21	22	19	36	1.95
49627837--49627905	30	2.3	31	85	7	88	21	18	20	39	1.93
49627981--49628025	18	2.5	17	80	13	54	35	4	15	44	1.67
49628811--49628846	11	3.3	11	92	0	54	38	19	25	16	1.92
49628809--49628860	22	2.4	22	80	0	59	34	17	26	21	1.95
49631790--49631967	27	6.6	27	84	3	205	29	28	15	26	1.96
49631811--49631966	82	1.9	81	88	3	233	29	28	15	26	1.96
49631790--49631981	82	2.3	83	77	11	216	30	27	14	28	1.95
49634015--49634062	17	2.6	19	77	12	55	31	2	16	50	1.57
49636161--49636194	16	2.1	16	94	0	59	35	20	14	29	1.93
49636975--49637012	16	2.4	16	86	4	51	26	2	5	65	1.27
49641877--49642031	28	5.6	28	97	0	285	32	28	12	26	1.92
49649142--49649226	22	3.9	22	76	0	89	14	29	24	31	1.94
49656482--49656656	27	6.4	27	84	3	181	30	28	14	26	1.95
49656503--49656656	82	1.9	81	87	4	229	29	27	14	27	1.96
49656482--49656656	54	3.2	54	81	6	201	30	28	14	26	1.95
49657208--49657232	13	1.9	13	100	0	50	32	16	20	32	1.94
49657987--49658029	20	2.1	20	86	4	59	16	20	0	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49664501--49664674	27	6.6	27	82	7	169	29	28	14	27	1.95
49664522--49664673	81	1.9	77	85	7	207	29	28	14	26	1.95
49665209--49665233	13	1.9	13	100	0	50	32	16	20	32	1.94
49665960--49666001	20	2.1	20	86	0	57	16	21	0	61	1.34
49676624--49676819	49	4.0	49	85	1	230	27	19	25	27	1.99
49679173--49679232	26	2.3	26	85	0	75	35	26	11	26	1.91
49679336--49679450	27	4.3	26	84	5	131	20	23	20	34	1.96
49681076--49681126	11	4.9	11	83	9	63	31	11	27	29	1.92
49683040--49683073	15	2.1	16	89	10	52	14	29	0	55	1.40
49699894--49700030	56	2.4	56	95	0	238	34	24	14	27	1.94
49715973--49716079	27	3.9	27	82	9	119	38	23	21	16	1.93
49715970--49716079	54	2.0	54	84	3	141	39	22	21	16	1.92
49716495--49716528	16	2.2	15	94	5	59	2	17	26	52	1.58
49721998--49722071	24	3.1	25	82	5	91	41	21	20	16	1.90
49736471--49736536	20	3.3	20	86	0	78	10	24	21	43	1.83
49736489--49736551	20	3.2	20	83	0	63	6	23	25	44	1.77
49744856--49744898	21	2.0	23	86	9	63	48	27	4	18	1.68
49757457--49757506	18	2.8	18	87	6	66	50	8	0	42	1.32
49757994--49758080	46	1.9	46	86	9	126	42	10	2	44	1.51
49758366--49758391	13	2.0	13	100	0	52	38	0	15	46	1.46
49759475--49759602	42	3.0	42	78	8	143	32	11	21	33	1.90
49763486--49763517	15	2.1	15	100	0	64	25	6	0	68	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49765342--49765463	38	3.2	38	95	0	208	31	15	25	27	1.96
49774924--49774961	19	2.0	20	85	15	53	36	0	23	39	1.55
49782474--49782511	19	2.0	20	85	15	53	36	0	23	39	1.55
49788894--49788958	33	1.9	34	84	6	87	43	1	13	41	1.54
49791315--49791431	62	1.9	59	83	8	146	40	4	3	52	1.38
49794395--49794572	27	6.6	27	79	3	178	27	14	27	30	1.95
49794392--49794572	82	2.2	81	80	2	202	27	14	27	30	1.95
49802542--49802719	27	6.6	27	83	3	205	26	15	28	29	1.96
49802543--49802698	82	1.9	81	88	3	233	26	15	28	29	1.96
49802539--49802719	82	2.2	81	83	2	229	27	15	27	29	1.96
49807221--49807375	43	3.6	43	92	3	267	30	32	25	11	1.91
49807368--49807663	38	7.8	38	84	3	375	30	23	22	22	1.99
49807368--49807650	75	3.8	76	86	2	401	31	24	21	22	1.98
49807373--49807663	113	2.6	113	87	2	406	30	23	22	23	1.99
49810401--49810433	17	1.9	17	93	0	57	75	3	9	12	1.14
49818199--49818242	22	2.0	22	95	0	79	50	13	11	25	1.75
49819319--49819444	27	4.9	27	73	13	106	40	15	16	27	1.88
49819376--49819417	20	2.1	20	90	0	66	40	4	19	35	1.72
49819350--49819444	47	2.0	47	87	4	138	40	13	16	29	1.87
49820867--49820891	12	2.1	12	100	0	50	24	52	0	24	1.48
49832125--49832308	46	4.0	44	78	10	190	22	19	28	29	1.98
49832133--49832303	93	1.8	93	92	0	288	22	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49834781--49834846	28	2.4	28	92	2	107	25	21	18	34	1.96
49840237--49840344	56	1.9	56	87	7	157	33	24	15	26	1.95
49842478--49842538	27	2.3	27	85	5	79	27	16	22	32	1.96
49846706--49846865	46	3.5	46	71	17	141	30	28	18	21	1.97
49862281--49862326	23	2.1	21	84	8	56	50	21	4	23	1.67
49863042--49863177	43	3.2	42	74	9	105	31	23	19	25	1.98
49873474--49873519	23	2.1	21	84	8	56	50	21	4	23	1.67
49875188--49875227	19	2.1	19	95	0	71	30	5	17	47	1.69
49875276--49875364	40	2.2	41	84	9	112	30	15	24	29	1.96
49875295--49875393	40	2.4	40	85	10	119	26	14	30	29	1.95
49882760--49882837	39	2.0	39	100	0	156	41	17	17	23	1.91
49899721--49899805	40	2.2	39	81	8	100	27	25	21	25	1.99
49899744--49899824	40	2.1	39	92	2	135	27	27	20	24	1.99
49906860--49907044	40	4.7	39	86	4	237	24	27	23	24	2.00
49906853--49907047	79	2.5	80	85	2	259	24	27	23	25	2.00
49915084--49915191	27	4.0	27	82	5	121	37	22	24	15	1.93
49916600--49916700	24	4.2	24	84	2	123	23	38	3	33	1.74
49922968--49923049	27	3.1	27	87	7	114	39	20	23	17	1.92
49924973--49925569	47	12.6	47	90	2	899	32	8	29	29	1.87
49924973--49925569	96	6.3	96	91	3	924	32	8	29	29	1.87
49927798--49927925	40	3.2	39	93	3	220	22	24	29	23	1.99
49931146--49931485	47	7.4	47	86	6	446	32	10	30	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49931277--49931353	25	3.2	25	62	23	65	31	7	32	28	1.85
49931298--49931420	24	5.2	24	62	30	68	31	11	31	25	1.91
49931616--49931695	37	2.2	37	84	4	99	22	17	32	27	1.96
49933491--49933993	40	12.6	39	92	3	697	24	21	28	25	1.99
49938305--49938649	47	7.4	47	92	1	525	32	10	30	26	1.89
49938780--49938859	37	2.2	37	84	4	99	22	17	32	27	1.96
49940196--49940427	40	5.8	40	85	2	286	25	21	26	25	2.00
49940196--49940427	120	1.9	120	85	1	322	25	21	26	25	2.00
49943750--49944249	47	10.6	47	90	2	734	32	8	29	29	1.86
49943750--49944249	191	2.6	189	89	2	763	32	8	29	29	1.86
49945607--49945638	8	4.0	8	91	0	55	3	25	25	46	1.67
49946601--49946701	24	4.2	24	90	0	148	23	38	1	35	1.67
49947235--49947353	27	4.4	27	87	3	150	40	21	15	23	1.90
49956860--49957036	27	6.6	27	87	5	216	33	15	16	35	1.90
49956860--49957036	53	3.3	54	86	5	243	33	15	16	35	1.90
49957039--49957106	27	2.5	27	80	2	64	33	25	20	20	1.97
49957066--49957132	27	2.5	27	83	7	82	34	23	20	20	1.97
49957436--49957479	22	2.0	23	90	4	72	25	2	50	22	1.61
49959903--49959928	8	3.2	8	100	0	52	26	38	0	34	1.57
49962290--49962317	12	2.3	12	100	0	56	46	0	14	39	1.44
49967217--49967295	37	2.1	37	88	4	115	25	30	18	25	1.98
49967414--49967808	47	8.4	47	94	0	655	29	30	8	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49973889--49974091	55	3.8	54	80	1	237	37	19	24	18	1.94
49984178--49984248	34	2.1	34	100	0	142	32	28	7	32	1.84
49984594--49984756	48	3.4	48	76	3	168	23	28	19	27	1.98
49999933--50000024	27	3.4	27	88	5	132	29	25	6	39	1.81
50000086--50000255	27	6.3	26	72	13	110	38	17	10	32	1.84
50000087--50000246	53	2.9	54	80	5	153	40	18	8	31	1.81
50000145--50000252	27	3.9	27	79	11	112	41	18	8	31	1.80
50001169--50001238	25	2.8	24	91	4	104	24	27	24	24	2.00
50001167--50001251	25	3.5	24	82	7	100	27	23	23	25	2.00
50001459--50001630	31	5.5	31	92	0	299	30	17	23	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344