Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  320  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104881587--104881781
83
2.3
83
86
1
275
28
18
18
33
1.95
104881614--104882285
202
3.3
202
95
0
1191
28
19
18
32
1.96
104882019--104882176
83
1.9
83
86
0
226
27
20
19
32
1.97
104883109--104883167
22
2.8
20
80
19
66
1
13
0
84
0.69
104883116--104883157
12
3.4
12
80
6
57
2
11
0
85
0.68
104888418--104888457
20
2.0
21
85
14
57
57
10
10
22
1.61
104889200--104889242
17
2.4
18
84
7
52
62
0
2
34
1.08
104889178--104889242
20
3.5
19
78
14
64
63
0
4
32
1.15
104889299--104889336
19
2.0
19
89
0
58
60
2
7
28
1.38
104893939--104893989
24
2.1
23
82
13
59
15
3
7
72
1.23
104905825--104905900
21
3.6
21
70
7
64
19
25
14
40
1.89
104906922--104907004
26
3.2
25
93
5
139
33
4
25
36
1.77
104908790--104909065
137
2.0
137
97
0
516
25
19
24
31
1.98
104914326--104914415
18
4.9
18
90
5
137
37
11
14
36
1.82
104914326--104914415
35
2.5
36
92
7
155
37
11
14
36
1.82
104914898--104914952
17
3.4
16
75
18
53
36
1
0
61
1.06
104914929--104914977
26
1.9
25
83
4
62
36
4
0
59
1.17
104919959--104920070
56
2.0
56
100
0
224
28
19
21
30
1.98
104921777--104921951
44
4.0
44
74
11
142
30
17
25
26
1.97
104921946--104922165
121
1.8
121
89
0
350
33
18
20
28
1.96
104922313--104922865
83
6.7
83
94
0
923
32
18
21
26
1.97
104923635--104923776
35
4.0
35
95
2
248
38
10
14
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104924263--104924321
16
3.5
16
74
23
50
35
1
0
62
1.05
104924256--104924330
30
2.6
29
76
17
75
36
1
0
62
1.04
104924298--104924347
26
1.9
26
83
0
64
36
4
0
60
1.16
104932608--104932692
42
2.0
42
97
0
161
32
2
12
51
1.53
104933169--104933212
3
14.7
3
95
0
79
63
0
2
34
1.07
104933359--104933463
33
3.2
33
88
0
147
32
11
8
47
1.70
104933603--104933683
42
1.9
42
87
5
119
45
18
9
25
1.80
104935190--104935229
18
2.2
18
86
0
53
55
0
30
15
1.41
104946445--104946531
41
2.2
39
81
4
102
41
13
11
33
1.81
104949271--104949321
24
2.1
24
89
7
77
56
3
0
39
1.18
104951035--104951078
12
3.4
12
82
14
52
31
2
0
65
1.05
104951021--104951083
27
2.3
27
83
5
74
28
1
1
68
1.08
104951115--104951209
15
6.3
15
75
20
65
34
4
1
60
1.23
104951118--104951210
23
4.0
23
73
22
79
34
4
1
60
1.24
104951551--104951592
19
2.2
19
86
4
57
38
7
2
52
1.42
104953082--104953153
3
24.0
3
85
0
63
56
1
8
33
1.38
104957938--104957987
20
2.5
20
90
0
82
20
14
28
38
1.91
104958953--104958982
10
3.0
10
90
0
51
26
0
13
60
1.34
104960711--104960766
17
3.5
15
86
13
76
10
1
1
85
0.74
104960711--104960797
15
5.6
16
75
16
58
13
3
2
80
0.94
104960718--104960781
17
3.6
17
82
14
58
10
3
3
82
0.89
104960721--104960777
30
1.9
30
85
0
78
12
3
3
80
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104960762--104960797
17
2.2
18
85
14
51
19
5
2
72
1.17
104960871--104960988
23
5.0
22
73
19
69
23
1
4
70
1.14
104960709--104960963
16
16.3
15
63
23
57
17
3
4
74
1.14
104960711--104960965
19
13.6
18
67
20
66
17
3
4
74
1.14
104960920--104960988
30
2.4
31
80
9
74
24
1
2
71
1.09
104960926--104960987
26
2.3
26
78
13
63
22
1
3
72
1.08
104960970--104961055
23
3.9
21
77
14
84
32
4
5
56
1.43
104961123--104961177
29
1.9
28
82
10
67
27
7
1
63
1.31
104961248--104961287
20
2.0
21
95
5
73
37
7
5
50
1.53
104976719--104977678
75
11.9
77
71
17
483
28
17
19
35
1.94
104976863--104976892
14
2.1
14
100
0
60
13
13
6
66
1.43
104976801--104976969
89
1.9
89
91
2
277
27
16
19
36
1.93
104976730--104977678
163
5.8
163
82
7
1002
28
17
19
34
1.94
104977053--104977358
152
2.0
151
87
1
434
27
18
19
34
1.95
104977341--104977374
15
2.3
15
89
0
50
14
11
5
67
1.39
104977377--104977523
73
2.0
74
86
5
208
29
16
20
34
1.94
104977429--104977598
88
1.9
88
92
0
286
26
15
18
38
1.91
104977788--104977882
44
2.1
45
92
1
156
24
22
26
27
2.00
104977820--104977975
44
3.5
44
80
6
147
27
18
26
27
1.98
104979564--104979606
15
3.1
14
83
9
52
27
4
4
62
1.35
104979586--104979628
11
3.9
11
81
6
52
32
0
0
67
0.91
104979789--104980010
23
9.2
25
78
12
200
32
4
4
57
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104979789--104980024
48
4.8
45
74
16
172
33
4
5
56
1.43
104980124--104980188
25
2.6
25
79
11
80
32
7
7
52
1.58
104988733--104988780
14
3.3
14
85
11
53
64
2
2
31
1.16
104988730--104988784
23
2.4
22
81
9
65
65
1
1
30
1.13
104988730--104988780
8
6.5
8
78
13
52
64
1
1
31
1.15
104988734--104988780
16
3.1
15
84
12
60
63
2
2
31
1.18
104988913--104988996
22
3.7
22
74
12
71
54
5
7
32
1.52
104989023--104989154
25
5.6
25
73
12
91
57
3
4
34
1.37
104989016--104989079
25
2.4
27
71
10
69
60
1
3
34
1.22
104989642--104989786
30
4.8
30
88
1
186
20
4
48
27
1.67
104992539--104992580
18
2.3
18
80
8
50
26
0
9
64
1.24
104994866--104994989
60
2.1
60
81
3
142
38
5
14
41
1.70
104995830--104995881
27
1.9
27
100
0
104
50
11
1
36
1.50
105001351--105001438
46
1.9
45
82
11
108
36
14
20
28
1.92
105006321--105006354
16
2.1
16
88
0
50
50
14
17
17
1.79
105009153--105009193
21
2.0
21
90
0
64
29
21
29
19
1.98
105011098--105011131
16
2.1
16
88
0
50
50
14
17
17
1.79
105013701--105013733
17
1.9
17
93
0
57
39
15
0
45
1.46
105015228--105015274
21
2.2
22
88
3
69
21
36
19
23
1.95
105022668--105022765
32
3.0
32
90
1
151
39
12
12
35
1.80
105025728--105025764
16
2.4
16
95
4
67
37
0
10
51
1.37
105026050--105026094
22
2.0
22
100
0
90
40
15
4
40
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105026420--105026447
10
2.8
10
100
0
56
25
10
10
53
1.67
105026844--105026926
43
1.9
43
97
0
157
37
2
21
38
1.67
105041264--105041292
12
2.4
12
100
0
58
31
0
13
55
1.39
105043146--105043173
12
2.3
12
100
0
56
21
0
10
67
1.20
105043725--105043802
31
2.7
29
80
9
81
43
0
8
47
1.34
105043761--105043855
31
3.2
30
74
14
90
40
2
7
50
1.42
105043886--105043982
25
3.9
25
88
8
153
42
1
3
53
1.23
105043886--105043982
49
2.0
49
91
4
160
42
1
3
53
1.23
105044529--105044565
14
2.5
15
95
4
67
62
8
0
29
1.24
105045637--105045683
12
4.4
11
78
21
55
48
0
0
51
1.00
105047328--105047370
3
14.3
3
100
0
86
67
0
0
32
0.91
105049880--105049914
16
2.1
17
89
5
54
57
0
0
42
0.99
105050144--105050177
17
2.0
17
100
0
68
35
5
5
52
1.50
105050453--105050504
22
2.4
21
81
6
59
59
1
0
38
1.08
105051089--105051114
10
2.6
10
100
0
52
53
0
7
38
1.30
105051769--105051805
5
7.6
5
93
6
67
18
0
0
81
0.70
105052657--105053194
269
2.0
269
100
0
1076
30
15
23
29
1.95
105056492--105056523
5
6.6
5
92
7
57
18
0
0
81
0.70
105056492--105056522
9
3.3
9
91
8
53
19
0
0
80
0.71
105057929--105057953
5
5.0
5
100
0
50
80
0
0
20
0.72
105062247--105062305
21
2.8
22
82
7
61
23
1
6
67
1.24
105062260--105062305
22
2.2
22
84
7
60
26
0
4
69
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105062276--105062335
26
2.4
24
83
8
75
28
0
3
68
1.05
105069126--105069449
169
1.9
169
92
1
542
38
18
13
29
1.89
105069383--105069443
23
2.9
20
75
17
61
40
19
8
31
1.81
105069390--105069443
23
2.6
20
78
18
65
37
20
9
33
1.84
105072135--105072286
4
36.5
4
67
10
63
21
9
3
65
1.37
105072359--105072398
16
2.5
15
84
11
53
25
7
5
62
1.42
105072389--105072437
25
2.0
25
100
0
98
22
16
0
61
1.34
105072512--105072568
3
19.3
3
96
3
107
31
0
0
68
0.90
105073309--105073416
26
4.2
26
93
0
189
32
7
24
36
1.83
105074697--105075471
386
2.0
386
99
0
1523
29
17
21
31
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344