genome.fa.s10.2.7.7.80.10.50.1000.279.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  279  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93730960--93731050	23	3.9	23	80	10	78	32	16	26	24	1.96
93730968--93731022	23	2.5	22	88	5	83	32	12	27	27	1.93
93731220--93731266	17	2.6	19	80	16	55	44	14	2	38	1.58
93734400--93734490	42	2.1	44	87	4	132	39	25	13	21	1.90
93738681--93738737	29	2.0	29	96	0	105	33	33	3	29	1.75
93747339--93747514	46	3.8	46	80	12	207	21	21	28	28	1.98
93747336--93747506	93	1.8	93	93	0	297	21	21	28	28	1.99
93754885--93754937	26	2.0	26	88	0	79	15	32	7	45	1.74
93757657--93757737	24	3.6	25	78	18	72	67	6	0	25	1.13
93759732--93759770	17	2.2	18	86	4	53	35	5	0	58	1.20
93761758--93761905	43	3.5	42	77	7	138	25	14	29	30	1.95
93761758--93761873	41	2.7	43	82	4	146	25	14	28	31	1.95
93762946--93762993	20	2.3	22	78	10	64	33	4	12	50	1.59
93767347--93767375	13	2.1	14	93	6	51	37	20	0	41	1.53
93781583--93781673	25	3.7	24	81	7	103	28	21	20	28	1.99
93781596--93781673	25	3.2	25	87	1	113	29	21	23	25	1.99
93781905--93782148	27	9.1	27	82	5	271	25	19	18	37	1.93
93781891--93782151	54	4.9	54	82	6	323	24	19	18	37	1.94
93781880--93782154	107	2.6	106	87	4	385	25	19	17	37	1.93
93781905--93782178	134	2.0	134	81	5	313	25	17	17	39	1.92
93782164--93782342	27	6.6	27	85	2	225	29	8	20	41	1.82
93782134--93782353	54	4.1	55	82	3	232	30	8	21	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93782109--93782353	81	3.0	81	82	3	262	29	9	21	39	1.85
93782334--93782649	27	11.7	27	90	0	445	39	8	22	29	1.83
93782334--93782647	161	1.9	162	90	1	506	40	8	21	29	1.83
93784596--93784647	15	3.5	15	78	0	59	19	11	42	26	1.85
93787711--93787888	29	6.1	29	89	0	248	21	25	14	37	1.92
93789874--93789919	24	1.9	24	86	8	67	28	21	2	47	1.62
93793079--93793273	5	39.0	5	98	0	381	20	0	20	59	1.41
93795646--93795758	36	3.1	36	62	18	90	35	12	20	31	1.90
93795647--93795788	72	2.0	72	97	0	266	35	11	20	31	1.89
93810138--93810183	24	1.9	24	86	8	67	69	2	2	26	1.11
93814210--93814263	28	1.9	28	84	0	72	50	7	16	25	1.71
93822663--93822691	3	9.7	3	100	0	58	0	31	0	68	0.89
93824466--93824519	17	3.5	17	71	23	64	11	12	31	44	1.78
93824744--93824804	25	2.4	25	94	0	113	37	9	11	40	1.75
93832448--93832489	21	2.0	21	100	0	84	33	9	14	42	1.78
93835306--93835341	18	1.9	19	88	5	56	44	2	5	47	1.41
93835331--93835369	20	2.0	19	90	5	60	30	5	0	64	1.15
93841089--93841148	20	3.1	19	78	9	50	31	5	0	63	1.16
93841121--93841266	8	19.5	8	71	18	61	33	2	2	62	1.18
93841099--93841202	3	34.0	3	71	21	58	32	1	0	64	1.11
93841131--93841168	14	2.8	14	88	4	51	34	2	2	60	1.24
93841119--93841215	36	2.7	34	80	14	108	36	1	1	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93846967--93847421	87	5.2	85	64	16	259	35	21	18	25	1.96
93846974--93847479	175	2.9	175	93	0	859	33	21	18	25	1.96
93849362--93849462	24	4.1	24	71	21	77	33	2	0	62	1.17
93849368--93849458	16	4.9	18	73	23	57	32	2	1	63	1.13
93849368--93849469	3	34.0	3	68	24	56	32	1	0	64	1.11
93849766--93849829	26	2.4	26	97	2	119	21	3	10	64	1.40
93852764--93852798	18	1.9	18	100	0	70	22	31	0	45	1.53
93853304--93853355	26	2.0	26	100	0	104	23	11	15	50	1.76
93857140--93857187	21	2.3	21	100	0	96	39	20	14	25	1.91
93862384--93862447	32	2.0	32	81	9	76	54	14	3	28	1.55
93867051--93867082	5	6.6	5	92	7	57	18	0	0	81	0.70
93867051--93867081	9	3.3	9	91	8	53	19	0	0	80	0.71
93874181--93874205	12	2.1	12	100	0	50	32	16	8	44	1.76
93876433--93876461	12	2.5	12	94	5	51	0	17	0	82	0.66
93880583--93880618	18	1.9	19	88	5	56	50	5	0	44	1.25
93880885--93880936	26	2.0	25	81	3	59	30	17	7	44	1.77
93889902--93889935	6	5.7	6	85	0	50	55	2	26	14	1.53
93889901--93889935	18	1.9	18	94	0	61	57	2	25	14	1.51
93890084--93890155	26	2.8	25	82	2	81	40	8	18	33	1.80
93891714--93891766	27	2.0	27	88	0	79	30	11	9	49	1.70
93892155--93892206	21	2.4	21	81	9	61	40	1	3	53	1.30
93901535--93901626	46	2.0	46	100	0	184	26	15	13	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93902847--93902887	19	2.1	20	86	4	57	31	9	2	56	1.45
93903661--93903685	13	1.9	13	100	0	50	44	0	0	56	0.99
93906858--93906890	17	1.9	17	100	0	66	36	0	33	30	1.58
93912536--93912651	57	2.0	57	91	0	187	39	8	12	39	1.73
93915575--93915626	24	2.2	24	85	0	68	38	3	7	50	1.50
93916099--93916206	26	4.2	26	91	0	180	32	8	24	35	1.85
93917806--93917946	27	5.2	27	78	14	148	18	24	22	34	1.96
93917803--93917946	54	2.7	54	86	4	202	18	25	22	34	1.96
93924438--93924474	19	1.9	19	100	0	74	27	0	2	70	1.01
93933557--93933590	18	1.9	18	88	5	52	47	11	2	38	1.55
93937639--93937720	41	2.0	41	95	0	146	52	6	6	35	1.51
93937640--93937747	41	2.6	40	86	7	119	52	7	5	34	1.53
93939204--93939254	25	2.0	25	96	0	93	37	13	11	37	1.82
93944505--93944536	15	2.1	16	88	11	50	50	15	0	34	1.45
93953961--93954017	26	2.2	26	84	6	71	42	26	19	12	1.86
93964010--93964043	13	2.6	13	90	0	59	35	14	11	38	1.83
93966207--93966255	22	2.2	22	82	7	55	16	22	6	55	1.63
93966292--93966354	30	2.1	30	93	0	108	26	1	12	58	1.43
93966693--93966768	26	2.9	25	75	7	80	36	11	21	30	1.89
93971532--93971580	25	1.9	26	95	4	91	32	14	10	42	1.79
93971957--93972010	28	1.9	28	100	0	108	38	11	9	40	1.73
93974302--93974364	18	3.3	18	68	23	56	14	15	3	66	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93974314--93974379	22	3.2	22	68	24	70	10	16	6	66	1.41
93974301--93974379	40	2.0	40	100	0	158	12	16	5	65	1.42
93974305--93974369	20	3.2	20	68	23	64	15	16	3	64	1.41
93980030--93980147	57	2.1	58	88	1	175	44	5	21	27	1.75
93981858--93981897	20	2.0	20	100	0	80	30	20	15	35	1.93
93988451--93988524	20	3.7	20	78	5	69	67	2	4	25	1.21
93988457--93988524	19	3.4	19	73	16	57	67	2	4	25	1.23
93988515--93988549	15	2.3	15	90	0	52	68	2	0	28	1.04
93990052--93990134	38	2.2	39	88	2	123	36	16	18	28	1.93
93990577--93990678	17	5.8	18	72	5	75	44	11	14	29	1.81
93991159--93991212	26	2.0	27	82	10	67	64	5	5	24	1.36
93991444--93991505	26	2.4	26	76	10	65	62	1	12	22	1.38
93993102--93993155	21	2.6	21	78	0	54	24	31	14	29	1.95
93993398--93993432	14	2.6	13	86	8	52	48	8	14	28	1.73
93993276--93993493	88	2.5	88	81	4	235	35	19	16	28	1.93
93993411--93993864	73	6.1	72	86	5	597	31	22	16	29	1.96
93993417--93993857	149	3.0	149	87	5	608	30	23	16	29	1.96
93997668--93997838	93	1.8	93	93	0	297	28	29	20	22	1.98
93997659--93997834	46	3.8	46	78	10	196	29	28	19	22	1.98
93997668--93997853	46	4.0	46	71	14	132	29	29	19	22	1.98
94008169--94008507	178	2.0	164	89	9	522	37	16	7	38	1.76
94014722--94014758	6	6.5	6	84	9	51	13	0	18	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94014722--94014758	11	3.3	11	92	3	56	13	0	18	67	1.23
94020133--94020184	27	1.9	27	88	0	77	42	13	11	32	1.80
94022826--94022859	18	1.9	18	88	5	52	55	2	11	29	1.50
94023585--94023650	10	6.7	9	87	6	69	69	3	4	22	1.20
94023586--94023632	24	2.0	24	82	0	58	68	4	4	23	1.26
94023581--94023638	30	1.9	30	89	6	91	70	3	5	20	1.21
94023617--94023649	16	2.1	16	88	11	50	75	0	6	18	1.00
94023581--94023650	30	2.3	30	85	9	90	70	2	5	21	1.22
94023667--94023691	13	1.9	13	100	0	50	40	16	0	44	1.47
94024287--94024472	96	1.9	97	89	3	286	31	24	16	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344