genome.fa.s10.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  92  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30711991--30712040	24	2.1	24	85	7	66	16	8	28	48	1.74
30718736--30718773	19	2.0	19	100	0	76	42	5	10	42	1.62
30718763--30718817	24	2.4	24	82	14	71	29	9	10	50	1.68
30722287--30722346	30	2.0	30	90	0	93	30	25	8	36	1.85
30729666--30729884	47	4.6	49	91	3	333	32	8	30	28	1.86
30731604--30731678	37	2.0	37	87	5	107	21	9	24	45	1.81
30734923--30734951	15	1.9	15	100	0	58	44	13	0	41	1.44
30739217--30739392	81	2.3	77	81	10	200	32	14	16	36	1.89
30750722--30750778	19	3.0	20	82	5	73	26	7	31	35	1.83
30752905--30753076	93	1.8	93	93	2	301	27	30	21	20	1.98
30752900--30753072	46	3.7	46	81	6	215	28	29	21	20	1.98
30754792--30755272	266	1.8	266	93	0	847	37	6	20	34	1.79
30765452--30765505	27	2.0	27	92	0	90	27	24	11	37	1.89
30770080--30770275	42	4.5	42	74	7	167	28	25	17	29	1.97
30770551--30770580	16	1.9	15	93	6	51	36	13	3	46	1.60
30773051--30773117	33	2.0	33	97	0	125	35	25	2	35	1.71
30773062--30773118	18	3.3	18	66	14	57	35	26	1	36	1.67
30775748--30775784	18	2.1	18	100	0	74	35	21	16	27	1.94
30786327--30786413	39	2.2	39	91	0	138	27	25	22	24	2.00
30789556--30789787	49	4.7	50	81	3	254	26	19	25	29	1.98
30789556--30789786	100	2.3	97	82	3	264	25	19	25	29	1.98
30792806--30792916	40	2.8	40	83	1	98	25	28	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30792829--30793014	41	4.6	41	89	0	232	23	25	25	25	2.00
30792829--30793012	81	2.3	82	81	5	214	22	26	25	25	2.00
30797407--30797482	38	2.0	38	100	0	152	31	23	13	31	1.93
30800788--30800900	38	2.9	38	86	2	136	24	23	25	25	2.00
30800904--30801183	43	6.5	43	92	0	472	11	24	32	31	1.91
30805183--30805354	40	4.3	40	88	2	222	25	27	21	25	1.99
30820507--30820615	43	2.6	43	77	1	121	33	28	15	22	1.94
30820508--30820663	85	1.8	85	80	2	188	33	26	16	23	1.95
30824460--30824588	46	2.8	46	82	10	165	24	19	26	30	1.98
30831932--30832091	46	3.5	46	76	11	164	23	20	26	29	1.99
30833697--30833885	48	3.9	48	87	0	270	24	30	17	26	1.98
30835862--30835914	28	1.9	28	84	3	72	24	24	20	30	1.99
30840151--30840300	41	3.7	41	83	1	212	21	23	27	28	1.99
30843020--30843121	28	3.5	27	70	19	71	23	27	21	27	1.99
30843021--30843157	60	2.3	59	81	11	145	24	24	21	29	1.99
30843162--30843205	19	2.2	20	84	4	54	34	25	18	22	1.96
30843490--30843557	26	2.6	26	80	2	73	30	16	22	30	1.95
30848590--30848815	54	4.2	54	77	5	188	39	19	10	30	1.84
30848590--30848716	27	4.7	27	84	5	177	39	21	10	29	1.86
30848706--30848803	27	3.6	27	77	13	101	39	18	9	32	1.82
30848794--30848991	27	7.3	27	82	2	227	30	22	7	40	1.80
30848590--30848815	110	2.1	110	83	4	280	39	19	10	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30848996--30849404	27	15.3	27	84	2	459	35	20	18	25	1.95
30849831--30849895	22	3.0	22	80	8	78	20	23	23	33	1.97
30850054--30850155	27	3.8	27	84	5	125	18	22	21	37	1.94
30850315--30850397	6	13.5	6	74	14	53	21	18	13	46	1.82
30850292--30850394	31	3.3	31	86	1	134	22	16	11	49	1.78
30850355--30850421	25	2.6	25	88	4	89	25	19	8	46	1.79
30859467--30859533	33	2.0	33	97	0	125	28	5	28	37	1.80
30865436--30865555	59	2.0	59	98	0	231	33	9	27	30	1.88
30868369--30868417	24	1.9	26	88	12	75	36	4	10	48	1.56
30879290--30879343	28	1.9	28	100	0	108	33	18	25	22	1.97
30879287--30879353	28	2.4	28	89	0	98	34	20	25	19	1.96
30879459--30879523	28	2.3	28	89	0	94	30	9	26	33	1.88
30887067--30887184	40	3.0	40	89	0	173	22	16	29	30	1.96
30888700--30888822	48	2.6	48	94	0	210	30	26	17	25	1.97
30896088--30896121	16	2.1	16	100	0	68	47	23	11	17	1.81
30897294--30897436	27	5.3	27	88	3	216	25	14	19	39	1.90
30897294--30897479	81	2.3	81	80	1	194	26	17	17	38	1.92
30897294--30897437	54	2.7	54	95	0	252	25	14	20	39	1.90
30897828--30897870	18	2.4	18	88	0	59	18	13	16	51	1.77
30903924--30904011	6	14.3	6	75	17	83	47	15	18	18	1.83
30903924--30904011	19	4.8	18	75	18	83	47	15	18	18	1.83
30903933--30904011	31	2.5	31	93	0	131	48	15	18	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30903938--30903984	25	1.9	24	95	4	85	44	17	21	17	1.86
30904114--30904272	72	2.3	69	88	5	223	30	18	28	22	1.97
30904489--30904755	81	3.3	81	85	1	365	41	7	19	30	1.79
30904489--30904755	27	9.9	27	85	1	329	41	7	19	30	1.79
30904489--30904790	81	3.7	80	81	5	308	40	7	21	31	1.81
30904759--30905049	27	10.8	26	75	8	151	30	10	20	38	1.86
30904741--30905048	54	5.7	53	74	7	214	30	10	19	38	1.86
30904752--30905021	81	3.4	81	75	5	244	30	10	20	39	1.85
30904903--30905070	54	3.2	51	81	9	185	29	10	22	37	1.88
30904823--30905070	27	9.3	26	76	9	153	30	10	20	38	1.87
30904823--30905068	133	1.8	133	79	3	280	30	10	20	38	1.87
30907020--30907076	6	9.3	6	75	17	55	49	14	17	19	1.80
30907195--30907246	27	1.9	27	84	0	68	32	21	25	21	1.98
30907582--30907840	27	9.6	27	86	1	322	41	8	20	30	1.81
30907583--30907840	81	3.2	81	89	0	372	41	8	19	30	1.80
30907852--30908163	27	11.6	27	74	6	181	29	10	21	39	1.86
30907834--30908163	54	6.2	53	73	9	206	30	10	20	39	1.86
30907845--30908114	81	3.4	81	78	4	305	30	9	21	38	1.85
30907958--30908080	52	2.3	53	87	2	185	28	8	23	39	1.85
30907879--30908161	133	2.1	134	80	6	315	29	10	21	38	1.86
30911760--30911934	40	4.4	40	89	2	239	23	22	28	25	1.99
30921691--30921761	35	2.0	35	100	0	142	32	25	11	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30931948--30931974	11	2.5	11	100	0	54	37	7	11	44	1.68
30932201--30932433	48	5.0	48	72	9	203	30	24	19	25	1.98
30942067--30942361	48	6.1	48	93	0	500	35	6	25	31	1.82
30943682--30943983	41	7.5	41	77	4	173	35	12	28	23	1.92
30943787--30943978	40	4.8	41	79	3	219	36	11	26	25	1.90
30943778--30943978	80	2.5	80	95	0	357	35	11	27	24	1.90
30943689--30943978	81	3.6	80	86	2	357	35	12	28	23	1.91
30947126--30947261	57	2.4	57	85	8	181	38	21	15	24	1.92
30947126--30947303	29	6.3	28	75	8	155	39	21	14	24	1.91
30947126--30947303	83	2.1	84	82	3	205	39	21	14	24	1.91
30952158--30952197	16	2.5	16	83	0	53	47	17	15	20	1.83
30956474--30956498	10	2.5	10	100	0	50	32	24	8	36	1.84
30956708--30956734	5	5.4	5	100	0	54	22	0	0	77	0.76
30959155--30959307	44	3.6	44	74	13	122	28	25	17	28	1.98
30961371--30961443	25	2.9	26	89	4	105	43	6	9	39	1.64
30963421--30963465	23	2.0	23	82	8	56	33	17	2	46	1.61
30963628--30963784	43	3.7	42	76	9	156	31	23	19	25	1.98
30965611--30965651	21	2.0	21	85	9	57	12	31	19	36	1.89
30973679--30973827	51	2.9	52	89	5	225	28	27	14	30	1.95
30973864--30973934	24	2.8	24	87	8	88	21	23	18	36	1.95
30973851--30973934	28	3.1	27	81	13	111	22	26	16	34	1.95
30995930--30996027	23	4.3	23	90	2	162	31	26	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30995937--30996025	45	2.0	45	95	0	160	31	26	22	19	1.97
31010052--31010079	11	2.5	11	100	0	56	10	14	0	75	1.06
31023566--31023610	19	2.3	20	84	3	56	60	0	6	33	1.23
31027501--31027548	25	1.9	25	83	8	62	16	20	22	39	1.92
31031686--31031761	37	2.1	37	89	0	116	26	32	18	22	1.97
31031882--31032427	47	11.6	47	91	1	860	29	30	8	31	1.86
31035859--31035974	40	2.9	40	85	0	133	25	30	21	23	1.99
31035875--31036136	40	6.6	40	80	8	225	24	28	20	26	1.99
31035885--31036136	80	3.2	78	80	9	251	24	28	20	26	1.99
31036426--31036504	29	2.7	29	86	5	106	27	32	15	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344