Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  96  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32164713--32164781
21
3.1
22
79
10
70
46
13
11
28
1.78
32165125--32165171
21
2.2
21
84
0
58
12
8
42
36
1.74
32165757--32165902
65
2.3
65
85
4
190
42
10
24
21
1.85
32173659--32173741
42
2.0
43
85
2
114
15
32
24
27
1.95
32175648--32175697
25
2.0
25
88
0
73
38
20
2
40
1.64
32178474--32178639
27
6.1
27
83
2
190
16
24
23
36
1.94
32178474--32178639
54
3.1
54
92
1
262
16
24
23
36
1.94
32178474--32178639
81
2.0
81
87
4
237
16
24
23
36
1.94
32197377--32197477
30
3.4
29
72
5
87
30
14
25
28
1.95
32199856--32200078
40
5.6
40
85
6
269
24
21
28
25
1.99
32203244--32203568
40
8.2
40
87
4
446
27
26
22
23
1.99
32209217--32209264
22
2.2
23
82
14
57
70
6
12
10
1.32
32214015--32214415
217
1.8
219
86
4
578
21
29
21
27
1.98
32217350--32217394
17
2.6
17
89
6
65
24
37
28
8
1.86
32229773--32229938
54
3.1
54
90
1
244
16
24
23
35
1.95
32229773--32229938
27
6.2
26
84
7
197
16
24
23
35
1.95
32229773--32229938
81
2.0
81
85
4
219
16
24
23
35
1.95
32231129--32231157
14
2.1
14
100
0
58
58
6
0
34
1.25
32235548--32235589
20
2.1
20
100
0
84
28
14
28
28
1.95
32242557--32242603
19
2.5
19
87
12
71
61
0
12
25
1.31
32243123--32243198
22
3.5
22
78
7
82
11
18
22
47
1.81
32250807--32250991
3
61.7
3
73
11
130
33
7
1
57
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32250797--32250861
25
2.7
24
83
4
78
35
6
3
55
1.40
32250797--32250994
23
8.5
23
71
15
95
32
8
1
57
1.37
32251154--32251365
3
71.7
3
73
9
114
29
8
1
60
1.36
32263259--32263671
44
9.4
44
67
6
192
30
23
19
27
1.98
32263223--32263694
88
5.4
88
87
1
642
29
22
20
27
1.98
32263668--32264276
44
13.4
45
71
14
353
31
17
21
29
1.96
32263666--32264242
181
3.2
181
89
2
856
32
16
21
29
1.96
32267039--32267211
3
57.0
3
73
8
82
61
5
6
26
1.44
32266983--32267092
12
9.4
12
72
15
54
63
5
5
25
1.38
32267079--32267113
16
2.1
17
89
5
54
68
5
5
20
1.31
32267168--32267211
22
2.0
22
86
0
61
65
0
4
29
1.12
32268448--32268614
3
55.7
3
69
10
83
32
8
1
56
1.39
32268504--32268614
31
3.6
31
75
9
79
29
8
1
60
1.36
32268557--32268598
17
2.5
17
88
7
59
28
7
2
61
1.35
32268577--32268617
14
2.9
15
89
7
59
31
4
2
60
1.30
32268706--32268756
26
2.0
25
82
17
61
23
13
1
60
1.43
32268777--32269012
3
78.7
3
73
7
158
30
7
1
60
1.33
32274155--32274212
29
2.0
30
82
3
73
60
5
6
27
1.44
32275724--32275749
2
13.0
2
100
0
52
50
0
0
50
1.00
32279140--32279180
20
2.2
19
86
8
57
48
0
12
39
1.41
32280998--32281029
15
2.1
15
94
0
55
15
6
9
68
1.36
32282279--32282316
19
2.0
20
89
5
60
55
31
10
2
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32284141--32284433
50
5.8
50
74
7
236
25
16
25
32
1.96
32284189--32284370
101
1.8
100
83
7
242
26
17
24
30
1.97
32284142--32284427
151
1.9
151
84
5
389
25
16
25
32
1.96
32289590--32289682
48
1.9
48
93
0
159
25
24
24
24
2.00
32289590--32289694
48
2.2
48
89
0
156
25
24
23
25
2.00
32293653--32293732
30
2.7
30
80
0
106
22
25
11
41
1.87
32293761--32293824
29
2.2
30
83
8
78
17
26
14
42
1.87
32293788--32293843
29
1.9
29
81
0
67
23
26
14
35
1.93
32293820--32293882
29
2.2
29
85
0
81
25
28
15
30
1.96
32300164--32300347
40
4.7
40
80
11
177
25
21
27
26
1.99
32300216--32300370
79
2.0
79
81
10
183
25
20
27
25
1.99
32304220--32304624
47
8.6
47
94
1
675
28
29
8
33
1.87
32304270--32304348
25
3.3
25
66
16
76
31
29
5
34
1.79
32310130--32310188
3
19.7
3
92
0
100
33
1
0
64
1.04
32312220--32312305
43
2.0
43
97
0
163
27
24
15
32
1.95
32312315--32312382
34
2.0
34
97
0
127
45
4
20
29
1.70
32315841--32315878
19
2.0
19
100
0
76
47
0
21
31
1.51
32316952--32317011
17
3.4
17
69
13
57
55
1
31
11
1.46
32316947--32317013
21
3.4
21
64
21
54
55
2
31
10
1.49
32316951--32317034
37
2.4
33
81
14
114
50
3
32
14
1.60
32316953--32317027
37
2.0
37
100
0
150
54
2
32
10
1.49
32325625--32325685
26
2.4
25
81
5
77
29
9
16
44
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32326044--32326219
83
2.1
83
97
0
334
27
19
19
32
1.97
32326143--32326855
119
6.0
119
94
0
1183
30
18
17
33
1.94
32326847--32327026
44
4.1
44
73
8
168
29
25
14
30
1.95
32334225--32334323
17
5.6
18
88
9
150
36
13
11
39
1.80
32334225--32334331
35
3.0
35
94
4
178
36
14
10
39
1.80
32336980--32337020
20
2.1
19
86
4
55
21
0
31
46
1.52
32351714--32351826
45
2.5
44
84
8
133
25
27
23
23
2.00
32352158--32352267
43
2.6
43
89
0
175
30
30
24
13
1.94
32352260--32352343
38
2.2
38
86
0
123
33
27
19
20
1.96
32359719--32359896
27
6.6
27
85
3
214
26
14
28
30
1.95
32359720--32359875
82
1.9
81
89
3
242
26
14
28
30
1.95
32359716--32359896
82
2.2
81
84
2
238
27
14
27
30
1.95
32373914--32374054
67
2.0
67
82
10
169
21
27
19
31
1.98
32374163--32374195
14
2.4
14
100
0
66
27
0
30
42
1.56
32375820--32376037
40
5.5
40
90
2
280
22
23
28
25
1.99
32383603--32383766
40
4.1
40
89
3
224
21
23
28
26
1.99
32392576--32392663
45
2.0
45
86
2
124
28
26
15
29
1.96
32398586--32398737
76
2.0
76
94
0
268
38
16
8
36
1.79
32400235--32400302
27
2.5
27
90
0
100
23
26
20
29
1.99
32402808--32403023
79
2.7
78
79
10
233
25
26
21
26
1.99
32402808--32403030
39
5.7
40
84
8
248
25
26
21
26
2.00
32405504--32405635
60
2.2
61
93
2
230
46
15
11
25
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32406581--32406614
17
1.9
17
94
5
59
67
5
0
26
1.13
32407335--32407363
7
4.1
7
100
0
58
86
0
0
13
0.58
32407597--32407681
43
2.0
43
95
0
152
43
7
4
44
1.52
32409213--32409260
22
2.2
21
77
3
51
50
4
2
43
1.33
32410463--32410747
143
2.0
143
94
0
498
28
15
30
25
1.96
32412488--32412598
43
2.6
43
81
5
118
27
17
24
31
1.97
32412491--32412598
42
2.5
42
77
7
119
26
17
24
31
1.97
32412452--32412608
43
3.7
42
71
12
115
25
17
26
31
1.97
32418686--32418773
44
2.0
44
91
4
142
26
13
26
34
1.93
32420788--32420820
13
2.4
14
85
15
50
0
12
15
72
1.12
32421149--32421217
21
3.4
20
73
15
70
56
7
1
34
1.36
32421181--32421239
30
2.0
30
83
6
75
57
8
0
33
1.29
32434165--32434203
19
2.1
19
100
0
78
30
15
15
38
1.88
32440300--32440395
43
2.2
43
96
0
174
19
28
29
22
1.98
32450360--32450577
79
2.7
79
80
6
235
26
27
21
25
1.99
32450374--32450577
40
5.1
40
82
7
236
25
27
21
25
1.99
32454802--32454971
46
3.7
46
75
10
175
22
18
27
31
1.97
32454796--32454966
93
1.8
93
89
0
270
22
18
28
30
1.98
32466254--32466422
48
3.6
48
81
7
170
28
20
27
23
1.99
32468310--32468387
40
2.0
40
87
2
113
26
15
25
32
1.95
32468319--32468420
40
2.5
40
87
0
114
24
16
25
33
1.96
32468407--32468474
28
2.4
28
85
4
84
30
14
26
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32470875--32470971
37
2.6
37
83
0
113
30
18
23
26
1.98
32470937--32471038
48
2.1
48
98
0
195
24
16
27
31
1.96
32470937--32471067
48
2.7
48
91
0
190
24
16
27
31
1.97
32475467--32475570
40
2.6
40
82
0
118
24
17
25
32
1.96
32475557--32475668
28
4.0
28
77
4
100
28
12
27
31
1.93
32491072--32491248
96
1.9
95
83
3
230
27
18
30
23
1.98
32491022--32491396
50
7.7
48
73
14
225
27
18
29
24
1.98
32497193--32497251
30
2.0
30
89
0
91
45
22
10
22
1.81
32504897--32505074
91
2.0
91
93
2
304
46
16
14
23
1.83
32511908--32511966
27
2.2
27
78
6
66
18
10
3
67
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344