genome.fa.s10.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  112  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37949009--37949192	79	2.3	77	79	9	199	26	20	26	26	1.99
37950591--37950617	13	2.1	13	100	0	54	14	33	37	14	1.88
37956406--37956586	40	4.6	39	79	13	176	24	20	28	26	1.99
37956402--37956609	79	2.6	78	77	11	219	24	21	27	26	1.99
37968704--37968831	45	2.9	44	87	6	172	21	21	31	25	1.98
37971390--37971519	45	2.9	45	90	2	192	22	21	30	26	1.99
37979425--37979554	45	2.9	45	87	2	174	23	21	28	26	1.99
37986253--37986292	19	2.1	19	100	0	80	27	20	27	25	1.99
37993125--37993347	39	5.7	40	81	10	232	26	21	27	25	1.99
37993127--37993347	79	2.8	80	79	12	233	26	20	27	25	1.99
37999905--37999964	30	2.0	30	100	0	120	33	20	16	30	1.94
38001145--38001367	39	5.7	40	85	8	266	25	22	26	25	2.00
38001145--38001367	79	2.8	81	84	9	291	25	22	26	25	2.00
38001145--38001400	79	3.3	79	81	10	217	26	21	26	24	2.00
38005194--38005350	43	3.7	41	68	12	111	26	19	23	30	1.98
38011051--38011271	40	5.6	40	87	0	291	26	22	25	26	2.00
38014363--38014437	10	7.1	11	71	7	57	37	13	16	33	1.87
38014363--38014420	21	2.8	21	84	5	73	37	12	18	31	1.88
38022666--38022843	27	6.6	27	81	3	169	30	27	14	27	1.95
38025595--38025644	25	2.0	25	84	4	64	36	22	14	28	1.92
38025681--38025733	11	5.0	11	75	6	56	37	13	20	28	1.90
38025681--38025738	21	2.8	21	84	5	73	37	12	20	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38030082--38030138	29	2.0	29	82	6	71	49	0	22	28	1.50
38032794--38032931	59	2.3	59	96	0	249	31	23	13	31	1.93
38048128--38048292	47	3.5	47	91	3	267	26	29	10	33	1.90
38052200--38052597	40	10.0	40	84	0	492	28	28	18	23	1.98
38054128--38054204	23	3.2	25	63	29	67	28	29	10	31	1.90
38054107--38054320	47	4.5	47	94	2	365	25	29	12	32	1.92
38054107--38054320	96	2.3	94	93	1	365	25	29	12	32	1.92
38058257--38058315	27	2.2	26	84	3	73	22	23	18	35	1.96
38067035--38067164	27	4.8	26	77	9	120	35	19	13	32	1.90
38067119--38067195	26	2.9	25	83	9	82	40	18	10	31	1.84
38067094--38067204	27	4.2	26	77	9	98	40	18	11	29	1.86
38067511--38067569	22	2.7	22	78	0	64	25	25	18	30	1.98
38067923--38067991	32	2.2	32	82	10	79	13	18	27	40	1.88
38068648--38068871	47	4.7	49	78	6	194	27	19	28	24	1.99
38071063--38071135	18	4.1	18	73	7	58	42	9	10	36	1.73
38073142--38073166	13	1.9	13	100	0	50	24	8	20	48	1.76
38093739--38093863	46	2.7	46	92	2	198	20	20	28	30	1.98
38100075--38100279	27	7.6	27	86	3	250	26	14	27	30	1.95
38100075--38100279	109	1.9	109	84	2	277	26	14	27	30	1.95
38120731--38120908	27	6.6	27	84	3	205	29	28	15	26	1.96
38120752--38120907	82	1.9	81	88	3	233	29	28	15	26	1.96
38125971--38126006	18	1.9	19	88	5	56	44	8	8	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38126095--38126201	47	2.2	48	85	5	144	37	23	16	22	1.94
38133601--38133866	47	5.6	48	70	13	169	22	27	20	30	1.98
38133601--38133866	94	2.9	92	75	10	272	22	27	20	30	1.98
38135803--38135980	27	6.6	27	84	3	205	29	28	15	26	1.96
38135824--38135979	82	1.9	81	88	3	233	29	28	15	26	1.96
38136462--38136487	12	2.2	12	100	0	52	42	0	7	50	1.31
38142980--38143057	39	2.0	39	94	0	138	28	25	17	28	1.98
38144093--38144208	44	2.6	43	77	9	117	24	27	19	28	1.99
38144183--38144308	47	2.7	46	83	7	155	22	30	20	26	1.98
38156779--38156954	46	3.8	46	76	12	189	22	19	28	29	1.98
38156775--38156946	93	1.8	93	91	0	281	22	19	29	28	1.98
38159884--38159931	15	3.2	15	87	0	69	12	18	14	54	1.71
38159888--38159942	15	3.7	15	85	2	67	9	18	16	56	1.66
38161737--38161810	37	2.0	37	89	0	112	27	32	18	21	1.97
38161933--38162528	47	12.6	47	93	1	879	29	30	8	31	1.86
38163782--38163857	37	2.1	37	87	0	107	27	32	17	22	1.96
38163978--38164524	47	11.6	47	92	1	835	29	30	8	31	1.86
38167963--38168228	40	6.7	40	77	9	125	24	28	20	26	1.99
38167977--38168228	80	3.2	78	79	10	244	25	28	19	26	1.99
38168518--38168596	29	2.7	29	86	5	106	27	32	15	24	1.95
38168578--38168766	43	4.4	43	98	0	369	26	34	14	23	1.94
38170618--38170693	37	2.1	37	87	0	107	27	32	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38170814--38171293	47	10.2	47	94	1	782	29	30	8	31	1.87
38175618--38175789	93	1.8	93	87	0	254	22	20	29	28	1.98
38181545--38181799	55	4.8	54	78	9	242	36	17	25	21	1.94
38181556--38181752	108	1.8	110	88	4	310	35	17	25	21	1.95
38181996--38182026	16	1.9	16	93	0	53	41	0	22	35	1.54
38185388--38185537	43	3.5	42	76	12	121	30	26	18	24	1.97
38187114--38187363	75	3.3	76	81	3	283	24	22	18	34	1.96
38187131--38187400	150	1.8	150	80	1	326	24	21	20	34	1.96
38191222--38191263	11	3.9	11	78	6	50	35	2	21	40	1.66
38192447--38192706	50	5.2	50	78	4	254	25	18	25	31	1.97
38192443--38192706	101	2.6	101	87	1	377	25	18	25	31	1.98
38207401--38207571	46	3.7	46	74	13	179	22	19	27	30	1.98
38207396--38207565	93	1.8	93	90	0	277	21	20	28	30	1.98
38207796--38207833	19	2.0	20	85	15	53	39	0	21	39	1.53
38211377--38211490	57	2.0	57	98	0	219	35	17	11	35	1.86
38211710--38211755	16	3.0	16	75	6	51	41	8	15	34	1.78
38217383--38217497	43	2.7	43	80	8	126	27	16	26	28	1.97
38217501--38217587	42	2.1	42	80	4	95	28	18	21	31	1.97
38223633--38223805	93	1.9	93	91	0	283	28	31	20	19	1.97
38223634--38223795	46	3.5	46	78	5	191	29	30	20	19	1.97
38223679--38223820	46	3.1	45	74	10	126	30	30	18	20	1.96
38241598--38241628	8	4.0	8	95	4	55	12	0	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38244495--38244559	26	2.5	27	80	7	71	35	21	24	18	1.96
38245637--38245749	27	4.2	27	83	0	136	37	16	18	27	1.93
38246481--38246540	27	2.3	27	88	2	86	21	21	20	36	1.95
38262982--38263047	6	10.8	6	82	9	80	45	15	18	21	1.85
38262982--38263057	37	2.1	37	87	0	107	46	15	18	19	1.85
38263207--38263308	27	3.8	28	83	10	104	37	20	22	19	1.95
38263975--38264331	27	13.3	27	87	3	452	24	19	21	34	1.96
38264344--38264567	81	2.8	81	86	3	310	39	8	23	28	1.83
38264334--38264568	27	8.7	27	81	2	249	39	8	23	29	1.83
38266117--38266148	17	1.9	16	93	6	55	56	15	6	21	1.62
38272512--38272743	49	4.7	49	77	6	216	31	25	16	25	1.97
38272568--38272748	100	1.8	101	86	3	267	30	25	17	25	1.97
38275889--38275927	18	2.1	19	85	9	53	43	17	5	33	1.72
38277580--38277804	40	5.7	40	85	5	287	24	21	27	26	2.00
38277587--38277837	119	2.1	119	83	7	305	27	20	25	26	1.99
38283643--38283793	28	5.4	28	91	1	214	33	28	12	25	1.92
38293499--38293650	27	5.6	27	91	3	214	28	13	28	30	1.94
38293499--38293650	55	2.8	55	91	0	241	28	13	28	30	1.94
38295364--38295514	28	5.4	28	90	1	205	33	27	13	25	1.93
38305269--38305500	49	4.7	49	79	4	232	31	25	16	25	1.97
38305325--38305505	100	1.8	101	87	1	274	31	25	17	25	1.97
38310335--38310559	40	5.7	40	84	5	278	25	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38313067--38313331	40	6.7	40	86	4	313	23	20	28	27	1.99
38321008--38321265	39	6.6	38	85	7	279	24	20	27	27	1.99
38321047--38321265	77	2.8	77	88	5	300	24	20	27	27	1.99
38321047--38321300	77	3.3	77	84	4	244	25	20	27	26	1.99
38336988--38337138	27	5.6	27	91	4	223	27	13	28	30	1.94
38336988--38337138	82	1.9	81	88	4	232	27	13	28	30	1.94
38336988--38337138	55	2.8	55	91	1	232	27	13	28	30	1.94
38345113--38345264	27	5.6	27	91	3	223	26	13	28	30	1.94
38345113--38345264	55	2.8	55	90	0	232	26	13	28	30	1.94
38346986--38347127	28	5.1	28	91	1	205	33	26	12	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344