genome.fa.s10.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  129  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43598547--43598662	60	1.9	60	81	6	137	30	22	21	25	1.99
43598782--43598834	22	2.4	22	87	0	70	28	22	32	16	1.96
43599084--43599140	27	2.1	27	93	0	96	28	19	21	31	1.97
43602180--43602257	25	3.2	23	77	12	61	28	20	20	30	1.98
43602307--43602363	20	3.0	20	87	10	75	33	19	8	38	1.82
43603060--43603124	27	2.4	27	82	5	78	20	23	20	36	1.95
43603178--43603398	27	8.1	27	76	10	164	31	7	19	41	1.79
43603163--43603393	54	4.2	54	79	5	241	30	7	19	41	1.80
43603155--43603392	81	2.9	80	75	9	214	30	7	20	40	1.81
43603240--43603587	27	12.9	27	79	4	184	33	7	22	36	1.83
43603358--43603553	81	2.4	81	84	0	266	35	8	23	32	1.85
43603386--43603542	54	2.9	54	91	0	260	36	8	24	29	1.85
43603414--43603569	81	1.9	81	86	0	213	35	9	23	30	1.87
43610433--43610642	40	5.2	40	86	3	237	27	25	22	24	2.00
43610459--43610642	80	2.3	80	88	3	273	29	26	20	23	1.99
43615827--43616423	47	12.6	47	94	2	1005	28	29	9	32	1.88
43615827--43616423	143	4.2	141	93	2	1005	28	29	9	32	1.88
43615827--43616423	190	3.1	190	95	0	1036	28	29	9	32	1.88
43618577--43618655	36	2.2	36	97	0	149	32	25	7	34	1.84
43618613--43618777	85	1.9	85	98	0	321	27	26	9	36	1.86
43620318--43620609	47	6.2	47	95	0	512	25	28	11	35	1.91
43624524--43624570	24	2.0	24	91	0	76	46	23	19	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43624524--43624574	8	6.4	8	81	0	57	49	21	19	9	1.77
43624785--43624908	29	4.4	28	81	2	131	27	13	29	29	1.94
43628233--43628257	13	1.9	13	100	0	50	16	32	16	36	1.90
43630801--43630916	27	4.3	26	78	6	90	23	18	17	40	1.91
43630911--43631250	27	12.7	27	89	1	461	37	15	14	32	1.88
43641496--43641541	20	2.3	20	84	0	56	39	17	21	21	1.93
43649910--43649936	13	2.1	13	100	0	54	59	0	7	33	1.25
43650070--43650098	12	2.5	12	94	5	51	24	27	0	48	1.51
43653834--43653949	27	4.3	27	80	4	117	24	18	16	40	1.91
43653938--43654311	27	13.9	28	84	5	452	37	15	14	32	1.87
43653944--43654311	81	4.6	81	88	0	513	37	15	14	32	1.87
43663882--43663927	20	2.3	20	84	0	56	39	17	21	21	1.93
43672270--43672296	13	2.1	13	100	0	54	59	0	7	33	1.25
43672430--43672458	12	2.5	12	94	5	51	24	27	0	48	1.51
43676139--43676252	27	4.3	27	77	10	101	23	18	16	41	1.90
43676247--43676612	27	13.7	27	86	1	477	37	15	13	32	1.87
43688963--43689121	44	3.6	44	73	8	162	21	19	25	33	1.97
43688960--43689147	87	2.2	87	92	0	304	21	19	25	34	1.97
43688960--43689169	87	2.4	87	88	3	289	21	18	25	33	1.96
43699562--43699604	20	2.1	20	86	4	59	62	0	20	16	1.32
43700359--43700383	13	1.9	13	100	0	50	32	20	16	32	1.94
43700930--43701107	27	6.6	27	82	3	196	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43700931--43701086	82	1.9	81	86	3	224	26	14	28	30	1.95
43700927--43701107	82	2.2	81	82	2	220	27	14	27	30	1.95
43701012--43701118	27	3.9	27	85	1	70	26	14	28	30	1.95
43707604--43707646	20	2.1	20	86	4	59	62	0	20	16	1.32
43708780--43708957	27	6.6	27	83	3	196	27	15	27	29	1.96
43708781--43708936	82	1.9	81	86	3	224	27	15	27	29	1.96
43708777--43708957	82	2.2	81	82	2	220	27	15	27	29	1.96
43708862--43708968	27	3.9	27	85	1	70	26	14	28	30	1.95
43711929--43712104	46	3.8	46	78	12	207	20	20	29	29	1.98
43711926--43712097	93	1.8	93	94	0	308	20	20	29	28	1.98
43717801--43717825	11	2.3	11	100	0	50	20	8	36	36	1.82
43724238--43724310	27	2.7	27	72	4	67	36	23	8	31	1.84
43724323--43724537	27	8.0	27	89	1	308	30	20	8	40	1.82
43724534--43724637	27	3.9	26	78	6	82	42	21	6	29	1.78
43724528--43724667	54	2.6	53	77	6	147	41	22	7	29	1.80
43724566--43724666	27	3.7	27	85	5	107	43	22	6	26	1.78
43724622--43724959	27	12.6	27	84	4	396	35	19	20	25	1.96
43725379--43725457	31	2.5	31	89	4	115	18	13	13	53	1.73
43727445--43727539	27	3.5	26	77	8	84	42	21	7	29	1.80
43727544--43727791	27	9.3	27	87	0	311	30	20	8	40	1.82
43727785--43727885	27	3.7	27	82	2	96	41	19	7	30	1.80
43727814--43728124	27	11.6	27	87	2	376	35	20	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43728544--43728622	6	12.8	6	70	19	56	20	15	13	50	1.77
43728544--43728622	31	2.5	31	93	0	131	20	15	13	50	1.77
43743614--43743759	39	3.7	39	95	0	256	19	22	28	28	1.98
43745437--43745487	21	2.4	21	90	0	84	43	15	15	25	1.86
43747690--43747855	40	4.2	40	91	2	255	27	25	22	23	2.00
43752964--43753191	114	2.0	113	90	0	357	33	23	13	29	1.93
43752962--43753196	56	4.2	56	90	2	355	33	23	14	29	1.94
43757156--43757212	26	2.2	26	83	3	69	28	19	17	35	1.94
43757458--43757490	17	1.9	17	88	11	50	27	0	0	72	0.85
43758446--43758503	15	3.9	15	72	2	55	67	0	27	5	1.12
43759450--43759481	15	2.2	15	94	5	57	53	0	0	46	1.00
43759564--43759607	19	2.4	18	85	7	54	40	9	0	50	1.34
43764035--43764419	40	9.6	40	92	1	619	28	20	28	23	1.99
43771689--43772073	40	9.6	40	92	1	619	28	20	28	23	1.99
43774454--43774631	56	3.2	56	93	0	293	33	22	14	30	1.93
43782077--43782115	4	9.8	4	94	0	69	74	0	25	0	0.82
43782403--43782432	11	2.7	11	94	0	51	66	0	0	33	0.92
43785150--43785191	22	1.9	22	85	9	59	42	16	0	40	1.48
43792134--43792212	37	2.1	37	88	4	115	25	30	18	25	1.98
43792331--43792774	47	9.4	47	94	1	744	29	29	8	32	1.87
43822187--43822361	46	3.8	46	72	13	178	30	27	20	22	1.98
43822195--43822366	93	1.8	93	88	0	263	29	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43852298--43852472	46	3.8	46	72	13	178	30	27	20	22	1.98
43852306--43852477	93	1.8	93	88	0	263	29	28	20	22	1.98
43854573--43854645	35	2.1	35	100	0	146	34	5	20	39	1.76
43861932--43862001	33	2.1	33	97	0	131	50	5	15	28	1.67
43875827--43875856	11	2.7	11	100	0	60	26	10	10	53	1.66
43878355--43878424	26	2.8	25	81	10	81	40	21	21	17	1.92
43879687--43879776	24	3.8	24	86	2	119	22	22	22	33	1.97
43879688--43879819	23	5.6	23	72	14	90	25	20	20	33	1.97
43881490--43881639	65	2.3	65	80	4	169	36	20	19	24	1.95
43886808--43886906	47	2.1	46	85	9	130	32	9	13	45	1.74
43887629--43887942	170	1.8	170	90	1	504	28	23	17	30	1.97
43888638--43888692	22	2.5	22	72	18	60	58	1	14	25	1.47
43890165--43890311	65	2.3	65	85	0	177	36	22	19	21	1.95
43891645--43891688	22	2.0	22	86	0	61	31	4	29	34	1.78
43892644--43892722	32	2.5	32	85	0	95	32	12	27	26	1.93
43892800--43892868	29	2.4	29	92	0	111	27	15	23	33	1.95
43899486--43899605	60	2.0	60	91	0	195	25	14	20	40	1.89
43901905--43901977	34	2.1	34	97	0	137	34	9	13	42	1.77
43902366--43902451	41	2.1	41	97	0	163	37	32	10	19	1.86
43919808--43919936	27	4.8	27	81	9	147	34	20	24	20	1.96
43919810--43919940	54	2.4	55	91	3	212	35	21	24	19	1.96
43921492--43921599	26	4.2	26	89	0	153	36	25	7	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43926155--43926596	47	9.4	47	92	0	695	32	9	29	28	1.88
43926715--43926793	37	2.1	37	88	4	115	24	18	31	25	1.98
43928531--43928620	41	2.2	41	86	4	119	35	15	26	22	1.94
43932283--43932316	15	2.2	16	90	10	54	79	5	2	11	1.02
43937990--43938152	45	3.6	45	89	0	256	25	26	23	23	2.00
43945612--43945714	43	2.4	44	90	9	176	29	27	22	21	1.99
43956903--43956993	27	3.4	26	86	4	119	27	24	7	40	1.82
43956983--43957123	53	2.6	57	73	17	138	39	22	9	27	1.86
43957025--43957121	27	3.7	26	78	9	115	43	23	6	26	1.77
43957125--43957209	27	3.1	27	79	14	84	40	16	8	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344