genome.fa.s10.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  109  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36730250--36730416	46	3.6	47	76	10	164	30	26	19	22	1.98
36730249--36730434	46	4.0	46	69	20	127	29	27	19	23	1.98
36730846--36730905	30	2.0	30	86	0	84	33	25	5	36	1.78
36737575--36737612	19	2.0	20	85	15	53	39	23	0	36	1.55
36738429--36738485	28	2.0	29	86	3	80	33	26	5	35	1.79
36741838--36742126	70	4.1	70	83	0	328	26	18	20	34	1.96
36741922--36742105	36	5.2	36	75	5	115	27	16	19	36	1.93
36741937--36742122	34	5.4	34	72	12	126	26	17	20	34	1.95
36741822--36742122	140	2.2	140	83	1	370	26	17	20	35	1.94
36743928--36744001	32	2.3	33	84	9	91	40	17	21	20	1.91
36759749--36759898	43	3.5	42	76	9	126	29	25	18	26	1.98
36759749--36759898	42	3.5	44	72	9	121	29	25	18	26	1.98
36768041--36768400	47	7.6	47	93	2	585	28	30	8	33	1.86
36768091--36768169	25	3.3	25	66	16	76	31	29	5	34	1.79
36768041--36768400	96	3.8	96	94	2	620	28	30	8	33	1.86
36768041--36768400	143	2.5	141	93	2	621	28	30	8	33	1.86
36770572--36770597	12	2.2	12	100	0	52	50	7	0	42	1.31
36771044--36771141	27	3.5	28	90	2	135	26	13	28	31	1.94
36771072--36771154	27	3.0	27	87	5	96	30	12	25	32	1.92
36774508--36774676	43	4.0	42	75	9	135	33	24	14	27	1.95
36784999--36785024	13	2.0	13	100	0	52	30	15	7	46	1.74
36786576--36786764	40	4.7	40	82	5	193	34	25	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36788936--36789225	27	10.7	27	87	1	323	38	22	9	30	1.86
36789152--36789277	27	4.7	27	76	9	87	37	23	8	30	1.85
36789268--36789506	27	8.9	27	80	5	252	36	17	20	25	1.94
36789268--36789506	81	3.0	79	82	7	293	36	17	20	25	1.94
36790029--36790095	6	10.8	6	73	17	57	17	19	14	47	1.82
36790029--36790104	31	2.5	31	86	4	109	18	17	15	48	1.81
36793960--36794104	40	3.6	40	84	4	184	25	24	26	24	2.00
36801952--36802095	40	3.6	40	85	5	184	25	24	26	23	2.00
36813600--36813866	40	6.7	40	96	0	489	29	20	28	22	1.98
36823712--36823885	49	3.5	49	83	1	213	32	27	14	25	1.95
36826833--36826862	13	2.3	13	94	0	51	10	26	30	33	1.89
36829608--36829690	27	3.1	27	89	5	116	40	20	7	31	1.79
36829615--36829707	27	3.4	27	86	4	107	39	23	7	29	1.82
36830117--36830209	27	3.5	26	72	8	71	22	18	20	38	1.93
36830198--36830287	32	2.8	32	78	6	101	27	20	20	32	1.97
36830198--36830299	32	3.2	30	76	13	89	27	20	20	31	1.98
36831106--36831294	94	2.0	94	92	0	315	32	26	13	27	1.94
36834107--36834152	24	1.9	24	95	0	83	34	13	6	45	1.69
36836392--36836434	23	1.9	22	86	13	61	53	23	2	20	1.57
36837554--36837578	12	2.1	12	100	0	50	52	16	8	24	1.70
36840074--36840154	42	1.9	42	85	7	110	28	25	17	28	1.97
36846102--36846159	22	2.4	25	81	13	61	24	25	15	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36848528--36848683	28	5.6	28	91	1	224	25	12	28	33	1.92
36855810--36855960	28	5.4	28	92	1	223	25	11	28	33	1.92
36859155--36859260	52	2.0	52	100	0	212	39	8	22	29	1.84
36861150--36861261	24	4.6	24	72	4	82	29	28	15	26	1.96
36866478--36866749	45	6.1	45	87	4	376	28	28	19	23	1.98
36868824--36868999	27	6.5	27	83	3	201	27	14	27	30	1.95
36868825--36868980	82	1.9	81	88	3	233	26	15	28	29	1.96
36868821--36868999	82	2.2	81	82	3	225	27	15	27	30	1.96
36887448--36887707	40	6.6	40	91	1	375	21	27	24	26	1.99
36903981--36904158	52	3.5	51	87	6	247	28	15	28	28	1.96
36910973--36911380	47	8.6	47	91	4	629	32	8	28	29	1.87
36910973--36911380	96	4.3	96	91	3	641	32	8	28	29	1.87
36917756--36917830	26	2.9	26	85	0	105	37	24	21	17	1.94
36917811--36917872	25	2.4	27	83	5	74	35	22	24	17	1.95
36917983--36918034	27	1.9	27	84	7	70	30	19	21	28	1.97
36929715--36929896	49	3.7	49	81	2	220	28	26	19	25	1.99
36929708--36929894	100	1.9	100	93	0	320	28	25	20	25	1.99
36930142--36930195	27	2.0	27	85	0	72	38	14	7	38	1.75
36932644--36932708	29	2.3	29	86	2	87	44	3	24	27	1.68
36935988--36936150	42	3.7	43	80	7	177	33	27	17	21	1.96
36941662--36941701	18	2.2	18	86	0	53	57	15	5	22	1.57
36941662--36941688	12	2.2	12	100	0	54	59	14	0	25	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36946039--36946090	21	2.5	20	82	11	61	32	1	21	44	1.63
36952306--36952413	43	2.5	41	84	10	128	29	21	15	33	1.94
36957292--36957339	20	2.4	20	100	0	96	47	12	31	8	1.71
36967143--36967178	18	2.0	18	100	0	72	38	16	5	38	1.72
36986990--36987048	26	2.3	27	82	8	77	25	13	20	40	1.89
36987727--36987772	24	1.9	24	100	0	92	19	41	26	13	1.88
36994316--36994361	22	2.1	22	100	0	92	28	13	8	50	1.70
37000287--37000640	40	8.9	40	95	0	627	25	20	29	24	1.99
37007643--37008036	40	9.9	40	96	0	707	25	20	29	24	1.99
37010046--37010372	47	6.8	47	76	10	268	22	31	18	26	1.97
37010046--37010411	47	7.7	49	75	12	255	23	30	18	27	1.98
37010046--37010415	94	3.9	95	77	12	339	23	30	18	27	1.98
37010096--37010412	142	2.2	146	81	8	366	23	30	18	27	1.98
37011083--37011107	13	1.9	13	100	0	50	64	16	4	16	1.44
37016584--37016627	22	2.0	22	91	4	72	27	27	36	9	1.87
37016588--37016645	22	2.6	22	86	0	71	31	29	27	12	1.92
37017740--37018067	47	6.9	49	71	14	186	23	30	17	27	1.97
37018732--37018756	13	1.9	13	100	0	50	56	16	12	16	1.68
37020024--37020081	20	2.9	20	84	0	80	43	18	27	10	1.83
37020396--37020433	14	2.7	14	91	0	58	52	39	0	7	1.31
37021059--37021086	5	5.6	5	100	0	56	82	0	0	17	0.68
37025782--37025806	13	1.9	13	100	0	50	24	4	0	72	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37029631--37029672	19	2.2	20	83	12	52	50	19	0	30	1.48
37030757--37030804	16	2.8	17	84	6	53	68	8	6	16	1.35
37035671--37035877	40	5.2	40	91	4	305	24	22	27	25	2.00
37042628--37042652	13	1.9	13	100	0	50	24	24	24	28	2.00
37044924--37044959	18	1.9	19	88	5	56	33	19	2	44	1.65
37056288--37056320	6	5.5	6	86	13	50	15	18	15	51	1.77
37060655--37060700	11	4.5	11	78	13	53	34	13	19	32	1.90
37060649--37060700	9	5.2	10	77	13	54	34	11	19	34	1.88
37063396--37063568	46	3.8	45	75	13	181	22	20	27	30	1.98
37063393--37063563	93	1.8	93	92	0	288	22	20	28	29	1.98
37067826--37068055	100	2.3	98	83	3	291	25	18	26	29	1.98
37067823--37068055	49	4.7	50	81	4	283	25	18	27	29	1.98
37070812--37070850	15	2.5	15	91	4	60	15	12	15	56	1.68
37073108--37073340	49	4.7	50	81	3	265	26	18	27	27	1.98
37075198--37075232	18	1.9	18	88	0	52	42	8	17	31	1.79
37077722--37078174	131	3.5	133	76	5	406	34	18	18	28	1.95
37087203--37087305	39	2.6	38	77	11	118	25	23	25	26	2.00
37087203--37087313	40	2.8	38	77	10	125	23	22	25	28	1.99
37092090--37092234	40	3.6	40	85	4	193	25	24	26	23	2.00
37100098--37100241	40	3.6	40	85	5	184	25	24	26	23	2.00
37103843--37103997	46	3.4	46	79	10	190	21	20	29	29	1.98
37103888--37103959	20	3.3	20	65	20	54	22	20	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37111133--37111260	45	2.8	46	90	4	197	19	21	28	29	1.98
37123923--37123982	30	2.0	29	83	3	75	36	6	25	31	1.82
37129834--37129958	29	4.4	28	81	5	144	32	26	14	26	1.94
37130153--37130202	16	3.1	15	80	5	55	8	20	28	44	1.79
37130161--37130207	8	5.9	8	87	0	58	10	14	27	46	1.78
37130160--37130207	24	2.0	24	87	0	69	10	16	27	45	1.80
37131424--37131455	16	2.0	16	93	0	55	9	6	34	50	1.60
37143028--37143058	16	1.9	16	93	0	53	58	3	9	29	1.46
37152809--37152850	21	2.0	21	100	0	84	42	14	4	38	1.66
37156331--37156387	30	1.9	30	85	7	80	40	7	24	28	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344